TCONS_00022583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022583
Unique NameTCONS_00022583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022583 ID=TCONS_00022583|Name=TCONS_00022583|organism=Clytia hemisphaerica|type=transcript|length=1980bp
TGAGGATATTTTTTACCATATGGCGGCTATGGGCGGCTTAATGATGAAGC
AAAATATATTGCCCTCAGATTCGGTTAATTTTATTCAAGATGGCGACCGT
TGCTGCTGCCGATGCATTGATTTCTAATGCTCCTGACAAGGcccaaacct
tatttttagaGATTATTTCCAAAGAAGTCGATGCTACAATCGAAGAAGAT
GTTAGAGAAAAGGAAAACGCCATTTTAAAGCTTGCATCTTTGTTTTCAAA
GCAAGGAAAAGTCAAGGAGATTGGTGAGCTGATCAAACAAACaagatcat
ttttgaaatgtatCTCTAAAGCCAAAGCAGCAAAACTCGTTCGTAGCTTA
CTAGATCTCTACATTGAATCGCATTCAAAAATCAACGATAACACTGCTGT
TGACTTGTGCCATGAGTGTATTGAATGGGCAAAGGAAGATAAAAGAACCT
TCCTTCGTCAAGCTCTCGAAGCAAGATTGGTTGCTTTGTATATTGATTCA
AAGTCTTACACAGAAGCCTTGAAACTTGGATCACGCTTAGTTAGAGAGTT
GAAAAAGCTAGATGACAAAGCTTTGCTTATGGAGGTGCAATTGTTTGAAA
GCAGAACATATCATGCATTAAACAACATCCCAAAATCAAGAGCTGCATTA
ACTTCTGCACGTACAACAGCAAGTGGTATCTACTGCCCTCCCAAGTTGCA
AGCTGCACTTGACTTACAATCTGGTATACTTCATGGGGAAGAGGGAGATT
TTAAAACTGCCTACTCATATTTTTATGAGGCTTTTGAAGGTTATGATTCA
ATCGTTAACCCTGCTGCTGTTGTTGCATTGAAATACATGCTGCTGTGCAA
AATCATGTTAAATTGCCCCGATGATGTTCAATCCATCATCAGTGGAAAGC
TGGCCCTTCGTTATGCTGGTCAACACATTGAGGCCATGAAGGCAATTGCC
ACAGCAAGCCATAATCGGTCGCTGCAAGAATTTCAGGATGCACTCAACAA
ATTCAAAGTTGAGCTTTCAGAAGATCCAATAATTCAACGTCATTTCAATA
AGCTGTATGATAACTTGTTGGAACAAAATCTTTGCAGAATTATCGAGCCA
TTTTCACGTGTTGAAGTTACACATATTGCCAAATTGATCAAGTTGCCTTT
AGAAACTGTTGAACGTAAATTATCACAAATGATTCTTGATCAAAAATTGC
TAGGAATCTTAGATCAAGGTGCTggaattttggtgatttttgatgaaaag
ccGACCAATAAAACCTATGAGAATACATTGGAAATTGTCAATAAAATGGG
GGGAGTTGTGGATGCATTGTACAACAAagtcaaaaaactttcataaataA
ACGCTTCatcacatttttcaaagttcaagagttgaatttcattttgaatc
gtttttttatcattttaggatcttttgtcaaattttgagTATTATTTAAC
AAACTTTGAAATCATATAACTGCCTCTATTCTTTTTCTGAACACCACTTC
TATGAGAAATTGCTATGTTTTTAAGGCTAGCTTGACTAGAATACAAATTA
GATTACCagaatccgcaaaattaagttcccgccaaaatttcttttttcct
atATCCGCCAAATTTGAGAgaacaaattacaaaaaagtctcactaagggt
aggaaatttttgaaaatcagagaaaaattttcgaaaaaatctctctaagg
gtcactttttcactaaaatttggtctctctaagggtcggttttcggaggt
cccgtccgcacatatccctcattcaccaaccctagtacccccctcccccg
ggctttagggaaatcttcattttcgatGATCTGCTCTTAAACCTTTCTCA
GTTTCTCTGTAAAAAAAGCTCTGTTTTATGGCAAACAGTCTTCTCGGTGA
ATCTAAGGGTGAGCACATCTGTTCAAAAAGATTCTCTTATTACACACtca
tgggatcatcccccccaggaagatgggggg
Run BLAST on NCBI

protein sequence of TCONS_00022583-protein

>TCONS_00022583-protein ID=TCONS_00022583-protein|Name=TCONS_00022583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MATVAAADALISNAPDKAQTLFLEIISKEVDATIEEDVREKENAILKLAS
LFSKQGKVKEIGELIKQTRSFLKCISKAKAAKLVRSLLDLYIESHSKIND
NTAVDLCHECIEWAKEDKRTFLRQALEARLVALYIDSKSYTEALKLGSRL
VRELKKLDDKALLMEVQLFESRTYHALNNIPKSRAALTSARTTASGIYCP
PKLQAALDLQSGILHGEEGDFKTAYSYFYEAFEGYDSIVNPAAVVALKYM
LLCKIMLNCPDDVQSIISGKLALRYAGQHIEAMKAIATASHNRSLQEFQD
ALNKFKVELSEDPIIQRHFNKLYDNLLEQNLCRIIEPFSRVEVTHIAKLI
KLPLETVERKLSQMILDQKLLGILDQGAGILVIFDEKPTNKTYENTLEIV
NKMGGVVDALYNKVKKLS
Run BLAST on NCBI

transcript from alignment at sc0000427:162615..164594

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022583 ID=TCONS_00022583|Name=TCONS_00022583|organism=Clytia hemisphaerica|type=transcript|length=1980bp|location=Sequence derived from alignment at sc0000427:162615..164594 (Clytia hemisphaerica)
ccccccatcttcctgggggggatgatcccatgaGTGTGTAATAAGAGAAT
CTTTTTGAACAGATGTGCTCACCCTTAGATTCACCGAGAAGACTGTTTGC
CATAAAACAGAGCTTTTTTTACAGAGAAACTGAGAAAGGTTTAAGAGCAG
ATCatcgaaaatgaagatttccctaaagcccgggggaggggggtactagg
gttggtgaatgagggatatgtgcggacgggacctccgaaaaccgaccctt
agagagaccaaattttagtgaaaaagtgacccttagagagattttttcga
aaatttttctctgattttcaaaaatttcctacccttagtgagactttttt
gtaatttgttcTCTCAAATTTGGCGGATataggaaaaaagaaattttggc
gggaacttaattttgcggattctGGTAATCTAATTTGTATTCTAGTCAAG
CTAGCCTTAAAAACATAGCAATTTCTCATAGAAGTGGTGTTCAGAAAAAG
AATAGAGGCAGTTATATGATTTCAAAGTTTGTTAAATAATActcaaaatt
tgacaaaagatcctaaaatgataaaaaaacgattcaaaatgaaattcaac
tcttgaactttgaaaaatgtgatGAAGCGTTtatttatgaaagttttttg
actTTGTTGTACAATGCATCCACAACTCCCCCCATTTTATTGACAATTTC
CAATGTATTCTCATAGGTTTTATTGGTCggcttttcatcaaaaatcacca
aaattccAGCACCTTGATCTAAGATTCCTAGCAATTTTTGATCAAGAATC
ATTTGTGATAATTTACGTTCAACAGTTTCTAAAGGCAACTTGATCAATTT
GGCAATATGTGTAACTTCAACACGTGAAAATGGCTCGATAATTCTGCAAA
GATTTTGTTCCAACAAGTTATCATACAGCTTATTGAAATGACGTTGAATT
ATTGGATCTTCTGAAAGCTCAACTTTGAATTTGTTGAGTGCATCCTGAAA
TTCTTGCAGCGACCGATTATGGCTTGCTGTGGCAATTGCCTTCATGGCCT
CAATGTGTTGACCAGCATAACGAAGGGCCAGCTTTCCACTGATGATGGAT
TGAACATCATCGGGGCAATTTAACATGATTTTGCACAGCAGCATGTATTT
CAATGCAACAACAGCAGCAGGGTTAACGATTGAATCATAACCTTCAAAAG
CCTCATAAAAATATGAGTAGGCAGTTTTAAAATCTCCCTCTTCCCCATGA
AGTATACCAGATTGTAAGTCAAGTGCAGCTTGCAACTTGGGAGGGCAGTA
GATACCACTTGCTGTTGTACGTGCAGAAGTTAATGCAGCTCTTGATTTTG
GGATGTTGTTTAATGCATGATATGTTCTGCTTTCAAACAATTGCACCTCC
ATAAGCAAAGCTTTGTCATCTAGCTTTTTCAACTCTCTAACTAAGCGTGA
TCCAAGTTTCAAGGCTTCTGTGTAAGACTTTGAATCAATATACAAAGCAA
CCAATCTTGCTTCGAGAGCTTGACGAAGGAAGGTTCTTTTATCTTCCTTT
GCCCATTCAATACACTCATGGCACAAGTCAACAGCAGTGTTATCGTTGAT
TTTTGAATGCGATTCAATGTAGAGATCTAGTAAGCTACGAACGAGTTTTG
CTGCTTTGGCTTTAGAGatacatttcaaaaatgatcttGTTTGTTTGATC
AGCTCACCAATCTCCTTGACTTTTCCTTGCTTTGAAAACAAAGATGCAAG
CTTTAAAATGGCGTTTTCCTTTTCTCTAACATCTTCTTCGATTGTAGCAT
CGACTTCTTTGGAAATAATCtctaaaaataaggtttgggCCTTGTCAGGA
GCATTAGAAATCAATGCATCGGCAGCAGCAACGGTCGCCATCTTGAATAA
AATTAACCGAATCTGAGGGCAATATATTTTGCTTCATCATTAAGCCGCCC
ATAGCCGCCATATGGTAAAAAATATCCTCA

Coding sequence (CDS) from alignment at sc0000427:162615..164594

>TCONS_00022583 ID=TCONS_00022583|Name=TCONS_00022583|organism=Clytia hemisphaerica|type=CDS|length=1257bp|location=Sequence derived from alignment at sc0000427:162615..164594 (Clytia hemisphaerica)
ttatgaaagttttttgactTTGTTGTACAATGCATCCACAACTCCCCCCA
TTTTATTGACAATTTCCAATGTATTCTCATAGGTTTTATTGGTCggcttt
tcatcaaaaatcaccaaaattccAGCACCTTGATCTAAGATTCCTAGCAA
TTTTTGATCAAGAATCATTTGTGATAATTTACGTTCAACAGTTTCTAAAG
GCAACTTGATCAATTTGGCAATATGTGTAACTTCAACACGTGAAAATGGC
TCGATAATTCTGCAAAGATTTTGTTCCAACAAGTTATCATACAGCTTATT
GAAATGACGTTGAATTATTGGATCTTCTGAAAGCTCAACTTTGAATTTGT
TGAGTGCATCCTGAAATTCTTGCAGCGACCGATTATGGCTTGCTGTGGCA
ATTGCCTTCATGGCCTCAATGTGTTGACCAGCATAACGAAGGGCCAGCTT
TCCACTGATGATGGATTGAACATCATCGGGGCAATTTAACATGATTTTGC
ACAGCAGCATGTATTTCAATGCAACAACAGCAGCAGGGTTAACGATTGAA
TCATAACCTTCAAAAGCCTCATAAAAATATGAGTAGGCAGTTTTAAAATC
TCCCTCTTCCCCATGAAGTATACCAGATTGTAAGTCAAGTGCAGCTTGCA
ACTTGGGAGGGCAGTAGATACCACTTGCTGTTGTACGTGCAGAAGTTAAT
GCAGCTCTTGATTTTGGGATGTTGTTTAATGCATGATATGTTCTGCTTTC
AAACAATTGCACCTCCATAAGCAAAGCTTTGTCATCTAGCTTTTTCAACT
CTCTAACTAAGCGTGATCCAAGTTTCAAGGCTTCTGTGTAAGACTTTGAA
TCAATATACAAAGCAACCAATCTTGCTTCGAGAGCTTGACGAAGGAAGGT
TCTTTTATCTTCCTTTGCCCATTCAATACACTCATGGCACAAGTCAACAG
CAGTGTTATCGTTGATTTTTGAATGCGATTCAATGTAGAGATCTAGTAAG
CTACGAACGAGTTTTGCTGCTTTGGCTTTAGAGatacatttcaaaaatga
tcttGTTTGTTTGATCAGCTCACCAATCTCCTTGACTTTTCCTTGCTTTG
AAAACAAAGATGCAAGCTTTAAAATGGCGTTTTCCTTTTCTCTAACATCT
TCTTCGATTGTAGCATCGACTTCTTTGGAAATAATCtctaaaaataaggt
ttgggCCTTGTCAGGAGCATTAGAAATCAATGCATCGGCAGCAGCAACGG
TCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012669XLOC_012669Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022583-proteinTCONS_00022583-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022583-exon-sc0000427-1491911889:162615..164594TCONS_00022583-exon-sc0000427-1491911889:162615..164594Clytia hemisphaericaexon
TCONS_00022583-exon-sc0000427-1510915933:162615..164594TCONS_00022583-exon-sc0000427-1510915933:162615..164594Clytia hemisphaericaexon
TCONS_00022583-exon-sc0000427-1575043694:162615..164594TCONS_00022583-exon-sc0000427-1575043694:162615..164594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:162615..164594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
221.542	236.926	235.908	230.764	162.967	122.573	137.482	148.307	129.965	117.327	98.7117	90.5161	68.2085	64.9074	91.0716	94.2975	108.528	107.642	37.4088	51.2127	93.1895	86.9812	117.58	111.683	122.278	113.67	111.824	94.8492	80.6524	77.7476
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00022583 vs. Swiss-Prot (Human)
Match: PSD11 (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 511.916 bits (1317), Expect = 5.922e-176
Identity = 261/413 (63.20%), Postives = 324/413 (78.45%), Query Frame = 3 
Query:  108 ADALISNAPDKAQTLFLEIISKEVDATIEEDVREKENAILKLASLFSKQGKVKEIGELIKQTRSFLKCISKAKAAKLVRSLLDLYIESHSKINDNTAVDLCHECIEWAKEDKRTFLRQALEARLVALYIDSKSYTEALKLGSRLVRELKKLDDKALLMEVQLFESRTYHALNNIPKXXXXXXXXXXXXXGIYCPPKLQAALDLQSGILHG-EEGDFKTAYSYFYEAFEGYDSIVNPAAVVALKYMLLCKIMLNCPDDVQSIISGKLALRYAGQHIEAMKAIATASHNRSLQEFQDALNKFKVELSEDPIIQRHFNKLYDNLLEQNLCRIIEPFSRVEVTHIAKLIKLPLETVERKLSQMILDQKLLGILDQGAGILVIFDEKPTNKTYENTLEIVNKMGGVVDALYNKVKKLS 1343
            A +L+S   + +  +   I+ +++    EE V+ KE +IL+L SL +K G+  E+G L+K  R FL  ISKAKAA+LVRSLLDL+++  +       V+LC ECIEWAK +KRTFLRQALEARLV+LY D+K Y EAL LGS+L+RELKK+DDKALL+EVQL ES+TYHAL+N+PK+RAALTSARTTA+ IYCPPKLQA LD+QSGI+H  EE D+KTAYSYFYEAFEGYDSI +P A+ +LKYMLLCKIMLN P+DVQ+++SGKLALRYAG+  EA+K +A AS NRSL +F+ AL  ++ EL +DPII  H  KLYDNLLEQNL R+IEPFSRV++ HI+ LIKL    VERKLSQMILD+K  GILDQG G+L+IFDE P +KTYE  LE +  M  VVD+LYNK KKL+
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQE--VELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
The following BLAST results are available for this feature:
BLAST of TCONS_00022583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSD115.922e-17663.2026S proteasome non-ATPase regulatory subunit 11 OS... [more]
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