TCONS_00022755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022755
Unique NameTCONS_00022755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022755 ID=TCONS_00022755|Name=TCONS_00022755|organism=Clytia hemisphaerica|type=transcript|length=1618bp
CATCTTAGGCGCATTACGTAATCATCTAACTGTATTAGAAGAGGCCGTAG
GTGTATTTTATGAGACTAATAATTCACTTTCACCTTTTTCAGCATCTAAC
TTAcgtttaaaaaataacaaaattaaatttaacgAACAACCATGCAGAGA
ATGGAGAAGATAAACGAGCTAGCTACAGTAGCAGGTGTGCAACAATCTAA
AGGACCAATCCAATGTTTACATTACTCTGATACGTGGATGAAAGAAGAAT
ACAAACTGTTGGAGCTTACAGATGAATTGGCAAATCTGGTGAAAGAAGGT
AACATTCTCACCATTCGTGGCGAAGGTGAAGATGAAGCTGTCTTATGcac
acaaaacaaaacatttgatCTCAAAGCTGCCGACACCTCCAACGCCTTGC
TTCTGTTACCTCACATTCAAACACCCAAAACGCACAATTTTCAATGTGAT
AAACATTTGGTGGACCTTCCAGTCTATAGTAGTTTTAATTCATATTTCGA
GGTCAAACTATCTCGTGCACGTCTTGGGAGATTGAAGTTTATCCTCAAAG
AGCATTGTTTTTCTGGCGAGTCTCTAGAGGGGTCACAAAAACTGACTACA
GATGATTTGTTAGACGCTGTGCAAGCCAGTAAGGAAGAACTTATGGAAGG
ATTGAAGCAATTAGGTGCTATTTACGTCGATAATCAATGGTTACTATTGG
AGATCAATTACCAGGAGAAAGCCTTCAGTCAGATTTTAGCTCTTATGGAA
GAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTTCCAGAGACTGTCCAGAT
GTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGCATTGTTTGAAAACTT
ATGGAGTGGAAACAGATACAGAGAAACCCTTCAGTCAGATTTTAGCTCTT
ATGGAAGAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTACCAGAGACTGT
CGAGATGTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGCATTGTTTGA
AAACTTATGGAGTGGAAACAGATACAGAGAAACGTGTTTTTAGTTTAAGC
GAGGATCAAGTATGTACTTATTATGCAGAATACATTCTAAGACCTGCTCT
TgggaaattcaattttcacgaGTTTATGACTGCGTGGAAAGAAAGTGTTC
CTGACGGCATGACTACCTCCCTTGGGCATCTCAAAGGTGTGGCTCTAGTT
GATATGAAGAACCACCCACCGgttatttggcatttttccGAGCATGATCT
ACCGGACAGTCCAGCTGAGAGGTTCACCATGCTCTTCAAAACACGCCCGA
GATGGAAGGAGGAGGATATAACGCCTTATTTGGTCAATGTTTTGGGGCCT
AACCAAAAATTGAGCTCCCTGTTTCTAAAGTATGCCCGCAGCTCAAAAGA
CGAAAATGGAGATAAAGTATACAGCTGCAGatgatttattttgtgagatt
ttcttgttatttttttattttgttatttatttcttaAGACTTTTTAAAAT
ACAACAGACATATATAATCATTATCATATTTAAAGTGCAAAGAAGATGGT
CTACCATGGCATAGTTAGGAGTCTTTCGTTATCTTTATTTAACAACCCTT
TCCCTTGGACCCTTTGCC
Run BLAST on NCBI

protein sequence of TCONS_00022755-protein

>TCONS_00022755-protein ID=TCONS_00022755-protein|Name=TCONS_00022755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MQRMEKINELATVAGVQQSKGPIQCLHYSDTWMKEEYKLLELTDELANLV
KEGNILTIRGEGEDEAVLCTQNKTFDLKAADTSNALLLLPHIQTPKTHNF
QCDKHLVDLPVYSSFNSYFEVKLSRARLGRLKFILKEHCFSGESLEGSQK
LTTDDLLDAVQASKEELMEGLKQLGAIYVDNQWLLLEINYQEKAFSQILA
LMEEKCWSWKEIPFPETVQMLNELYPEFVLEHCLKTYGVETDTEKPFSQI
LALMEEKCWSWKEIPLPETVEMLNELYPEFVLEHCLKTYGVETDTEKRVF
SLSEDQVCTYYAEYILRPALGKFNFHEFMTAWKESVPDGMTTSLGHLKGV
ALVDMKNHPPVIWHFSEHDLPDSPAERFTMLFKTRPRWKEEDITPYLVNV
LGPNQKLSSLFLKYARSSKDENGDKVYSCR
Run BLAST on NCBI

transcript from alignment at sc0000432:20334..22117+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022755 ID=TCONS_00022755|Name=TCONS_00022755|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at sc0000432:20334..22117+ (Clytia hemisphaerica)
CATCTTAGGCGCATTACGTAATCATCTAACTGTATTAGAAGAGGCCGTAG
GTGTATTTTATGAGACTAATAATTCACTTTCACCTTTTTCAGCATCTAAC
TTAcgtttaaaaaataacaaaattaaatttaacgAACAACCATGCAGAGA
ATGGAGAAGATAAACGAGCTAGCTACAGTAGCAGGTGTGCAACAATCTAA
AGGACCAATCCAATGTTTACATTACTCTGATACGTGGATGAAAGAAGAAT
ACAAACTGTTGGAGCTTACAGATGAATTGGCAAATCTGGTGAAAGAAGGT
AACATTCTCACCATTCGTGGCGAAGGTGAAGATGAAGCTGTCTTATGcac
acaaaacaaaacatttgatCTCAAAGCTGCCGACACCTCCAACGCCTTGC
TTCTGTTACCTCACATTCAAACACCCAAAACGCACAATTTTCAATGTGAT
AAACATTTGGTGGACCTTCCAGTCTATAGTAGTTTTAATTCATATTTCGA
GGTCAAACTATCTCGTGCACGTCTTGGGAGATTGAAGTTTATCCTCAAAG
AGCATTGTTTTTCTGGCGAGTCTCTAGAGGGGTCACAAAAACTGACTACA
GATGATTTGTTAGACGCTGTGCAAGCCAGTAAGGAAGAACTTATGGAAGG
ATTGAAGCAATTAGGTGCTATTTACGTCGATAATCAATGGTTACTATTGG
AGATCAATTACCAGGAGAAAGCCTTCAGTCAGATTTTAGCTCTTATGGAA
GAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTTCCAGAGACTGTCCAGAT
GTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGCATTGTTTGAAAACTT
ATGGAGTGGAAACAGATACAGAGAAACGTTTTTTTAGTTTAAGCGANAGA
GGGGTCACAAAAACTGACTACAGATGATTTGTTAGACGCTGTGCAAGCCA
GTAAGGAAGAACTTATGGAAGGATTGAAGCAATTAGGTGCTATTTACGTC
GATAATCAATGGTTACTATTGGAGATCAATTACCAGGAGAAAGCCTTCAG
TCAGATTTTAGCTCTTATGGAAGAGAAGTGTTGGAGCTGGAAAGAAATTC
CTTTACCAGAGACTGTCGAGATGTTAAATGAGCTCTACCCTGAATTCGTT
CTTGAGCATTGTTTGAAAACTTATGGAGTGGAAACAGATACAGAGAAACG
TGTTTTTAGTTTAAGCGAGGATCAAGTATGTACTTATTATGCAGAATACA
TTCTAAGACCTGCTCTTgggaaattcaattttcacgaGTTTATGACTGCG
TGGAAAGAAAGTGTTCCTGACGGCATGACTACCTCCCTTGGGCATCTCAA
AGGTGTGGCTCTAGTTGATATGAAGAACCACCCACCGgttatttggcatt
tttccGAGCATGATCTACCGGACAGTCCAGCTGAGAGGTTCACCATGCTC
TTCAAAACACGCCCGAGATGGAAGGAGGAGGATATAACGCCTTATTTGGT
CAATGTTTTGGGGCCTAACCAAAAATTGAGCTCCCTGTTTCTAAAGTATG
CCCGCAGCTCAAAAGACGAAAATGGAGATAAAGTATACAGCTGCAGatga
tttattttgtgagattttcttgttatttttttattttgttatttatttct
taAGACTTTTTAAAATACAACAGACATATATAATCATTATCATATTTAAA
GTGCAAAGAAGATGGTCTACCATGGCATAGTTAGGAGTCTTTCGTTATCT
TTATTTAACAACCCTTTCCCTTGGACCCTTTGCC

Coding sequence (CDS) from alignment at sc0000432:20334..22117+

>TCONS_00022755 ID=TCONS_00022755|Name=TCONS_00022755|organism=Clytia hemisphaerica|type=CDS|length=2586bp|location=Sequence derived from alignment at sc0000432:20334..22117+ (Clytia hemisphaerica)
ATGCAGAGAATGGAGAAGATAAACGAGCTAGCTACAGTAGCAGGTGTGCA
ACAATCTAAAGGACCAATCCAATGTTTACATTACTCTGATACGTGGATGA
AAGAAGAATACAAACTGTTGGAGCTTACAGATGAATTGGCAAATCTGGTG
AAAGAAGGTAACATTCTCACCATTCGTGGCGAAGGTGAAGATGAAGCTGT
CTTATGcacacaaaacaaaacatttgatCTCAAAGCTGCCGACACCTCCA
ACGCCTTGCTTCTGTTACCTCACATTCAAACACCCAAAACGCACAATTTT
CAATGTGATAAACATTTGGTGGACCTTCCAGTCTATAGTAGTTTTAATTC
ATATTTCGAGGTCAAACTATCTCGTGCACGTCTTGGGAGATTGAAGTTTA
TCCTCAAAGAGCATTGTTTTTCTGGCGAGTCTCTAGAGGGGTCACAAAAA
CTGACTACAGATGATTTGTTAGACGCTGTGCAAGCCAGTAAGGAAGAACT
TATGGAAGGATTGAAGCAATTAGGTGCTATTTACGTCGATAATCAATGGT
TACTATTGGAGATCAATTACCAGGAGAAAGCCTTCAGTCAGATTTTAGCT
CTTATGGAAGAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTTCCAGAGAC
TGTCCAGATGTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGCATTGTT
TGAAAACTTATGGAGTGGAAACAGATACAGAGAAACCCTTCAGTCAGATT
TTAGCTCTTATGGAAGAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTACC
AGAGACTGTCGAGATGTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGC
ATTGTTTGAAAACTTATGGAGTGGAAACAGATACAGAGAAACGTGTTTTT
AGTTTAAGCGAGGATCAAGTATGTACTTATTATGCAGAATACATTCTAAG
ACCTGCTCTTgggaaattcaattttcacgaGTTTATGACTGCGTGGAAAG
AAAGTGTTCCTGACGGCATGACTACCTCCCTTGGGCATCTCAAAGGTGTG
GCTCTAGTTGATATGAAGAACCACCCACCGgttatttggcatttttccGA
GCATGATCTACCGGACAGTCCAGCTGAGAGGTTCACCATGCTCTTCAAAA
CACGCCCGAGATGGAAGGAGGAGGATATAACGCCTTATTTGGTCAATGTT
TTGGGGCCTAACCAAAAATTGAGCTCCCTGTTTCTAAAGTATGCCCGCAG
CTCAAAAGACGAAAATGGAGATAAAGTATACAGCTGCAGatgaATGCAGA
GAATGGAGAAGATAAACGAGCTAGCTACAGTAGCAGGTGTGCAACAATCT
AAAGGACCAATCCAATGTTTACATTACTCTGATACGTGGATGAAAGAAGA
ATACAAACTGTTGGAGCTTACAGATGAATTGGCAAATCTGGTGAAAGAAG
GTAACATTCTCACCATTCGTGGCGAAGGTGAAGATGAAGCTGTCTTATGc
acacaaaacaaaacatttgatCTCAAAGCTGCCGACACCTCCAACGCCTT
GCTTCTGTTACCTCACATTCAAACACCCAAAACGCACAATTTTCAATGTG
ATAAACATTTGGTGGACCTTCCAGTCTATAGTAGTTTTAATTCATATTTC
GAGGTCAAACTATCTCGTGCACGTCTTGGGAGATTGAAGTTTATCCTCAA
AGAGCATTGTTTTTCTGGCGAGTCTCTAGAGGGGTCACAAAAACTGACTA
CAGATGATTTGTTAGACGCTGTGCAAGCCAGTAAGGAAGAACTTATGGAA
GGATTGAAGCAATTAGGTGCTATTTACGTCGATAATCAATGGTTACTATT
GGAGATCAATTACCAGGAGAAAGCCTTCAGTCAGATTTTAGCTCTTATGG
AAGAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTTCCAGAGACTGTCCAG
ATGTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGCATTGTTTGAAAAC
TTATGGAGTGGAAACAGATACAGAGAAACCCTTCAGTCAGATTTTAGCTC
TTATGGAAGAGAAGTGTTGGAGCTGGAAAGAAATTCCTTTACCAGAGACT
GTCGAGATGTTAAATGAGCTCTACCCTGAATTCGTTCTTGAGCATTGTTT
GAAAACTTATGGAGTGGAAACAGATACAGAGAAACGTGTTTTTAGTTTAA
GCGAGGATCAAGTATGTACTTATTATGCAGAATACATTCTAAGACCTGCT
CTTgggaaattcaattttcacgaGTTTATGACTGCGTGGAAAGAAAGTGT
TCCTGACGGCATGACTACCTCCCTTGGGCATCTCAAAGGTGTGGCTCTAG
TTGATATGAAGAACCACCCACCGgttatttggcatttttccGAGCATGAT
CTACCGGACAGTCCAGCTGAGAGGTTCACCATGCTCTTCAAAACACGCCC
GAGATGGAAGGAGGAGGATATAACGCCTTATTTGGTCAATGTTTTGGGGC
CTAACCAAAAATTGAGCTCCCTGTTTCTAAAGTATGCCCGCAGCTCAAAA
GACGAAAATGGAGATAAAGTATACAGCTGCAGatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012779XLOC_012779Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022755-proteinTCONS_00022755-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022755-exon-sc0000432-1491911889:20334..21210TCONS_00022755-exon-sc0000432-1491911889:20334..21210Clytia hemisphaericaexon
TCONS_00022755-exon-sc0000432-1510915933:20334..21210TCONS_00022755-exon-sc0000432-1510915933:20334..21210Clytia hemisphaericaexon
TCONS_00022755-exon-sc0000432-1575043694:20334..21210TCONS_00022755-exon-sc0000432-1575043694:20334..21210Clytia hemisphaericaexon
TCONS_00022755-exon-sc0000432-1491911889:21377..22117TCONS_00022755-exon-sc0000432-1491911889:21377..22117Clytia hemisphaericaexon
TCONS_00022755-exon-sc0000432-1510915933:21377..22117TCONS_00022755-exon-sc0000432-1510915933:21377..22117Clytia hemisphaericaexon
TCONS_00022755-exon-sc0000432-1575043694:21377..22117TCONS_00022755-exon-sc0000432-1575043694:21377..22117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:20334..22117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2775	13.6081	3.29432	2.44263	10.5538	12.2316	10.2851	12.1407	2.05171	3.44902	1.23336	2.71999	2.31325	3.48338	2.37005	2.01355	5.0916	2.9439	2.03358	0.748165	1.64578	1.84968	12.3159	11.0789	9.52272	11.9983	1.90814	2.93235	6.17931	7.21903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019128Dcc1
Vocabulary: Biological Process
TermDefinition
GO:0007064mitotic sister chromatid cohesion
Vocabulary: Cellular Component
TermDefinition
GO:0031390Ctf18 RFC-like complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007064 mitotic sister chromatid cohesion
cellular_component GO:0031390 Ctf18 RFC-like complex
Blast
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BLAST of TCONS_00022755 vs. Swiss-Prot (Human)
Match: DCC1 (Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 2.123e-66
Identity = 142/403 (35.24%), Postives = 216/403 (53.60%), Query Frame = 1 
Query:  247 EYKLLELTDELANLVKEGNILTIRGEGEDEAVLCTQNKTFDLKAADTSNALLLLPHIQTP---KTHNFQCDKHLVDLPVYSSFNSYFEVKLSRARLGRLKFILKEHCFSG-----ESLEGSQKLTTDDLLDAVQASKEELMEGLKQLGAIYVDNQWLLLEINYQEKAFSQILALMEEKCWSWKEIPFPETVQMLNELYPEFVLEHCLKTYGVETDTEKPFSQILALMEEKCWSWKEIPLPETVEMLNELYPEFVLEHCLKTYGVETDTEKRVFSLSEDQVCTYYAEYILRPALGKFNFHEFMTAWKESVPDGMTTSLGHLKGVALVDMKNHPPVIWHFSEHDLPDSPAERFTMLFKTRPRWKEEDITPYLVNVLGPNQKLSSLFLKYARSSKDENGDKVYSCR 1431
            ++ LLEL   L   +++G+ L IRG+ +++AVLC+++KT+DLK ADTSN LL +P  +TP   K  +  C+  ++   ++   N+Y+E++  R +L +LK +L E+ + G     E    S K TT+DLLD +QAS+EE+M  L+ L A  +   W +LE +Y+ K  + +  L++ + WS+ ++P    +Q L  L PE ++EHCLK YG                                                K Y    D  +  F L  D++C   A  +L+ A+ KFN  EF   W++SVP+GM TSL  LKG+ALVD  + P +I+     DLP+   ERF  LF  R +W EEDI PY+ ++ G  Q + +L  KY+ SS  +NG KVY+ R
Sbjct:   42 DFCLLELEPTLCQQLEDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKKEDSHCN--IIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYG------------------------------------------------KKY---VDEGEVYFELDADKICRAAARMLLQNAV-KFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSSM-QNGVKVYNSR 389
The following BLAST results are available for this feature:
BLAST of TCONS_00022755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCC12.123e-6635.24Sister chromatid cohesion protein DCC1 OS=Homo sap... [more]
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