TCONS_00022628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022628
Unique NameTCONS_00022628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022628 ID=TCONS_00022628|Name=TCONS_00022628|organism=Clytia hemisphaerica|type=transcript|length=878bp
atatagttgttcttatgaaaaacatctacaatgaaaatgtaaaatatggg
TCTCCATGGCAACAGCTGGTTTGTTTTGTGCTTGGTCAGTTGTACTTTTT
GTGGAATCGTTAAATGCCAACCGTTTGTGGATGTTTATCTCGCTACATCA
CAACCTTTTGAGAATGGAACACAGCGCGTACACATCTCACCTCATCCAGG
TCGTCAAATCAATGAAGCTGatataaacaaagatttagGTTTCAAAGATG
ACGAGGAGAAGTTTGAACACGTGACCAATGGAAAGACACGTGACATTAAA
GTTGGAATTCGTTTGTGGAAGAAACGGAGAGGACGATTGTATATACCGTA
CGAAATTAGTAAAAAATTTTCATGGTTCAGACGTCAAAAACTGAAGAGAG
CGATCCGTAAAATGAACAGTTATTTACATTGTAACAAAGGAAGGAATGTT
TGgatcaaaagaaacaaaaagaaacataaacattttGTAAAGTTTCAACC
AGGACCTGGTTGTTCTGGGACAGTTGGCAAATCAAAATGGCGCATTAATT
ACATCAAACTACACAACGCATGTATTGATTACAGTGATAGCGGTATCGTT
CTCCACGAGATGATGCACTCGATGGGATTCTATCATGAAATGCAACGTGG
TGATCGTgataaatatatcaaaatacaccataaaaacatacaaaaagGAA
TGACGTTCAATTTTCATAAATTCAAGACCTATTTGACTACGTGTTATGAT
GTACCCTTTCGATGCATTTACAAAGAACGGTCGATTGACTTACGAACCGA
AGTTACCGCTCCTCGAGAGAGAGAAAGTCggtcaaagaaattcattatcA
CAAATCGATATTCGACAGTTGAATGGTC
Run BLAST on NCBI

protein sequence of TCONS_00022628-protein

>TCONS_00022628-protein ID=TCONS_00022628-protein|Name=TCONS_00022628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MGLHGNSWFVLCLVSCTFCGIVKCQPFVDVYLATSQPFENGTQRVHISPH
PGRQINEADINKDLGFKDDEEKFEHVTNGKTRDIKVGIRLWKKRRGRLYI
PYEISKKFSWFRRQKLKRAIRKMNSYLHCNKGRNVWIKRNKKKHKHFVKF
QPGPGCSGTVGKSKWRINYIKLHNACIDYSDSGIVLHEMMHSMGFYHEMQ
RGDRDKYIKIHHKNIQKGMTFNFHKFKTYLTTCYDVPFRCIYKERSIDLR
TEVTAPRERESRSKKFIITNRYSTVEW
Run BLAST on NCBI

transcript from alignment at sc0000429:200791..210165+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022628 ID=TCONS_00022628|Name=TCONS_00022628|organism=Clytia hemisphaerica|type=transcript|length=9375bp|location=Sequence derived from alignment at sc0000429:200791..210165+ (Clytia hemisphaerica)
atatagttgttcttatgaaaaacatctacaatgaaaatgtaaaatatggg
TCTCCATGGCAACAGCTGGTTTGTTTTGTGCTTGGTCAGTTGTACTTTTT
GTGGAATCGTTAAATGCCAACCGTTTGTGGATGTTTATCTCGCTACATCA
CAACCTTTTGAGAATGGTGTGTTCCTAAGAGGAATagttcataaattacg
tcacgaacatcgcttgcctcgtattcaaacaatttccatggtgaATATAT
CCcgtgagacattaaatgatttttttatgaatagagaacagttgtaataa
aatccgctgggagttaatcaccatggcaataatttcaaaacgaggcaagt
gatgctcgtgacgtaatttatgaaaaggtctatctttGATTATCTTCATC
ACATAACCCTTTTGAAATTCATGAAACTATAATGAAAAGggtgaaaagat
aaaaatacctcctaaatttaaaaaatagtgTGATATCCTATGAAATTTAG
TGTTtcagagtccgcgaagccttaaaatgttcttaacttgtcttaatatt
ttggtcttGGAAGCCTTATGAGGCTGACCCTGTTAGTGAAGTTAATTTCT
GTATTACGTGCGCGTGTATTCTTTTCTTTGAAGGAACACAGCGCGTACAC
ATCTCACCTCATCCAGGTCGTCAAATCAATGAAGCTGatataaacaaaga
tttaggtatgaaaaaattttaacGCACTTTCGGATAGTTTTTTATTCGAG
AATGTAACCAGGGTTTGTAACAgttgcttttattttttcaacttgCGAAA
AGTCCCATTCGACTTGGAGTTTGCTTGGGTGAATGACGGACATCATTCGC
AAATGTCTAGAATTTGCCTTTCGGTTCACGTGTATTTTGGCCCAGGTGAA
CTAACCCCAATGTCCTTATACCATTATAAGTAAATAGATGAAACTTGaat
tttctcaagcaagaaagaATTacaaatgacggattgaatcaaaccctttc
tttgtttttaagcgGCTGTTTTCTAGCAAtaggttttactttcaatctgg
cgtttgtgtgaaaaacatgccggtcacgcgttttggatggggaATAAGTG
ACTTCATTTCCAATGAAGAAtaataagcccgaagggctagaagtcaatct
ccttggtaggatttgaagccaacaaatcctaccaaagttgcgcggtctTG
AGCGGCCCgcctagtttttacacaaatgacagattgaaactaaaatttac
cgctaaatttcgaaaaaaatatcaatcgtaaacaaaggaattgctagatt
caatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGttaaaaatgcggc
gcattttttaaggcttcactttttcttgcctgagaaaggttagagattga
actctagcccttcgggctttaaactcaatgttcatttcccatccaggagt
tgcGGGTCTAGCCTATcaggctttgaaatcaatggtagATAGGTGCTTTG
GTACACTACATACTATAAATCTGCTTTTTGTGATAGGTTTCAAAGATGAC
GAGGAGAAGTTTGAACACGTGACCAATGGAAAGACACGTGACATTAAAGT
TGGAATTCGTTTGTGGAAGAAACGGAGAGGACGATTGTATATACCGTACG
AAATTAGTAAAAAATGTAAGTTAGGAAAAtgataggctacgtcatatctt
ccttcgtttcgagcgtaaaactcctactcttcgggatatgagcactgctc
ttgttttgaatattgaaattctccggataaatcgcatgcgcactgatgTT
TTAATGAagcaatagagagtttcgaaacctaagccaatcagctgtgtttt
aacattcttttatttgaaatctgtattgataaacatctttggtgaaagtt
gtctattattCTTAAACCTATTGATAAGCAATACCCGTTGGGGGTTACTA
GTGGCGGCCTATAcaagtgcctatagaccaagagtaaggcctaaaagcct
ggagctgtctattgtatAGACTATTAAAATGGGGAATTGAAAATAAATGT
CTATGGGAAGACATGGTACTAAtttcaaatttcgatttttactGTGGAGA
TTAAAGTTTAGTCTAGATCATTAATGGAGATGAAATATCAGTGCGTTCTA
TTGGGTGTGATTTGCATTGATAAATTAATTTTATTGTAAAACAAAATACA
ATAgagtctttttaactcgaaactcTATTTTATTctaaactcgaacaagt
tttctcgtccctgtAGTTAAGAAAGGCCTCACAAACCTTACTTNctcgaa
caagttttctcgtccctttaGTTAAGAAAGGCCTCACAAACCTTACTCGA
AATTTCTTTAGCTGGACCCACACCACGTGTGGATTCGGATTATAGAGACT
TCGCTTCTGTTATTAATTTTGATCGAATTTTTATCATAGTTTCATGGTTC
AGACGTCAAAAACTGAAGAGAGCGATCCGTAAAATGAACAGTTATTTACA
TTGTAACAAAGGAAGGAATGTTTGgatcaaaagaaacaaaaagaaacata
aacattttGTAAAGTTTCAACCAGGACCTGGGTAAGATATACGCTAGCCT
ACCTAGCCTCCTTTCGTGTCCAATATCTTTCGACTggattgttttttttc
gaaaaagaatttCACAGCTGACATGGGCAAAAATTTAAGTTTCTCACGTC
CAAAAATGGTGTTTATAGCATTGCTAgataaaaagctgatttttttcatt
ttcatttttcaccttcgtgtttgaaaattttagaaaagttttATACGCAT
AATAGTCCATTCCGGATtacctttccaaaaagtataaaatcgcTATCTAT
GTCGAAATCTATTAAAAGTAATAcgcaattgaaaatttattaccagctaa
tttgaaatgtacTTTAACTATTAGAGGCTGTAGTTTTTGATGCAATAATT
CTATGCTGCAATAGACcttattaaattttttgatttttcttataaagcGA
TTCATTGTGGAATTGTTTCGAGGGTATTATAATAGAATtacctcgaggaa
ttcctaagagatttctattgtaatacactcgaaacgaTCCCTAATCCCAA
ATCCGCTAATTTTCATTAGCGACAAGGATTTTCGCTTGTatccggggggg
gggactaTCAGATATGAGATCTACCATATGTGTGGCTCAAAACTCAGGCC
TTTAAAATCAGTTTCGTatatcgcaaaaaaaaattactcaaaTACCAGTA
CATTTAGACacttacggtgcattttcttggaaatttaTGTCCACTTAAAG
GCGAAAATGGTCTTATCACTTCAAATTTTCGCGTTTTGCCACTTTTTACA
CCTTTACAGTGAATTTGTTAAACTTTATTTCATTACGACCCCTACATGAC
ACTTTAAGAAGCCTGAAAACCTATCTCCCTTTAAGGGAGTTGCCATAGAA
tttgttttgctttatttcCGGCCGCACTGCCAAGCCAACTTTAACGcgaa
ttttgtaaaaatcagatagaaaatcaacaaaacatcaGGTTAAAATTACg
ccaaagttttatttttgatgaaaacgGATTCGAGGATTTATCAAATAACA
CTGTNCgccaaagttttatttttgataaaaaaggatTCGAGGATTTATCA
AATAACACAGTGTATAGTACTTACCTGAAAATATGTATTGAATAAATAGA
ACCGAAAATTTTAAGTTAACAAATGAAGCTCCGAAATTTACAAGAGGGGA
ATATTTTAGATCgagattttcttcattttctttttcaacacCAATCGAAC
GAGTCTAGCGTTGAGTTGTATGACGATTCTACCCAATGCGCGTTGTCTTT
CCTCCATCGCTTTCACCTTCACAAtcaattctgtaaaaaaaacaaaattg
gagTATAAGATATTGAATATTGAAAGTTAATGATGATTTAGGCTACATCT
CATAACATTAGCAGAGTTCCCGGATTTACAATTTACAAAATAGAGCTCAT
AAAATCGACTGGAATAACAATGGACAGGAGACTGTTTCTTTATAAACTGA
TGTATAAAAAAAGGACTGGTTCGGGCTgtgatttctgcctcaaaatttat
agtgggaaattcgaatttatcGTATAAAAATAACTCACTTCGAATGATGG
TtagaattttggattttctgatttttccttTGGTGGTCGTTTCACGTGTT
GGCTTTGTTGTGAATGTTTCTTTTGTCGTGCGTGGTTCTTCGGTGAAGAT
GTCGGTTGCCATGGTAACTACATCTTCAGTTGTCTCAACATTGTCAGTCA
TTTGAGTGTTTTCTGAAGTTGTTGCAGGGATCTCCTCGGTTGAGCTTGAT
TGAATTATCTCACTTGTTTGATCGGGCTCGCGGGTTGTTTGTGGAATGTT
TTCGGTGGTTGCTTTAGGTTCAGTGGTCGAGACAATCATATTGATGTCAG
TGGAGGTTGTAGGGACACTGTCGGTAGTTTTCGGGATGTTCTCGGTAGTA
GTTGTCGGAAAATTGTCGATTGGAGTCGTTTCAGCCAGAGTGGTCGAAGT
CGAAATCCGTTTTGTCGGTGATACACTCTCGTCTCCATTGTAAATCAAGT
GTCCTACACCTTGGCTATCGAGATCTAGTTCGTTAAGAATAGAGTCTTCG
ACATCTTGCAAATCTTGATAAAAATCGTCGTTTTCGTCTGTCGGATTTTG
AAAGACGTCATTCTCGTAATGATCGATAGTCTTCGATTGACAACACACTA
TAATTTGAAAGATAAGAATGTTAGGACAAAAGTTTGTATTCAAAAATCCT
ACAAAATAATTCAACATTTAATACATTTCATACCCCTTTTCATAGCCCTG
GTGGTCAAACCTTTTTacacagcggggataaaaatattaaaatcacaATT
GGGTAGAAGTTGTAGTGTTCCAAGCTTATATAATCCAGTAGGGATGGATT
tggagtgaaatttttcaacattgaatttcaaataagGATAAAATGAAAGT
CGATTTCCAAGCGGACGGGGGCtcaaccgggtctgtgacaaagGGGTGTT
TTTGATTGAACTAGTGGTCCAGTCTGAAACAGAACACAGCGTTCAAACTC
GAACTTCTTAAATTTACTCTTACATGTTGCAAAACTAAAGAGTTTGAAGA
AGGCGATTTATAGAAATTAGTCAAAAACTCAAGCTGATTCAAACATATAG
ATAAACAATCATTACTGATAATGAAACGAGAATGAAACTCAACACTCACC
GAAAACAGCACACAAAGCTACGACTGTGAAAATATTCATCATGCAATATT
CTTGCAAACTCTCacagtatttattttcaatgtccTTCACTAGAAGTGAG
CTGGTATGATGCACaagaaatttctaccctttTTATGTGTTTCCATTAAG
TCTGGTTCAATTAAGCTCCTGAGGGAATTATGAAATTTGATTTATGGTCA
AATGAATATTTAATTACATCACTTGAGAATTCATGGAATACGTTCCATTT
GTACCGGGAATTATCTATCTTTTGTCTTCTTGACTGTCTCATGGGAATAG
TTCAATATTATATTGCTTTCCCAAGAGAGCAGTGGATTGTTAAGATCAAC
TATAAAAAGAGTAGAAAAACAAAATATGGACAATCACAATTCAAAGACAC
AACGTGCTTGTTAGAAAACTTGGAGCAGTTTAAAGATGAAGGCTTTCGCc
acaacaattttgttacttttggtCAACATCTCCATGATGGAAACAAGATC
CATCAGCGATAAAGAATTAAGTAAGTGACTTGCAAAGTTTATtaaataat
tgttttgtttgacCATCTTTAAGGTTTTCACCTCTTGACTCTCGAATATT
GAGATAATTTAGCAAAAAGGTCAAAATTCCTTTGCAAACCCTTATATGTC
ATCTATAGAATTTATTACTTTTGTTTGCAAGTGTCTATCAAAGCTTTCTA
CGATTACTGTTGGGTATTCCTTATCCTAATCTGTGTCTCTTTTCTTTTCA
GTTGACCTCCTCAAGGATGTTTTGAAACGAGGtgcccaaggacccaagtc
gttcgtccaaggtggtgACGCTCAAGGACCCAaatcgttcgtccaaggtg
gtgacgcccaaggacccaagtcgttcgtccaaggtggagacgcccaagga
cccaagtcgttcgtccaaggtggagacgtCAAATATCCTTTCACTGATTA
TACAGGACCGCCCTACGACGCCAAACAAACCAAAACCTcacaaaataaca
aaggcaaagATGTTGTTATAAACTTGAATGTGTTCTAATTATTTTATtgg
ataatttttgttttgttaagttAAAAAATACATCATTTTagtcaaaaaat
aaatcttgAATGTATTTGTCCGTATTTGTCTTTCACATTATAATCATAAA
TAGGTGCGTGTTTTTAAACTATGTTCGTTTCAAGTGTGCACTAATTTTTC
TTGCTTCTTTTTCCAATCTCTATTTAATTCtcatttatatattttgaact
ttgaaaGTATAATTCAAAGCACTACTATAATTTTTAcgaaaaagttttga
agttgaaaattatgaaaagaaACCTCTGATGCCGAAATGTGAAAAAGGGT
TGCATCCAGAGTAACAGCATCTATACCATGAATGGAgtttttgtatcttt
ttctccttcattttaattttgatttttgaaagttttcgaaATTATTTGGT
CAAATAATaattattttctcaaataatACGGCTCAAATTTAATCGCTCAA
TGACTGctaaaaacctcaaaaaaaagcaaaatagaGCCTTTTTTCTTCAG
TTCTGAATGctattcaaaataattattatgCCACTCATTTTAAATAAATC
GCAATCTCAACATATCTGCAGCGGGGACTAAAAGCCTGTAACTTTCGTAA
TAATTCGAATGAAATCGGTTTTGTgtttgttggaaagataaatagGTGTG
GAATAATATCAAGTAGAAAAAAACTGGAAAGGAGtcggaaaatgaagatg
atgATTGCAGAAAAAAGAAACTTAATGACGAACTGTGCTGTAAATTCCGT
TCTTGCAAGAGTAATTTTTCAATTCCTTGACAACATTTCTGGTTATATTC
AAATATATTAACTCACTCGAAAGATAAAGCCTAAAAGGTTACCAATCGTT
CGCtttaaaataagcaaaaaaataatctaaacCCATTTCGTAGCCAATCA
GACAGTATTTTTAGGCTGTATTTTTTCCCTGGATACATTTTTTTGACAAT
TATTTTACAGTGATAACCCTCTAACATTGAATATTTTtactataaaaatg
aagatcaggacaactttaaaaaaagttaaatttttctttaatttttcatc
ttcatcttcaacaAGTAGAAAACCGCTATTTGATTTGATGAAATCTATCG
GAAGTCTTCACTCAGAGACACACCAATAAATGACTGACTTAagttcaaat
tttatcaaaaattatcccATTTTTTAATCTTAATTTGAAAAGGACTTTTG
TGATAAAGGCCTGAGCAAACCGATCCAAAATTTCATCCAACATAtgcctt
ttttctgatgttggatgaaataGTGGACTGGTTTGCCCCGACCTTAAATA
AGTAGGCTTTGTAGAATACAAATGGGTCCGTGATACAGGGTTGTTAAGTA
AAGANAAGGCTTTGTTGAATACAAATGGGTCCGTGATACAGGGTTGTTAA
GTTAGGATTTTTGTTGTACaaaactttccaaaatttcctgtTTTTCTATA
GTTGTTCTGGGACAGTTGGCAAATCAAAATGGCGCATTAATTACATCAAA
CTACACAACGCATGTATTGATTACAGTGATAGCGGTAAGTGACCGACATC
CGAATGATACAAGGAGTATAAtctagcaagctagacaacTAATTCAGATA
TAGTAGAAAGAAATAAAGCGAAAAGTAATGTAGGGGACAAATCCCGCAAC
TGtcatcgtattatcatataacgcctaaactactgtattacacgcattat
aaacgactccagccTATAAGGAGGAATATTAACCTATTTTAtctatttca
taggattttaCTATTAAATTATTTTAGGTATCGTTCTCCACGAGATGATG
CACTCGATGGGATTCTATCATGAAATGCAACGTGGTGATCGTgataaata
tatcaaaatacaccataaaaacatacaaaaaggtTGGCCTAGTTTTAAAA
TcactatacacgtttttttataagaacataacgcCTCGATGGccaaagtt
aagaacattttatgaaCTTTATACTCTTAGCATTTATCTTTTTAGGAAAT
CGCACAAATATATTtacaaattggtgaaaataagaacattttaagaacat
ttttaggctttttaaGAAGATCCGCAAACTtcaaaatgttttgatgttct
tataaaaaacgttcaCTGTGGGGTATCTGTATAATGGTTCATGGATCTCG
AAGCCATGGTTGAGAATTCTTGGCTCTGTCACTTTACAGAGATTCAGGAG
TTTACCATTTATTCCTAATTGAAGTTTCATATTGATTATCCATTTTTTAT
TCAGGAATGACGTTCAATTTTCATAAATTCAAGACCTATTTGACTACGGT
AAGtttcacaaaatttttgaatagaaATATTTTCTGTCTATTAAGCCTCC
GTGTAACTGATAGCAACACCAACACACACAAACATTGTTTAATCAATTTC
GTGATCGCTTTTCTTTACTGTTCGAATAATTATATTCATAGAGTTTCTGG
TAAAAAAGACAAATCAAAGAGATTTGAAGCTCTCTAATTTGATATCCAAG
GGGCCttggattttcattgaataagagagctaagtttggattcgcaaaaa
ttggattccttaaaagttgttttcttattttcagcatgaacagttcctta
acaattccttattttttggaccattttcagcctccagttccttataaacg
tgttccttattaaaaaaaaacgtgtactatgTTTCCCTTTACCGAGAGAG
CTAAATTGAAATATGACAGCTAAAAGCATCAGgataaacaaaatcaaatc
ctTTTCATTTTCAACCCAATATATATCCAGTATTATTTCTGTTACAACAT
gatttacttttcattttttagccatttgacTTCAATAGTGTTATGATGTA
CCCTTTCGATGCATTTACAAAGAACGGTCGATTGACTTACGAACCGAAGT
TACCGCTCCTCGAGAGAGAGAAAGTCggtcaaagaaattcattatcACAA
ATCGATATTCGACAGTTGAATGGTC

Coding sequence (CDS) from alignment at sc0000429:200791..210165+

>TCONS_00022628 ID=TCONS_00022628|Name=TCONS_00022628|organism=Clytia hemisphaerica|type=CDS|length=6648bp|location=Sequence derived from alignment at sc0000429:200791..210165+ (Clytia hemisphaerica)
atgggTCTCCATGGCAACAGCTGGTTTGTTTTGTGCTTGGTCAGTTGTAC
TTTTTGTGGAATCGTTAAATGCCAACCGTTTGTGGATGTTTATCTCGCTA
CATCACAACCTTTTGAGAATGGAACACAGCGCGTACACATCTCACCTCAT
CCAGGTCGTCAAATCAATGAAGCTGatataaacaaagatttagGTTTCAA
AGATGACGAGGAGAAGTTTGAACACGTGACCAATGGAAAGACACGTGACA
TTAAAGTTGGAATTCGTTTGTGGAAGAAACGGAGAGGACGATTGTATATA
CCGTACGAAATTAGTAAAAAATTTTCATGGTTCAGACGTCAAAAACTGAA
GAGAGCGATCCGTAAAATGAACAGTTATTTACATTGTAACAAAGGAAGGA
ATGTTTGgatcaaaagaaacaaaaagaaacataaacattttGTAAAGTTT
CAACCAGGACCTGGTTGTTCTGGGACAGTTGGCAAATCAAAATGGCGCAT
TAATTACATCAAACTACACAACGCATGTATTGATTACAGTGATAGCGGTA
TCGTTCTCCACGAGATGATGCACTCGATGGGATTCTATCATGAAATGCAA
CGTGGTGATCGTgataaatatatcaaaatacaccataaaaacatacaaaa
agGAATGACGTTCAATTTTCATAAATTCAAGACCTATTTGACTACGTGTT
ATGATGTACCCTTTCGATGCATTTACAAAGAACGGTCGATTGACTTACGA
ACCGAAGTTACCGCTCCTCGAGAGAGAGAAAGTCggtcaaagaaattcat
tatcACAAATCGATATTCGACAGTTGAATGGatgggTCTCCATGGCAACA
GCTGGTTTGTTTTGTGCTTGGTCAGTTGTACTTTTTGTGGAATCGTTAAA
TGCCAACCGTTTGTGGATGTTTATCTCGCTACATCACAACCTTTTGAGAA
TGGAACACAGCGCGTACACATCTCACCTCATCCAGGTCGTCAAATCAATG
AAGCTGatataaacaaagatttagGTTTCAAAGATGACGAGGAGAAGTTT
GAACACGTGACCAATGGAAAGACACGTGACATTAAAGTTGGAATTCGTTT
GTGGAAGAAACGGAGAGGACGATTGTATATACCGTACGAAATTAGTAAAA
AATTTTCATGGTTCAGACGTCAAAAACTGAAGAGAGCGATCCGTAAAATG
AACAGTTATTTACATTGTAACAAAGGAAGGAATGTTTGgatcaaaagaaa
caaaaagaaacataaacattttGTAAAGTTTCAACCAGGACCTGGTTGTT
CTGGGACAGTTGGCAAATCAAAATGGCGCATTAATTACATCAAACTACAC
AACGCATGTATTGATTACAGTGATAGCGGTATCGTTCTCCACGAGATGAT
GCACTCGATGGGATTCTATCATGAAATGCAACGTGGTGATCGTgataaat
atatcaaaatacaccataaaaacatacaaaaagGAATGACGTTCAATTTT
CATAAATTCAAGACCTATTTGACTACGTGTTATGATGTACCCTTTCGATG
CATTTACAAAGAACGGTCGATTGACTTACGAACCGAAGTTACCGCTCCTC
GAGAGAGAGAAAGTCggtcaaagaaattcattatcACAAATCGATATTCG
ACAGTTGAATGGatgggTCTCCATGGCAACAGCTGGTTTGTTTTGTGCTT
GGTCAGTTGTACTTTTTGTGGAATCGTTAAATGCCAACCGTTTGTGGATG
TTTATCTCGCTACATCACAACCTTTTGAGAATGGAACACAGCGCGTACAC
ATCTCACCTCATCCAGGTCGTCAAATCAATGAAGCTGatataaacaaaga
tttagGTTTCAAAGATGACGAGGAGAAGTTTGAACACGTGACCAATGGAA
AGACACGTGACATTAAAGTTGGAATTCGTTTGTGGAAGAAACGGAGAGGA
CGATTGTATATACCGTACGAAATTAGTAAAAAATTTTCATGGTTCAGACG
TCAAAAACTGAAGAGAGCGATCCGTAAAATGAACAGTTATTTACATTGTA
ACAAAGGAAGGAATGTTTGgatcaaaagaaacaaaaagaaacataaacat
tttGTAAAGTTTCAACCAGGACCTGGTTGTTCTGGGACAGTTGGCAAATC
AAAATGGCGCATTAATTACATCAAACTACACAACGCATGTATTGATTACA
GTGATAGCGGTATCGTTCTCCACGAGATGATGCACTCGATGGGATTCTAT
CATGAAATGCAACGTGGTGATCGTgataaatatatcaaaatacaccataa
aaacatacaaaaagGAATGACGTTCAATTTTCATAAATTCAAGACCTATT
TGACTACGTGTTATGATGTACCCTTTCGATGCATTTACAAAGAACGGTCG
ATTGACTTACGAACCGAAGTTACCGCTCCTCGAGAGAGAGAAAGTCggtc
aaagaaattcattatcACAAATCGATATTCGACAGTTGAATGGatgggTC
TCCATGGCAACAGCTGGTTTGTTTTGTGCTTGGTCAGTTGTACTTTTTGT
GGAATCGTTAAATGCCAACCGTTTGTGGATGTTTATCTCGCTACATCACA
ACCTTTTGAGAATGGAACACAGCGCGTACACATCTCACCTCATCCAGGTC
GTCAAATCAATGAAGCTGatataaacaaagatttagGTTTCAAAGATGAC
GAGGAGAAGTTTGAACACGTGACCAATGGAAAGACACGTGACATTAAAGT
TGGAATTCGTTTGTGGAAGAAACGGAGAGGACGATTGTATATACCGTACG
AAATTAGTAAAAAATTTTCATGGTTCAGACGTCAAAAACTGAAGAGAGCG
ATCCGTAAAATGAACAGTTATTTACATTGTAACAAAGGAAGGAATGTTTG
gatcaaaagaaacaaaaagaaacataaacattttGTAAAGTTTCAACCAG
GACCTGGTTGTTCTGGGACAGTTGGCAAATCAAAATGGCGCATTAATTAC
ATCAAACTACACAACGCATGTATTGATTACAGTGATAGCGGTATCGTTCT
CCACGAGATGATGCACTCGATGGGATTCTATCATGAAATGCAACGTGGTG
ATCGTgataaatatatcaaaatacaccataaaaacatacaaaaagGAATG
ACGTTCAATTTTCATAAATTCAAGACCTATTTGACTACGTGTTATGATGT
ACCCTTTCGATGCATTTACAAAGAACGGTCGATTGACTTACGAACCGAAG
TTACCGCTCCTCGAGAGAGAGAAAGTCggtcaaagaaattcattatcACA
AATCGATATTCGACAGTTGAATGGatgggTCTCCATGGCAACAGCTGGTT
TGTTTTGTGCTTGGTCAGTTGTACTTTTTGTGGAATCGTTAAATGCCAAC
CGTTTGTGGATGTTTATCTCGCTACATCACAACCTTTTGAGAATGGAACA
CAGCGCGTACACATCTCACCTCATCCAGGTCGTCAAATCAATGAAGCTGa
tataaacaaagatttagGTTTCAAAGATGACGAGGAGAAGTTTGAACACG
TGACCAATGGAAAGACACGTGACATTAAAGTTGGAATTCGTTTGTGGAAG
AAACGGAGAGGACGATTGTATATACCGTACGAAATTAGTAAAAAATTTTC
ATGGTTCAGACGTCAAAAACTGAAGAGAGCGATCCGTAAAATGAACAGTT
ATTTACATTGTAACAAAGGAAGGAATGTTTGgatcaaaagaaacaaaaag
aaacataaacattttGTAAAGTTTCAACCAGGACCTGGTTGTTCTGGGAC
AGTTGGCAAATCAAAATGGCGCATTAATTACATCAAACTACACAACGCAT
GTATTGATTACAGTGATAGCGGTATCGTTCTCCACGAGATGATGCACTCG
ATGGGATTCTATCATGAAATGCAACGTGGTGATCGTgataaatatatcaa
aatacaccataaaaacatacaaaaagGAATGACGTTCAATTTTCATAAAT
TCAAGACCTATTTGACTACGTGTTATGATGTACCCTTTCGATGCATTTAC
AAAGAACGGTCGATTGACTTACGAACCGAAGTTACCGCTCCTCGAGAGAG
AGAAAGTCggtcaaagaaattcattatcACAAATCGATATTCGACAGTTG
AATGGatgggTCTCCATGGCAACAGCTGGTTTGTTTTGTGCTTGGTCAGT
TGTACTTTTTGTGGAATCGTTAAATGCCAACCGTTTGTGGATGTTTATCT
CGCTACATCACAACCTTTTGAGAATGGAACACAGCGCGTACACATCTCAC
CTCATCCAGGTCGTCAAATCAATGAAGCTGatataaacaaagatttagGT
TTCAAAGATGACGAGGAGAAGTTTGAACACGTGACCAATGGAAAGACACG
TGACATTAAAGTTGGAATTCGTTTGTGGAAGAAACGGAGAGGACGATTGT
ATATACCGTACGAAATTAGTAAAAAATTTTCATGGTTCAGACGTCAAAAA
CTGAAGAGAGCGATCCGTAAAATGAACAGTTATTTACATTGTAACAAAGG
AAGGAATGTTTGgatcaaaagaaacaaaaagaaacataaacattttGTAA
AGTTTCAACCAGGACCTGGTTGTTCTGGGACAGTTGGCAAATCAAAATGG
CGCATTAATTACATCAAACTACACAACGCATGTATTGATTACAGTGATAG
CGGTATCGTTCTCCACGAGATGATGCACTCGATGGGATTCTATCATGAAA
TGCAACGTGGTGATCGTgataaatatatcaaaatacaccataaaaacata
caaaaagGAATGACGTTCAATTTTCATAAATTCAAGACCTATTTGACTAC
GTGTTATGATGTACCCTTTCGATGCATTTACAAAGAACGGTCGATTGACT
TACGAACCGAAGTTACCGCTCCTCGAGAGAGAGAAAGTCggtcaaagaaa
ttcattatcACAAATCGATATTCGACAGTTGAATGGatgggTCTCCATGG
CAACAGCTGGTTTGTTTTGTGCTTGGTCAGTTGTACTTTTTGTGGAATCG
TTAAATGCCAACCGTTTGTGGATGTTTATCTCGCTACATCACAACCTTTT
GAGAATGGAACACAGCGCGTACACATCTCACCTCATCCAGGTCGTCAAAT
CAATGAAGCTGatataaacaaagatttagGTTTCAAAGATGACGAGGAGA
AGTTTGAACACGTGACCAATGGAAAGACACGTGACATTAAAGTTGGAATT
CGTTTGTGGAAGAAACGGAGAGGACGATTGTATATACCGTACGAAATTAG
TAAAAAATTTTCATGGTTCAGACGTCAAAAACTGAAGAGAGCGATCCGTA
AAATGAACAGTTATTTACATTGTAACAAAGGAAGGAATGTTTGgatcaaa
agaaacaaaaagaaacataaacattttGTAAAGTTTCAACCAGGACCTGG
TTGTTCTGGGACAGTTGGCAAATCAAAATGGCGCATTAATTACATCAAAC
TACACAACGCATGTATTGATTACAGTGATAGCGGTATCGTTCTCCACGAG
ATGATGCACTCGATGGGATTCTATCATGAAATGCAACGTGGTGATCGTga
taaatatatcaaaatacaccataaaaacatacaaaaagGAATGACGTTCA
ATTTTCATAAATTCAAGACCTATTTGACTACGTGTTATGATGTACCCTTT
CGATGCATTTACAAAGAACGGTCGATTGACTTACGAACCGAAGTTACCGC
TCCTCGAGAGAGAGAAAGTCggtcaaagaaattcattatcACAAATCGAT
ATTCGACAGTTGAATGGatgggTCTCCATGGCAACAGCTGGTTTGTTTTG
TGCTTGGTCAGTTGTACTTTTTGTGGAATCGTTAAATGCCAACCGTTTGT
GGATGTTTATCTCGCTACATCACAACCTTTTGAGAATGGAACACAGCGCG
TACACATCTCACCTCATCCAGGTCGTCAAATCAATGAAGCTGatataaac
aaagatttagGTTTCAAAGATGACGAGGAGAAGTTTGAACACGTGACCAA
TGGAAAGACACGTGACATTAAAGTTGGAATTCGTTTGTGGAAGAAACGGA
GAGGACGATTGTATATACCGTACGAAATTAGTAAAAAATTTTCATGGTTC
AGACGTCAAAAACTGAAGAGAGCGATCCGTAAAATGAACAGTTATTTACA
TTGTAACAAAGGAAGGAATGTTTGgatcaaaagaaacaaaaagaaacata
aacattttGTAAAGTTTCAACCAGGACCTGGTTGTTCTGGGACAGTTGGC
AAATCAAAATGGCGCATTAATTACATCAAACTACACAACGCATGTATTGA
TTACAGTGATAGCGGTATCGTTCTCCACGAGATGATGCACTCGATGGGAT
TCTATCATGAAATGCAACGTGGTGATCGTgataaatatatcaaaatacac
cataaaaacatacaaaaagGAATGACGTTCAATTTTCATAAATTCAAGAC
CTATTTGACTACGTGTTATGATGTACCCTTTCGATGCATTTACAAAGAAC
GGTCGATTGACTTACGAACCGAAGTTACCGCTCCTCGAGAGAGAGAAAGT
CggtcaaagaaattcattatcACAAATCGATATTCGACAGTTGAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012707XLOC_012707Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022628-exon-sc0000429-1491911889:200791..200956TCONS_00022628-exon-sc0000429-1491911889:200791..200956Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:200791..200956TCONS_00022628-exon-sc0000429-1510915933:200791..200956Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:200791..200956TCONS_00022628-exon-sc0000429-1575043694:200791..200956Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:201424..201495TCONS_00022628-exon-sc0000429-1491911889:201424..201495Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:201424..201495TCONS_00022628-exon-sc0000429-1510915933:201424..201495Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:201424..201495TCONS_00022628-exon-sc0000429-1575043694:201424..201495Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:202427..202555TCONS_00022628-exon-sc0000429-1491911889:202427..202555Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:202427..202555TCONS_00022628-exon-sc0000429-1510915933:202427..202555Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:202427..202555TCONS_00022628-exon-sc0000429-1575043694:202427..202555Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:203330..203471TCONS_00022628-exon-sc0000429-1491911889:203330..203471Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:203330..203471TCONS_00022628-exon-sc0000429-1510915933:203330..203471Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:203330..203471TCONS_00022628-exon-sc0000429-1575043694:203330..203471Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:208642..208724TCONS_00022628-exon-sc0000429-1491911889:208642..208724Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:208642..208724TCONS_00022628-exon-sc0000429-1510915933:208642..208724Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:208642..208724TCONS_00022628-exon-sc0000429-1575043694:208642..208724Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:208968..209072TCONS_00022628-exon-sc0000429-1491911889:208968..209072Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:208968..209072TCONS_00022628-exon-sc0000429-1510915933:208968..209072Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:208968..209072TCONS_00022628-exon-sc0000429-1575043694:208968..209072Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:209445..209488TCONS_00022628-exon-sc0000429-1491911889:209445..209488Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:209445..209488TCONS_00022628-exon-sc0000429-1510915933:209445..209488Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:209445..209488TCONS_00022628-exon-sc0000429-1575043694:209445..209488Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1491911889:210029..210165TCONS_00022628-exon-sc0000429-1491911889:210029..210165Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1510915933:210029..210165TCONS_00022628-exon-sc0000429-1510915933:210029..210165Clytia hemisphaericaexon
TCONS_00022628-exon-sc0000429-1575043694:210029..210165TCONS_00022628-exon-sc0000429-1575043694:210029..210165Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022628-proteinTCONS_00022628-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000429supercontigsc0000429:200791..210165 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159093	0	0.0600444	0	0.214546	0.226049	3.47717	3.06379	1.60878	0.664243	3.16992	3.03738	3.24477	2.56392	3.40274	6.36617	1.23412	1.22412	0.0563731	0.176971	0.820374	1.27548	2.8578	3.26152	4.38415	5.84372	1.09074	0.465627	0.0588603	0.239877
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top