TCONS_00022583-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022583-protein
Unique NameTCONS_00022583-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022583-protein ID=TCONS_00022583-protein|Name=TCONS_00022583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MATVAAADALISNAPDKAQTLFLEIISKEVDATIEEDVREKENAILKLAS
LFSKQGKVKEIGELIKQTRSFLKCISKAKAAKLVRSLLDLYIESHSKIND
NTAVDLCHECIEWAKEDKRTFLRQALEARLVALYIDSKSYTEALKLGSRL
VRELKKLDDKALLMEVQLFESRTYHALNNIPKSRAALTSARTTASGIYCP
PKLQAALDLQSGILHGEEGDFKTAYSYFYEAFEGYDSIVNPAAVVALKYM
LLCKIMLNCPDDVQSIISGKLALRYAGQHIEAMKAIATASHNRSLQEFQD
ALNKFKVELSEDPIIQRHFNKLYDNLLEQNLCRIIEPFSRVEVTHIAKLI
KLPLETVERKLSQMILDQKLLGILDQGAGILVIFDEKPTNKTYENTLEIV
NKMGGVVDALYNKVKKLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012669XLOC_012669Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022583TCONS_00022583Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 317..400
e-value: 2.7E-20
score: 83.4
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 282..383
e-value: 7.6E-18
score: 64.9
NoneNo IPR availableSMARTSM00753PINTcoord: 317..400
e-value: 2.7E-20
score: 83.4
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 322..394
e-value: 5.2E-17
score: 61.2
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 311..393
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 4..321
e-value: 1.7E-9
score: 36.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 101..326

Blast
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BLAST of TCONS_00022583-protein vs. Swiss-Prot (Human)
Match: PSD11 (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 261/413 (63.20%), Postives = 324/413 (78.45%), Query Frame = 0 
Query:    7 ADALISNAPDKAQTLFLEIISKEVDATIEEDVREKENAILKLASLFSKQGKVKEIGELIKQTRSFLKCISKAKAAKLVRSLLDLYIESHSKINDNTAVDLCHECIEWAKEDKRTFLRQALEARLVALYIDSKSYTEALKLGSRLVRELKKLDDKALLMEVQLFESRTYHALNNIPKSRAALTSARTTASGIYCPPKLQAALDLQSGILHG-EEGDFKTAYSYFYEAFEGYDSIVNPAAVVALKYMLLCKIMLNCPDDVQSIISGKLALRYAGQHIEAMKAIATASHNRSLQEFQDALNKFKVELSEDPIIQRHFNKLYDNLLEQNLCRIIEPFSRVEVTHIAKLIKLPLETVERKLSQMILDQKLLGILDQGAGILVIFDEKPTNKTYENTLEIVNKMGGVVDALYNKVKKLS 418
            A +L+S   + +  +   I+ +++    EE V+ KE +IL+L SL +K G+  E+G L+K  R FL  ISKAKAA+LVRSLLDL+++  +       V+LC ECIEWAK +KRTFLRQALEARLV+LY D+K Y EAL LGS+L+RELKK+DDKALL+EVQL ES+TYHAL+N+PK+RAALTSARTTA+ IYCPPKLQA LD+QSGI+H  EE D+KTAYSYFYEAFEGYDSI +P A+ +LKYMLLCKIMLN P+DVQ+++SGKLALRYAG+  EA+K +A AS NRSL +F+ AL  ++ EL +DPII  H  KLYDNLLEQNL R+IEPFSRV++ HI+ LIKL    VERKLSQMILD+K  GILDQG G+L+IFDE P +KTYE  LE +  M  VVD+LYNK KKL+
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQE--VELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
The following BLAST results are available for this feature:
BLAST of TCONS_00022583-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSD110.000e+063.2026S proteasome non-ATPase regulatory subunit 11 OS... [more]
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