|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022652 ID=TCONS_00022652|Name=TCONS_00022652|organism=Clytia hemisphaerica|type=transcript|length=1926bp
acaccgaTTATAAGTCTACtcaaaagtaaaatcaaaacatcaagAAATGA
TATCAAAATAACATGGTTGAACCGTCACTGAAACATTGAAAAACATCTCT
GGCGAATCTCGATGAAGATCGATTAAGGCCAGGATTAAATTTTAGTATTG
ACAACATCAAGTGTTGGTCgacaaagcaaaaaaaaaaagtcttaaatCTA
AACgttaaactttcaaaataaatgataTTACTTGTAGCCCAATGATGCCC
GCTTTGTTTCTCAATTGTACTCAGATATTTTTGGTTTCCAGGTTTTTTTG
GGCTCGCAGATAATAATCAAGATGTTACTTGGTTGCTAAGGGTCAACAAA
TATTAACAAACAAGAAGTCTCTACGCAtgtgcaaaaaccaaaaaagtcAC
ACTGAGGATAGACTTTAAATAGCCAAGCTGACACGTGACGTCAAAGTAAC
TGGAGAACGttggatgaacgttgaaacaacgtcacATATCAGCTTTAGAA
CACCTCTCTGCTTCAAGGGAATGAAATTTCGCGAACAAAACTTGAGTCTT
CTCCTAGATTAAATTAAGGAGTTTTCACTGAGTTATTATTTCTGTTTAGA
GAAAGATTCTTCAATCCCCGCCAAAGTAAATGGAAATTCTACTCGTTCTG
GTTTTCTATTGCTCTTTGTTTTTACAGGTCCTGCTACGACGTTGCTGAGT
CAGTTGAGATTTCTCACGCTCAAAGGACTCGAATAGAGGAGGTAATTCAA
TTGCCGTAGAAAATTTGAGCAATCCCATTACTTTTGGTCTTTGTTGTATT
TCTTgcgaaaatagaaaaatggGTTATTCACTGAAATTTAGGAATTTGCA
GTTTCTTCTTTCACCAACCTtcactttaaaaagattaaggAGTAAGGCTT
TATAcaagaaaattaatttgaacTTAAGGAGCCTTTTAAGAAAGTTATTC
GCTAAAAAGTTTGGTCAAGTTATTGTTCGTGAAATCGTTCCCTGTAAGCA
ATATTACGAAAAAATTTTACGAATACAAAATGTTTACTTAAAATGAATAT
ACCAATACACTATACGTCATAAACTACTCAAAAACTACTCAAAAACATGA
ATTTAAATGCTAAAATGTCAATCTTTTTCCTTTAAGATATCTTCTGCGAC
ACACCCATATTCAAGATGGCAGATTCAAGGGTTGTCTATGAATCATACAT
CtttaacaatttaacaatttttttgtttatttttttctctcctcCCCACC
Aacaatttttcttcaatcttttttatgaaatcattttttttcttcaccaa
AACTCCATTTTCTCCCAACTTTTTAATATCTTTCTCCAACTAATCAACCA
ATCATTTAAGACCAACATTTCATTTTCAGCAGCCAATTAGAACTCGTTCT
TTTActcttttaaccaatcaaatttctttaaacCTGGATTTCGTATCCAA
TGAAAGTGTTGTCctccaaaaataaaacttttctcaACCAATTAAAACAA
AACACACGCACTTTTTTTTCTTCCCATTCATTTCATTCAATGAGCAAGGA
TTCTTGCTTTTCGGTAGAACTCACCCCTCATTAAAAAGCGTCCACCATCT
TCAATACCAGAATGCTCCAGATCTTCGGTTGCTTAGCGacacaaaaaaag
tcaaaaaacataAACCAGTTGTGAGCTAAGAAAACGGCGTTCCACTTTTT
TCGGGACTTCTCTATCCTCAATAACATATGATCCAATCAATCGATAGGTC
gtaaaaatcgttaaaaatcatttttcacgaCTTCTTCTTTTGTTGTACCA
ATACGAGCAAGAGAGAGTTGAAAAAGTGGCGTGTAGTTGTTTTTCGCTTA
TCTAGTGATGATACACTTGAAAGCGcttactttttctttataagatttGT
CTATAGTCTCCCAAGAGACATTTCNc Run BLAST on NCBI transcript from alignment at sc0000429:172057..173982 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022652 ID=TCONS_00022652|Name=TCONS_00022652|organism=Clytia hemisphaerica|type=transcript|length=1926bp|location=Sequence derived from alignment at sc0000429:172057..173982 (Clytia hemisphaerica)
gNGAAATGTCTCTTGGGAGACTATAGACaaatcttataaagaaaaagtaa
gCGCTTTCAAGTGTATCATCACTAGATAAGCGAAAAACAACTACACGCCA
CTTTTTCAACTCTCTCTTGCTCGTATTGGTACAACAAAAGAAGAAGtcgt
gaaaaatgatttttaacgatttttacGACCTATCGATTGATTGGATCATA
TGTTATTGAGGATAGAGAAGTCCCGAAAAAAGTGGAACGCCGTTTTCTTA
GCTCACAACTGGTTtatgttttttgactttttttgtgtCGCTAAGCAACC
GAAGATCTGGAGCATTCTGGTATTGAAGATGGTGGACGCTTTTTAATGAG
GGGTGAGTTCTACCGAAAAGCAAGAATCCTTGCTCATTGAATGAAATGAA
TGGGAAGAAAAAAAAGTGCGTGTGTTTTGTTTTAATTGGTtgagaaaagt
tttatttttggagGACAACACTTTCATTGGATACGAAATCCAGgtttaaa
gaaatttgattggttaaaagagTAAAAGAACGAGTTCTAATTGGCTGCTG
AAAATGAAATGTTGGTCTTAAATGATTGGTTGATTAGTTGGAGAAAGATA
TTAAAAAGTTGGGAGAAAATGGAGTTttggtgaagaaaaaaaatgatttc
ataaaaaagattgaagaaaaattgtTGGTGGGgaggagagaaaaaaataa
acaaaaaaattgttaaattgttaaaGATGTATGATTCATAGACAACCCTT
GAATCTGCCATCTTGAATATGGGTGTGTCGCAGAAGATATCTTAAAGGAA
AAAGATTGACATTTTAGCATTTAAATTCATGTTTTTGAGTAGTTTTTGAG
TAGTTTATGACGTATAGTGTATTGGTATATTCATTTTAAGTAAACATTTT
GTATTCGTAAAATTTTTTCGTAATATTGCTTACAGGGAACGATTTCACGA
ACAATAACTTGACCAAACTTTTTAGCGAATAACTTTCTTAAAAGGCTCCT
TAAgttcaaattaattttcttgTATAAAGCCTTACTccttaatcttttta
aagtgaAGGTTGGTGAAAGAAGAAACTGCAAATTCCTAAATTTCAGTGAA
TAACccatttttctattttcgcAAGAAATACAACAAAGACCAAAAGTAAT
GGGATTGCTCAAATTTTCTACGGCAATTGAATTACCTCCTCTATTCGAGT
CCTTTGAGCGTGAGAAATCTCAACTGACTCAGCAACGTCGTAGCAGGACC
TGTAAAAACAAAGAGCAATAGAAAACCAGAACGAGTAGAATTTCCATTTA
CTTTGGCGGGGATTGAAGAATCTTTCTCTAAACAGAAATAATAACTCAGT
GAAAACTCCTTAATTTAATCTAGGAGAAGACTCAAGTTTTGTTCGCGAAA
TTTCATTCCCTTGAAGCAGAGAGGTGTTCTAAAGCTGATATgtgacgttg
tttcaacgttcatccaaCGTTCTCCAGTTACTTTGACGTCACGTGTCAGC
TTGGCTATTTAAAGTCTATCCTCAGTGTgacttttttggtttttgcacaT
GCGTAGAGACTTCTTGTTTGTTAATATTTGTTGACCCTTAGCAACCAAGT
AACATCTTGATTATTATCTGCGAGCCCAAAAAAACCTGGAAACCAAAAAT
ATCTGAGTACAATTGAGAAACAAAGCGGGCATCATTGGGCTACAAGTAAt
atcatttattttgaaagtttaacGTTTAGatttaagactttttttttttg
ctttgtcGACCAACACTTGATGTTGTCAATACTAAAATTTAATCCTGGCC
TTAATCGATCTTCATCGAGATTCGCCAGAGATGTTTTTCAATGTTTCAGT
GACGGTTCAACCATGTTATTTTGATATCATTTcttgatgttttgatttta
cttttgaGTAGACTTATAAtcggtgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022652-exon-sc0000429-1491911889:172057..173982 | TCONS_00022652-exon-sc0000429-1491911889:172057..173982 | Clytia hemisphaerica | exon |
| TCONS_00022652-exon-sc0000429-1510915933:172057..173982 | TCONS_00022652-exon-sc0000429-1510915933:172057..173982 | Clytia hemisphaerica | exon |
| TCONS_00022652-exon-sc0000429-1575043694:172057..173982 | TCONS_00022652-exon-sc0000429-1575043694:172057..173982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000429 | supercontig | sc0000429:172057..173982 . |
Blast
The following BLAST results are available for this feature:
|
