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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022644 ID=TCONS_00022644|Name=TCONS_00022644|organism=Clytia hemisphaerica|type=transcript|length=4525bpRun BLAST on NCBI protein sequence of TCONS_00022644-protein >TCONS_00022644-protein ID=TCONS_00022644-protein|Name=TCONS_00022644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=938bp MALSASAQTFFPKNDSKSENKPKEKAPLKSSLSVDVPEFVPNTEKNIQPKRun BLAST on NCBI transcript from alignment at sc0000429:234170..245875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022644 ID=TCONS_00022644|Name=TCONS_00022644|organism=Clytia hemisphaerica|type=transcript|length=11706bp|location=Sequence derived from alignment at sc0000429:234170..245875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000429:234170..245875- >TCONS_00022644 ID=TCONS_00022644|Name=TCONS_00022644|organism=Clytia hemisphaerica|type=CDS|length=39438bp|location=Sequence derived from alignment at sc0000429:234170..245875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022644 vs. Swiss-Prot (Human)
Match: SBP2L (Selenocysteine insertion sequence-binding protein 2-like OS=Homo sapiens GN=SECISBP2L PE=1 SV=3) HSP 1 Score: 169.859 bits (429), Expect = 1.844e-42 Identity = 73/157 (46.50%), Postives = 110/157 (70.06%), Query Frame = 3
Query: 2187 LHSRKFREYCDHMATKEINDLTYQLLTTLLRFQDRVYHENPTKFRQKRRFVLGLREVLKHTKLRRIKAVIVAPNLEKISSEGGLDDYLRSILLLCDQDEIPKIFAMSRHGLGKTLKKKAPVSVIGIFNYDGAQDTYKELINHVENAKKLYSDKVHAI 2657
+HS++FREYC+ + KEI++ LL L+ FQ+R+Y ++P + + +RR V+GLREV KH KL +IK VI++PN EKI S+GGLD+ L +++ + + EIP +FA+ R LG+ + K PVSV+GIFNY GA+ + +L+ E A+K Y D V A+
Sbjct: 669 IHSKRFREYCNQVLCKEIDECVTLLLQELVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAESLFNKLVELTEEARKAYKDMVAAM 825 The following BLAST results are available for this feature:
BLAST of TCONS_00022644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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