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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022565 ID=TCONS_00022565|Name=TCONS_00022565|organism=Clytia hemisphaerica|type=transcript|length=1615bp
CCTGAATTTACATATCCTAGccttaaatttgttaaaaatatcaaattatt
tttcttaagtTTCTTAGGGCGGAGATACAATAGCTTGCTTCGACCTATTC
TGCAAATTACTATATAAACCCAGTTGAAAAGTGAAAGTCATACACTCATC
AGCCTTTTTCATAGCACAGGACGGCAAGATGTCTCACCGTAAATTCCGTG
CTCCCCGCCATGGTTCACTTGGGTTTTTGCCACGCAAAAGATCAAAGCGT
CAAAATGGTAAGATCAAATGCTTCCCCAAGGATGACCAAACACAACCCTG
CCATTTGACTGGATTTGTTGGTTTCAAAGCTGGTATGACACACATTGTAA
GAGAGGTAGACAGAGCTGGCtcaaaaactcacaaaaagGAAGTTGTCGAG
GCTGTTACTATTTTGGAAACTCCTCCAATTGTTATTGTTGGAATTGTCGG
TTATGTTGAAACTCCACGAGGAATGAGACAGCTCACTACTGTTTGGGCTG
AACATCTTAGTGAAGAATGCAGACGTCGATTCTACAAAAACTGGTACACA
TCAAAGAGGAAGGCCTTCACTAAATCTAGTAAGAAGTGGTCTGATGAAAA
TGGAAAGAAAAGCATTGAACGTGACCTTGAAAAGATGAAGAAATACTGCA
AAGTTATCAGAGTCTTAGTCCACACTCAACAAAAACTGATccgcttgaaa
caaaagaaagccCACATCATGGAAATTCAAGTCAATGGTGGTGACATTGC
TGCTAAAGTTGATTGGGCTAAAGAACATTTAGAAAAGACTGTTTCAGTTG
CATCAGTATTTGGTCAAGATGAGATGTTAGACTGCATTGGAATCACCAAA
GGTCATGGATTCAAAGGTGTCACCTACAGATGGGGTACCAAGAAATTACC
AAGAAAAACACACAAAGGTCTTCGCAAAGTTGCCTGTATTGGTGCTTGGC
ATCCTGCCCGTGTTGCATACTCTGTTCCACGTGCTGGTCAATGTGGTTAC
CATCATCGTGTTGAACGAAACAAGAAAGTTTACAGAGTTGGACGTGGAGT
TCACACCAAGGACAACAAAGTTGTTAAGAACAATGCTGCCACAGAATATG
ATCTCACTGAAAAGACAATTACCCCAATGGGTGGTTTCCCACATTACGGT
GAAGTCAATGAAGACTTTTTGATGATCAAGGGATGTGTCATGGGACCAAA
GAAGAGAGTTATCACTTTAAGAAAGacaCTTCTCCCACAAACCTCGAGAA
AGGCTTTAGAAAAGATATCACTCAAATTCATCGACACCTCATCCAAATTT
GGTCATGGTCGCTTCCAACATGATCAAGAGAAGAAGAACTTCATGGGTCT
TCTCAAGAAAGACAAACAAAATGCTGTTGAAGCTTAAATTTGTGCAATAA
TAAATCCCagtcaaatgaaaatatcaacaCTGTTATTTCTTTCAATCCAC
AAATTCTTTGGTCTTGAAAATCAGATTTTAGTATTTGGGGGATTTCCCTT
TCgttatttttagggaaaatgagcactTCTCTTGATTGGCTTTCCATTTT
TTAATGATTAATGCCTACCTTAGCCCGGGGTCttcttaaagcttttttca
tatagactggatggc Run BLAST on NCBI protein sequence of TCONS_00022565-protein >TCONS_00022565-protein ID=TCONS_00022565-protein|Name=TCONS_00022565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MSHRKFRAPRHGSLGFLPRKRSKRQNGKIKCFPKDDQTQPCHLTGFVGFK
AGMTHIVREVDRAGSKTHKKEVVEAVTILETPPIVIVGIVGYVETPRGMR
QLTTVWAEHLSEECRRRFYKNWYTSKRKAFTKSSKKWSDENGKKSIERDL
EKMKKYCKVIRVLVHTQQKLIRLKQKKAHIMEIQVNGGDIAAKVDWAKEH
LEKTVSVASVFGQDEMLDCIGITKGHGFKGVTYRWGTKKLPRKTHKGLRK
VACIGAWHPARVAYSVPRAGQCGYHHRVERNKKVYRVGRGVHTKDNKVVK
NNAATEYDLTEKTITPMGGFPHYGEVNEDFLMIKGCVMGPKKRVITLRKT
LLPQTSRKALEKISLKFIDTSSKFGHGRFQHDQEKKNFMGLLKKDKQNAV
EA Run BLAST on NCBI transcript from alignment at sc0000427:164671..168554+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022565 ID=TCONS_00022565|Name=TCONS_00022565|organism=Clytia hemisphaerica|type=transcript|length=3884bp|location=Sequence derived from alignment at sc0000427:164671..168554+ (Clytia hemisphaerica)
CCTGAATTTACATATCCTAGccttaaatttgttaaaaatatcaaattatt
tttcttaagtTTCTTAGGGCGGAGATACAATAGCTTGCTTCGACCTATTC
TGCAAATTACTATATAAACCCAGTTGAAAAGTGAAAGTCATACACTCATC
AGCCTTTTTCATAGCACAGGACGGCAAGATGGTAAGTTGAATTCTGAGCT
CTGACAGCTCAACCTTTGCTAATCTTCCACAATCCTATATCTTTTCCACT
TATTCTTCATTGCTTTGATCTTGAAGGGTACCCAACAACATGGACTACAA
TATtttctgtttattttatttctagTCTCACCGTAAATTCCGTGCTCCCC
GCCATGGTTCACTTGGGTTTTTGCCACGCAAAAGATCAAAGCGTCAAAAT
GGTAAGATCAAATGCTTCCCCAAGGATGACCAAACACAACCCTGCCATTT
GACTGGATTTGTTGGTTTCAAAGCTGGTATGACACACATTGTAAGAGAGG
TAGACAGAGCTGGCtcaaaaactcacaaaaagGAAGTTGTCGAGGCTGTT
ACTATTTTGGAAACTCCTCCAATTGTTATTGTTGGAATTGTCGGTTATGT
TGAAACTCCACGAGGAATGAGACAGCTCACTACTGTTTGGGCTGAACATC
TTAGTGAAGAATGCAGACGTCGATTCTACAAAAACTGGTAAGAAAAGTTC
TCAAGTTTGTTTCAAAggaaggtctttttttaattacatttgaaaattct
attTAGGCCCTTTGTGAATGTGtactaaattgcaaaatttctcAGCATCG
AAACTCCGCTCAGAGTTATCTGATGAGTTCCGGTCTTTTGTTGTTAGGTA
CACATCAAAGAGGAAGGCCTTCACTAAATCTAGTAAGAAGTGGTCTGATG
AAAATGGAAAGAAAAGCATTGAACGTGACCTTGAAAAGATGAAGAAATAC
TGCAAAGTTATCAGAGTCTTAGTCCACACTCAACAAAAACTGATccgctt
gaaacaaaagaaagccCACATCATGGAAATTCAAGTCAATGGTGGTGACA
TTGCTGCTAAAGTTGATTGGGCTAAAGAACATTTAGAAAAGACTGTTTCA
GTTGCATCAGTATTTGGTCAAGATGAGATGTTAGACTGCATTGGAATCAC
CAAAGGTCATGGATTCAAAGGTATGATATGAGCATTCCCCATTGGGGAGG
TTAATGAGAGATAATATTGCTGATCAATTAATTGCAATgcactttttaac
attttgggaTTGCATGAGAAGTAAAGCAAAAACTTCCCTGGAGGCTAAAG
CAGTTGCAGTTAGGTTTGAGTCATCTGTACACTTTTTCCAACGCATCAAT
CCCAATTGATATTTTCCATTCAGTGTTTGTGATTTTAAGATAGGTAGTCT
CAATAACTGCTTGTAATTCATGAAAATTGAAGCTTATTCTCAATAATTGT
TTTCCAGGTGTCACCTACAGATGGGGTACCAAGAAATTACCAAGAAAAAC
ACACAAAGGTCTTCGCAAAGTTGCCTGTATTGGTGCTTGGCATCCTGCCC
GTGTTGCATACTCTGTTCCACGTGCTGGTCAATGTGGTTACCATCATCGT
GTTGAACGAAACAAGAAAGTTTACAGAGTTGGACGTGGAGTTCACACCAA
GGACAACAAAGTTGTTAAGAACAATGCTGCCACAGAATATGATCTCACTG
AAAAGACAATTACCCCAATGGTAAGTAATTAACCTTGATTTTTGTCCTGG
TTAAGAACAGAAGAGATTTCTAAACCTaagaatttgatatttttccatCC
GAGGTAGTTTAAATTGGTCCATTGTTAACGATGAATTGTGGTTATTTCGT
ATCCAATAAATTAcaattattttctaaatttaataGTCACAATATGTGTT
ATGTATTTCCTgaatacaccttatcggaaatttcACCTACTCGCATTGTT
GCTATGCAACACTTTTTGGGAGGTGAACAAAGCTCGATAttgcggttttc
aggcaaaaagcaAAACACCCAAAATTTTGATGTCAAAAGAGCCTCCTCAA
CTGAAGAACCACcaaagttgttgtttttctctttctaatagcttctgcta
gcatctggaaagctttgttttgcttgttttcttttttcaaattcagtgta
tttttaggaacataAACAAGACAGATATACGCAAATGAGTTCTTGTTTTA
CGCGGGAAATTTTATACAGGTCTAGAATTCATTTAGTATATTTACGTGAC
AGAAATGTAGTGTTGAAGCTGGGCCGTACCACGCGAACGTACTCCATGGA
TTGCTAGCCATTCCATCGCTACTCGCGCTaccatttatgtttacctccca
atttcaacggatccattttagcgcaattgtttttgtggaatttccgataa
ggtgtattcTCAATTGGCAAAGTagaaatgatgattttgaatTTATCCTT
CTAGGGTGGTTTCCCACATTACGGTGAAGTCAATGAAGACTTTTTGATGA
TCAAGGGATGTGTCATGGGACCAAAGAAGAGAGTTATCACTTTAAGAAAG
GTACTTTCTATCTATTTTCCTAAATGTTAATGATATCAGTTTTTACTTCA
ACACTTAAACcatatttttatcagggggtgttttccaccagactggcact
cttttgctaatagctcactgaaaattaacactctgaaagttttttacttt
taatataatcctattagcagcatgtataccaaattttacaattatacgcc
gaccagatcaggttttataaCTTATTTGTggaggcatatcataaaatcca
gctaaaaccctgtaaaatcccaaaatcttaaatataGCAAGCATATCTTt
cgatctaggcatccaactgacttcaaattttgacaggttttaggaaTCAA
TGataagttttaaaaaatatttaaaaaaatttcttgttttttgaaaaaat
ttactcattttctgcatggattttaaaccccgattttattagtatgttaa
aaaccagcaaatatgttaaagatatttttttggcttttagaaatttaaaa
cagacatgaaaaatctccattcgttcaaccttaattgctattttaatagt
actttgtgatgacgtcaccacctttatgatgacgtcatcaacccaaactt
ttatgaactccttttatggtagagaacatttgtgctaaatttcaagttca
taccgtttctagatcaaaagttatgcaaggctggtggaaaacaacccccc
cccccttgagaatacaaaatccgaaaaagcctgataataatagggttaac
aCATTTTCCAACTGACCATTGTTGACCATTGGTTTTCGGATCATGTGGCT
AGTAGTTGTAACACCTATAGATGGAtagatttttatcattttaaaaaatt
ttgccatGAGCATGGCTGATATTTCAAACCGTGGATgtcattttattttt
gtaatgCTATTCCTTTCCACttataattgaaattttttttctagacaCTT
CTCCCACAAACCTCGAGAAAGGCTTTAGAAAAGATATCACTCAAATTCAT
CGACACCTCATCCAAATTTGGTCATGGTCGCTTCCAACATGATCAAGAGA
AGAAGAACTTCATGGGTCTTCTCAAGAAAGACAAACAAAATGCTGTTGAA
GCTTAAATTTGTGCAATAATAAATCCCagtcaaatgaaaatatcaacaCT
GTTATTTCTTTCAATCCACAAATTCTTTGGTCTTGAAAATCAGATTTTAG
TATTTGGGGGATTTCCCTTTCgttatttttagggaaaatgagcactTCTC
TTGATTGGCTTTCCATTTTTTAATGATTAATGCCTACCTTAGCCCGGGGT
Cttcttaaagcttttttcatatagactggatggc Coding sequence (CDS) from alignment at sc0000427:164671..168554+ >TCONS_00022565 ID=TCONS_00022565|Name=TCONS_00022565|organism=Clytia hemisphaerica|type=CDS|length=7254bp|location=Sequence derived from alignment at sc0000427:164671..168554+ (Clytia hemisphaerica)
ATGTCTCACCGTAAATTCCGTGCTCCCCGCCATGGTTCACTTGGGTTTTT
GCCACGCAAAAGATCAAAGCGTCAAAATGGTAAGATCAAATGCTTCCCCA
AGGATGACCAAACACAACCCTGCCATTTGACTGGATTTGTTGGTTTCAAA
GCTGGTATGACACACATTGTAAGAGAGGTAGACAGAGCTGGCtcaaaaac
tcacaaaaagGAAGTTGTCGAGGCTGTTACTATTTTGGAAACTCCTCCAA
TTGTTATTGTTGGAATTGTCGGTTATGTTGAAACTCCACGAGGAATGAGA
CAGCTCACTACTGTTTGGGCTGAACATCTTAGTGAAGAATGCAGACGTCG
ATTCTACAAAAACTGGTACACATCAAAGAGGAAGGCCTTCACTAAATCTA
GTAAGAAGTGGTCTGATGAAAATGGAAAGAAAAGCATTGAACGTGACCTT
GAAAAGATGAAGAAATACTGCAAAGTTATCAGAGTCTTAGTCCACACTCA
ACAAAAACTGATccgcttgaaacaaaagaaagccCACATCATGGAAATTC
AAGTCAATGGTGGTGACATTGCTGCTAAAGTTGATTGGGCTAAAGAACAT
TTAGAAAAGACTGTTTCAGTTGCATCAGTATTTGGTCAAGATGAGATGTT
AGACTGCATTGGAATCACCAAAGGTCATGGATTCAAAGGTGTCACCTACA
GATGGGGTACCAAGAAATTACCAAGAAAAACACACAAAGGTCTTCGCAAA
GTTGCCTGTATTGGTGCTTGGCATCCTGCCCGTGTTGCATACTCTGTTCC
ACGTGCTGGTCAATGTGGTTACCATCATCGTGTTGAACGAAACAAGAAAG
TTTACAGAGTTGGACGTGGAGTTCACACCAAGGACAACAAAGTTGTTAAG
AACAATGCTGCCACAGAATATGATCTCACTGAAAAGACAATTACCCCAAT
GGGTGGTTTCCCACATTACGGTGAAGTCAATGAAGACTTTTTGATGATCA
AGGGATGTGTCATGGGACCAAAGAAGAGAGTTATCACTTTAAGAAAGaca
CTTCTCCCACAAACCTCGAGAAAGGCTTTAGAAAAGATATCACTCAAATT
CATCGACACCTCATCCAAATTTGGTCATGGTCGCTTCCAACATGATCAAG
AGAAGAAGAACTTCATGGGTCTTCTCAAGAAAGACAAACAAAATGCTGTT
GAAGCTTAAATGTCTCACCGTAAATTCCGTGCTCCCCGCCATGGTTCACT
TGGGTTTTTGCCACGCAAAAGATCAAAGCGTCAAAATGGTAAGATCAAAT
GCTTCCCCAAGGATGACCAAACACAACCCTGCCATTTGACTGGATTTGTT
GGTTTCAAAGCTGGTATGACACACATTGTAAGAGAGGTAGACAGAGCTGG
CtcaaaaactcacaaaaagGAAGTTGTCGAGGCTGTTACTATTTTGGAAA
CTCCTCCAATTGTTATTGTTGGAATTGTCGGTTATGTTGAAACTCCACGA
GGAATGAGACAGCTCACTACTGTTTGGGCTGAACATCTTAGTGAAGAATG
CAGACGTCGATTCTACAAAAACTGGTACACATCAAAGAGGAAGGCCTTCA
CTAAATCTAGTAAGAAGTGGTCTGATGAAAATGGAAAGAAAAGCATTGAA
CGTGACCTTGAAAAGATGAAGAAATACTGCAAAGTTATCAGAGTCTTAGT
CCACACTCAACAAAAACTGATccgcttgaaacaaaagaaagccCACATCA
TGGAAATTCAAGTCAATGGTGGTGACATTGCTGCTAAAGTTGATTGGGCT
AAAGAACATTTAGAAAAGACTGTTTCAGTTGCATCAGTATTTGGTCAAGA
TGAGATGTTAGACTGCATTGGAATCACCAAAGGTCATGGATTCAAAGGTG
TCACCTACAGATGGGGTACCAAGAAATTACCAAGAAAAACACACAAAGGT
CTTCGCAAAGTTGCCTGTATTGGTGCTTGGCATCCTGCCCGTGTTGCATA
CTCTGTTCCACGTGCTGGTCAATGTGGTTACCATCATCGTGTTGAACGAA
ACAAGAAAGTTTACAGAGTTGGACGTGGAGTTCACACCAAGGACAACAAA
GTTGTTAAGAACAATGCTGCCACAGAATATGATCTCACTGAAAAGACAAT
TACCCCAATGGGTGGTTTCCCACATTACGGTGAAGTCAATGAAGACTTTT
TGATGATCAAGGGATGTGTCATGGGACCAAAGAAGAGAGTTATCACTTTA
AGAAAGacaCTTCTCCCACAAACCTCGAGAAAGGCTTTAGAAAAGATATC
ACTCAAATTCATCGACACCTCATCCAAATTTGGTCATGGTCGCTTCCAAC
ATGATCAAGAGAAGAAGAACTTCATGGGTCTTCTCAAGAAAGACAAACAA
AATGCTGTTGAAGCTTAAATGTCTCACCGTAAATTCCGTGCTCCCCGCCA
TGGTTCACTTGGGTTTTTGCCACGCAAAAGATCAAAGCGTCAAAATGGTA
AGATCAAATGCTTCCCCAAGGATGACCAAACACAACCCTGCCATTTGACT
GGATTTGTTGGTTTCAAAGCTGGTATGACACACATTGTAAGAGAGGTAGA
CAGAGCTGGCtcaaaaactcacaaaaagGAAGTTGTCGAGGCTGTTACTA
TTTTGGAAACTCCTCCAATTGTTATTGTTGGAATTGTCGGTTATGTTGAA
ACTCCACGAGGAATGAGACAGCTCACTACTGTTTGGGCTGAACATCTTAG
TGAAGAATGCAGACGTCGATTCTACAAAAACTGGTACACATCAAAGAGGA
AGGCCTTCACTAAATCTAGTAAGAAGTGGTCTGATGAAAATGGAAAGAAA
AGCATTGAACGTGACCTTGAAAAGATGAAGAAATACTGCAAAGTTATCAG
AGTCTTAGTCCACACTCAACAAAAACTGATccgcttgaaacaaaagaaag
ccCACATCATGGAAATTCAAGTCAATGGTGGTGACATTGCTGCTAAAGTT
GATTGGGCTAAAGAACATTTAGAAAAGACTGTTTCAGTTGCATCAGTATT
TGGTCAAGATGAGATGTTAGACTGCATTGGAATCACCAAAGGTCATGGAT
TCAAAGGTGTCACCTACAGATGGGGTACCAAGAAATTACCAAGAAAAACA
CACAAAGGTCTTCGCAAAGTTGCCTGTATTGGTGCTTGGCATCCTGCCCG
TGTTGCATACTCTGTTCCACGTGCTGGTCAATGTGGTTACCATCATCGTG
TTGAACGAAACAAGAAAGTTTACAGAGTTGGACGTGGAGTTCACACCAAG
GACAACAAAGTTGTTAAGAACAATGCTGCCACAGAATATGATCTCACTGA
AAAGACAATTACCCCAATGGGTGGTTTCCCACATTACGGTGAAGTCAATG
AAGACTTTTTGATGATCAAGGGATGTGTCATGGGACCAAAGAAGAGAGTT
ATCACTTTAAGAAAGacaCTTCTCCCACAAACCTCGAGAAAGGCTTTAGA
AAAGATATCACTCAAATTCATCGACACCTCATCCAAATTTGGTCATGGTC
GCTTCCAACATGATCAAGAGAAGAAGAACTTCATGGGTCTTCTCAAGAAA
GACAAACAAAATGCTGTTGAAGCTTAAATGTCTCACCGTAAATTCCGTGC
TCCCCGCCATGGTTCACTTGGGTTTTTGCCACGCAAAAGATCAAAGCGTC
AAAATGGTAAGATCAAATGCTTCCCCAAGGATGACCAAACACAACCCTGC
CATTTGACTGGATTTGTTGGTTTCAAAGCTGGTATGACACACATTGTAAG
AGAGGTAGACAGAGCTGGCtcaaaaactcacaaaaagGAAGTTGTCGAGG
CTGTTACTATTTTGGAAACTCCTCCAATTGTTATTGTTGGAATTGTCGGT
TATGTTGAAACTCCACGAGGAATGAGACAGCTCACTACTGTTTGGGCTGA
ACATCTTAGTGAAGAATGCAGACGTCGATTCTACAAAAACTGGTACACAT
CAAAGAGGAAGGCCTTCACTAAATCTAGTAAGAAGTGGTCTGATGAAAAT
GGAAAGAAAAGCATTGAACGTGACCTTGAAAAGATGAAGAAATACTGCAA
AGTTATCAGAGTCTTAGTCCACACTCAACAAAAACTGATccgcttgaaac
aaaagaaagccCACATCATGGAAATTCAAGTCAATGGTGGTGACATTGCT
GCTAAAGTTGATTGGGCTAAAGAACATTTAGAAAAGACTGTTTCAGTTGC
ATCAGTATTTGGTCAAGATGAGATGTTAGACTGCATTGGAATCACCAAAG
GTCATGGATTCAAAGGTGTCACCTACAGATGGGGTACCAAGAAATTACCA
AGAAAAACACACAAAGGTCTTCGCAAAGTTGCCTGTATTGGTGCTTGGCA
TCCTGCCCGTGTTGCATACTCTGTTCCACGTGCTGGTCAATGTGGTTACC
ATCATCGTGTTGAACGAAACAAGAAAGTTTACAGAGTTGGACGTGGAGTT
CACACCAAGGACAACAAAGTTGTTAAGAACAATGCTGCCACAGAATATGA
TCTCACTGAAAAGACAATTACCCCAATGGGTGGTTTCCCACATTACGGTG
AAGTCAATGAAGACTTTTTGATGATCAAGGGATGTGTCATGGGACCAAAG
AAGAGAGTTATCACTTTAAGAAAGacaCTTCTCCCACAAACCTCGAGAAA
GGCTTTAGAAAAGATATCACTCAAATTCATCGACACCTCATCCAAATTTG
GTCATGGTCGCTTCCAACATGATCAAGAGAAGAAGAACTTCATGGGTCTT
CTCAAGAAAGACAAACAAAATGCTGTTGAAGCTTAAATGTCTCACCGTAA
ATTCCGTGCTCCCCGCCATGGTTCACTTGGGTTTTTGCCACGCAAAAGAT
CAAAGCGTCAAAATGGTAAGATCAAATGCTTCCCCAAGGATGACCAAACA
CAACCCTGCCATTTGACTGGATTTGTTGGTTTCAAAGCTGGTATGACACA
CATTGTAAGAGAGGTAGACAGAGCTGGCtcaaaaactcacaaaaagGAAG
TTGTCGAGGCTGTTACTATTTTGGAAACTCCTCCAATTGTTATTGTTGGA
ATTGTCGGTTATGTTGAAACTCCACGAGGAATGAGACAGCTCACTACTGT
TTGGGCTGAACATCTTAGTGAAGAATGCAGACGTCGATTCTACAAAAACT
GGTACACATCAAAGAGGAAGGCCTTCACTAAATCTAGTAAGAAGTGGTCT
GATGAAAATGGAAAGAAAAGCATTGAACGTGACCTTGAAAAGATGAAGAA
ATACTGCAAAGTTATCAGAGTCTTAGTCCACACTCAACAAAAACTGATcc
gcttgaaacaaaagaaagccCACATCATGGAAATTCAAGTCAATGGTGGT
GACATTGCTGCTAAAGTTGATTGGGCTAAAGAACATTTAGAAAAGACTGT
TTCAGTTGCATCAGTATTTGGTCAAGATGAGATGTTAGACTGCATTGGAA
TCACCAAAGGTCATGGATTCAAAGGTGTCACCTACAGATGGGGTACCAAG
AAATTACCAAGAAAAACACACAAAGGTCTTCGCAAAGTTGCCTGTATTGG
TGCTTGGCATCCTGCCCGTGTTGCATACTCTGTTCCACGTGCTGGTCAAT
GTGGTTACCATCATCGTGTTGAACGAAACAAGAAAGTTTACAGAGTTGGA
CGTGGAGTTCACACCAAGGACAACAAAGTTGTTAAGAACAATGCTGCCAC
AGAATATGATCTCACTGAAAAGACAATTACCCCAATGGGTGGTTTCCCAC
ATTACGGTGAAGTCAATGAAGACTTTTTGATGATCAAGGGATGTGTCATG
GGACCAAAGAAGAGAGTTATCACTTTAAGAAAGacaCTTCTCCCACAAAC
CTCGAGAAAGGCTTTAGAAAAGATATCACTCAAATTCATCGACACCTCAT
CCAAATTTGGTCATGGTCGCTTCCAACATGATCAAGAGAAGAAGAACTTC
ATGGGTCTTCTCAAGAAAGACAAACAAAATGCTGTTGAAGCTTAAATGTC
TCACCGTAAATTCCGTGCTCCCCGCCATGGTTCACTTGGGTTTTTGCCAC
GCAAAAGATCAAAGCGTCAAAATGGTAAGATCAAATGCTTCCCCAAGGAT
GACCAAACACAACCCTGCCATTTGACTGGATTTGTTGGTTTCAAAGCTGG
TATGACACACATTGTAAGAGAGGTAGACAGAGCTGGCtcaaaaactcaca
aaaagGAAGTTGTCGAGGCTGTTACTATTTTGGAAACTCCTCCAATTGTT
ATTGTTGGAATTGTCGGTTATGTTGAAACTCCACGAGGAATGAGACAGCT
CACTACTGTTTGGGCTGAACATCTTAGTGAAGAATGCAGACGTCGATTCT
ACAAAAACTGGTACACATCAAAGAGGAAGGCCTTCACTAAATCTAGTAAG
AAGTGGTCTGATGAAAATGGAAAGAAAAGCATTGAACGTGACCTTGAAAA
GATGAAGAAATACTGCAAAGTTATCAGAGTCTTAGTCCACACTCAACAAA
AACTGATccgcttgaaacaaaagaaagccCACATCATGGAAATTCAAGTC
AATGGTGGTGACATTGCTGCTAAAGTTGATTGGGCTAAAGAACATTTAGA
AAAGACTGTTTCAGTTGCATCAGTATTTGGTCAAGATGAGATGTTAGACT
GCATTGGAATCACCAAAGGTCATGGATTCAAAGGTGTCACCTACAGATGG
GGTACCAAGAAATTACCAAGAAAAACACACAAAGGTCTTCGCAAAGTTGC
CTGTATTGGTGCTTGGCATCCTGCCCGTGTTGCATACTCTGTTCCACGTG
CTGGTCAATGTGGTTACCATCATCGTGTTGAACGAAACAAGAAAGTTTAC
AGAGTTGGACGTGGAGTTCACACCAAGGACAACAAAGTTGTTAAGAACAA
TGCTGCCACAGAATATGATCTCACTGAAAAGACAATTACCCCAATGGGTG
GTTTCCCACATTACGGTGAAGTCAATGAAGACTTTTTGATGATCAAGGGA
TGTGTCATGGGACCAAAGAAGAGAGTTATCACTTTAAGAAAGacaCTTCT
CCCACAAACCTCGAGAAAGGCTTTAGAAAAGATATCACTCAAATTCATCG
ACACCTCATCCAAATTTGGTCATGGTCGCTTCCAACATGATCAAGAGAAG
AAGAACTTCATGGGTCTTCTCAAGAAAGACAAACAAAATGCTGTTGAAGC
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022565-exon-sc0000427-1491911889:164671..164851 | TCONS_00022565-exon-sc0000427-1491911889:164671..164851 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1510915933:164671..164851 | TCONS_00022565-exon-sc0000427-1510915933:164671..164851 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1575043694:164671..164851 | TCONS_00022565-exon-sc0000427-1575043694:164671..164851 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1491911889:164996..165357 | TCONS_00022565-exon-sc0000427-1491911889:164996..165357 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1510915933:164996..165357 | TCONS_00022565-exon-sc0000427-1510915933:164996..165357 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1575043694:164996..165357 | TCONS_00022565-exon-sc0000427-1575043694:164996..165357 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1491911889:165518..165840 | TCONS_00022565-exon-sc0000427-1491911889:165518..165840 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1510915933:165518..165840 | TCONS_00022565-exon-sc0000427-1510915933:165518..165840 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1575043694:165518..165840 | TCONS_00022565-exon-sc0000427-1575043694:165518..165840 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1491911889:166128..166390 | TCONS_00022565-exon-sc0000427-1491911889:166128..166390 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1510915933:166128..166390 | TCONS_00022565-exon-sc0000427-1510915933:166128..166390 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1575043694:166128..166390 | TCONS_00022565-exon-sc0000427-1575043694:166128..166390 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1491911889:167125..167220 | TCONS_00022565-exon-sc0000427-1491911889:167125..167220 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1510915933:167125..167220 | TCONS_00022565-exon-sc0000427-1510915933:167125..167220 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1575043694:167125..167220 | TCONS_00022565-exon-sc0000427-1575043694:167125..167220 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1491911889:168165..168554 | TCONS_00022565-exon-sc0000427-1491911889:168165..168554 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1510915933:168165..168554 | TCONS_00022565-exon-sc0000427-1510915933:168165..168554 | Clytia hemisphaerica | exon |
| TCONS_00022565-exon-sc0000427-1575043694:168165..168554 | TCONS_00022565-exon-sc0000427-1575043694:168165..168554 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000427 | supercontig | sc0000427:164671..168554 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00022565 vs. Swiss-Prot (Human)
Match: RL3 (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2) HSP 1 Score: 593.578 bits (1529), Expect = 0.000e+0 Identity = 286/396 (72.22%), Postives = 341/396 (86.11%), Query Frame = 2
Query: 179 MSHRKFRAPRHGSLGFLPRKRSKRQNGKIKCFPKDDQTQPCHLTGFVGFKAGMTHIVREVDRAGSKTHKKEVVEAVTILETXXXXXXXXXXYVETPRGMRQLTTVWAEHLSEECRRRFYKNWYTSKRKAFTKSSKKWSDENGKKSIERDLEKMKKYCKVIRVLVHTQQKLIRLKQKKAHIMEIQVNGGDIAAKVDWAKEHLEKTVSVASVFGQDEMLDCIGITKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGAWHPARVAYSVPRAGQCGYHHRVERNKKVYRVGRGVHTKDNKVVKNNAATEYDLTEKTITPMGGFPHYGEVNEDFLMIKGCVMGPKKRVITLRKTLLPQTSRKALEKISLKFIDTSSKFGHGRFQHDQEKKNFMGLLKKDK 1366
MSHRKF APRHGSLGFLPRKRS R GK+K FPKDD ++P HLT F+G+KAGMTHIVREVDR GSK +KKEVVEAVTI+ETPP+V+VGIVGYVETPRG+R TV+AEH+S+EC+RRFYKNW+ SK+KAFTK KKW DE+GKK +E+D MKKYC+VIRV+ HTQ +L+ L+QKKAH+MEIQVNGG +A K+DWA+E LE+ V V VFGQDEM+D IG+TKG G+KGVT RW TKKLPRKTH+GLRKVACIGAWHPARVA+SV RAGQ GYHHR E NKK+Y++G+G KD K++KNNA+T+YDL++K+I P+GGF HYGEV DF+M+KGCV+G KKRV+TLRK+LL QT R+ALEKI LKFIDT+SKFGHGRFQ +EKK FMG LKKD+
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDR 396
The following BLAST results are available for this feature:
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