TCONS_00022755-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022755-protein
Unique NameTCONS_00022755-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022755-protein ID=TCONS_00022755-protein|Name=TCONS_00022755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=430bp
MQRMEKINELATVAGVQQSKGPIQCLHYSDTWMKEEYKLLELTDELANLV
KEGNILTIRGEGEDEAVLCTQNKTFDLKAADTSNALLLLPHIQTPKTHNF
QCDKHLVDLPVYSSFNSYFEVKLSRARLGRLKFILKEHCFSGESLEGSQK
LTTDDLLDAVQASKEELMEGLKQLGAIYVDNQWLLLEINYQEKAFSQILA
LMEEKCWSWKEIPFPETVQMLNELYPEFVLEHCLKTYGVETDTEKPFSQI
LALMEEKCWSWKEIPLPETVEMLNELYPEFVLEHCLKTYGVETDTEKRVF
SLSEDQVCTYYAEYILRPALGKFNFHEFMTAWKESVPDGMTTSLGHLKGV
ALVDMKNHPPVIWHFSEHDLPDSPAERFTMLFKTRPRWKEEDITPYLVNV
LGPNQKLSSLFLKYARSSKDENGDKVYSCR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012779XLOC_012779Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022755TCONS_00022755Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019128Dcc1
Vocabulary: Biological Process
TermDefinition
GO:0007064mitotic sister chromatid cohesion
Vocabulary: Cellular Component
TermDefinition
GO:0031390Ctf18 RFC-like complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007064 mitotic sister chromatid cohesion
cellular_component GO:0031390 Ctf18 RFC-like complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.10coord: 262..289
e-value: 0.11
score: 11.7
coord: 189..237
e-value: 0.05
score: 12.8
IPR019128Sister chromatid cohesion protein Dcc1PFAMPF09724Dcc1coord: 247..397
e-value: 4.2E-39
score: 134.7
coord: 37..244
e-value: 4.6E-51
score: 174.0

Blast
[Close]
BLAST of TCONS_00022755-protein vs. Swiss-Prot (Human)
Match: DCC1 (Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 6.091e-69
Identity = 142/403 (35.24%), Postives = 216/403 (53.60%), Query Frame = 0 
Query:   36 EYKLLELTDELANLVKEGNILTIRGEGEDEAVLCTQNKTFDLKAADTSNALLLLPHIQTP---KTHNFQCDKHLVDLPVYSSFNSYFEVKLSRARLGRLKFILKEHCFSG-----ESLEGSQKLTTDDLLDAVQASKEELMEGLKQLGAIYVDNQWLLLEINYQEKAFSQILALMEEKCWSWKEIPFPETVQMLNELYPEFVLEHCLKTYGVETDTEKPFSQILALMEEKCWSWKEIPLPETVEMLNELYPEFVLEHCLKTYGVETDTEKRVFSLSEDQVCTYYAEYILRPALGKFNFHEFMTAWKESVPDGMTTSLGHLKGVALVDMKNHPPVIWHFSEHDLPDSPAERFTMLFKTRPRWKEEDITPYLVNVLGPNQKLSSLFLKYARSSKDENGDKVYSCR 430
            ++ LLEL   L   +++G+ L IRG+ +++AVLC+++KT+DLK ADTSN LL +P  +TP   K  +  C+  ++   ++   N+Y+E++  R +L +LK +L E+ + G     E    S K TT+DLLD +QAS+EE+M  L+ L A  +   W +LE +Y+ K  + +  L++ + WS+ ++P    +Q L  L PE ++EHCLK YG                                                K Y    D  +  F L  D++C   A  +L+ A+ KFN  EF   W++SVP+GM TSL  LKG+ALVD  + P +I+     DLP+   ERF  LF  R +W EEDI PY+ ++ G  Q + +L  KY+ SS  +NG KVY+ R
Sbjct:   42 DFCLLELEPTLCQQLEDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKKEDSHCN--IIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYG------------------------------------------------KKY---VDEGEVYFELDADKICRAAARMLLQNAV-KFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSSM-QNGVKVYNSR 389
The following BLAST results are available for this feature:
BLAST of TCONS_00022755-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCC16.091e-6935.24Sister chromatid cohesion protein DCC1 OS=Homo sap... [more]
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