|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022555 ID=TCONS_00022555|Name=TCONS_00022555|organism=Clytia hemisphaerica|type=transcript|length=1670bpRun BLAST on NCBI protein sequence of TCONS_00022555-protein >TCONS_00022555-protein ID=TCONS_00022555-protein|Name=TCONS_00022555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp MNVSQHILAVDARYSNYRFTNDPQNRTLYIRRRSQLLRENAKKENDSSIRRun BLAST on NCBI transcript from alignment at sc0000427:26795..40898+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022555 ID=TCONS_00022555|Name=TCONS_00022555|organism=Clytia hemisphaerica|type=transcript|length=14104bp|location=Sequence derived from alignment at sc0000427:26795..40898+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000427:26795..40898+ >TCONS_00022555 ID=TCONS_00022555|Name=TCONS_00022555|organism=Clytia hemisphaerica|type=CDS|length=19149bp|location=Sequence derived from alignment at sc0000427:26795..40898+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022555 vs. Swiss-Prot (Human)
Match: WDR13 (WD repeat-containing protein 13 OS=Homo sapiens GN=WDR13 PE=1 SV=2) HSP 1 Score: 457.603 bits (1176), Expect = 2.225e-155 Identity = 242/489 (49.49%), Postives = 316/489 (64.62%), Query Frame = 2
Query: 179 VSQHILAVDARYSNYRFTNDPQNRTLYIRRRSQLLRENAKKENDSSIRVNYFNVRKQILAKKYGPVSVTESVRSYN---LRSRNSSIVDLHHSDAHSPYDASFRPQHRRLHSGSSLNWNTKM-LSMTETIPDELILESEGVVPTKKASASRAMAGNTSLSENYTFSGMFHIFDQHAD-SVTSIKFANNDKYLLGCSSKDGSLSVCDLGKFPPAVKFMLLGHKASVNDFDWSIMNDLLTSASSDCTAQLWNSNTGQNIRVIKDNYGSAVNACRFMPLNNNLIVTGNQKGHVQVFNVSTGKCTKDGVAKGTNPIRCLEFDPSGTFLWAGDDKGVLMSFAFNVMSGKLTKSRKIAIGDNCSITSLSARTWVSREARDPSLLVNLASNSLRLYGISPINDDLQLKTTFPIQQAKSRIRSSFCPLMSFRQGACIVTGSEDMSVYFFNIDEPMK-PLNTLLGHSSPVLDVCWNYDESLLCSCDQEGTVIVWKRQQ 1627
V Q +LAVDARY+ YR PQ RT YIRRRSQLLRENAK + ++R Y +R Q+L ++YGP+S S R+Y+ +RS +++ D P R HRR S S +M ++ E P VVPT A ASRAMAG+TSLSENY F+GM+H+FDQH D +V ++FAN+D++ L C S DGS+S+C L PP V +L GH V+DF WS+ ND+L S S D T ++W S G+ IR I D + + C F P+NNNL V GN K +V V N+STGK K G +K T + L FD G LWAGDD G + SF F++ +GKLTK++++ + + +TS+SAR+WVSREARDPSLL+N N L LY + LQLK +FPI+Q+ +RS FCPLMSFRQGAC+VTGSEDM V+FF+++ K +N L GHS+PVLDV +N DESLL S D G VIVW+R+Q
Sbjct: 4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTL-DRMEDFEDDPRALGAR-GHRRSVSRGSYQLQAQMNRAVYEDRP------PGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDHGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484 The following BLAST results are available for this feature:
BLAST of TCONS_00022555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.