TCONS_00022555-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022555-protein
Unique NameTCONS_00022555-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022555-protein ID=TCONS_00022555-protein|Name=TCONS_00022555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp
MNVSQHILAVDARYSNYRFTNDPQNRTLYIRRRSQLLRENAKKENDSSIR
VNYFNVRKQILAKKYGPVSVTESVRSYNLRSRNSSIVDLHHSDAHSPYDA
SFRPQHRRLHSGSSLNWNTKMLSMTETIPDELILESEGVVPTKKASASRA
MAGNTSLSENYTFSGMFHIFDQHADSVTSIKFANNDKYLLGCSSKDGSLS
VCDLGKFPPAVKFMLLGHKASVNDFDWSIMNDLLTSASSDCTAQLWNSNT
GQNIRVIKDNYGSAVNACRFMPLNNNLIVTGNQKGHVQVFNVSTGKCTKD
GVAKGTNPIRCLEFDPSGTFLWAGDDKGVLMSFAFNVMSGKLTKSRKIAI
GDNCSITSLSARTWVSREARDPSLLVNLASNSLRLYGISPINDDLQLKTT
FPIQQAKSRIRSSFCPLMSFRQGACIVTGSEDMSVYFFNIDEPMKPLNTL
LGHSSPVLDVCWNYDESLLCSCDQEGTVIVWKRQQVSPSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012646XLOC_012646Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022555TCONS_00022555Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 163..203
e-value: 0.36
score: 19.8
coord: 294..334
e-value: 29.0
score: 7.8
coord: 208..247
e-value: 6.5E-4
score: 29.0
coord: 250..291
e-value: 0.35
score: 19.8
coord: 443..482
e-value: 5.5E-8
score: 42.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 445..482
e-value: 1.0E-4
score: 22.9
coord: 215..247
e-value: 0.0084
score: 16.8
coord: 168..201
e-value: 0.0098
score: 16.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 450..482
score: 10.041
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 215..256
score: 12.38
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 159..433
e-value: 8.8E-37
score: 126.1
NoneNo IPR availableGENE3D1.10.10.670coord: 434..488
e-value: 1.6E-13
score: 49.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 234..248
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 426..490
score: 10.258
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 170..343
score: 17.482
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 168..484

Blast
[Close]
BLAST of TCONS_00022555-protein vs. Swiss-Prot (Human)
Match: WDR13 (WD repeat-containing protein 13 OS=Homo sapiens GN=WDR13 PE=1 SV=2)

HSP 1 Score: 457.603 bits (1176), Expect = 4.488e-158
Identity = 242/489 (49.49%), Postives = 316/489 (64.62%), Query Frame = 0 
Query:    3 VSQHILAVDARYSNYRFTNDPQNRTLYIRRRSQLLRENAKKENDSSIRVNYFNVRKQILAKKYGPVSVTESVRSYN---LRSRNSSIVDLHHSDAHSPYDASFRPQHRRLHSGSSLNWNTKM-LSMTETIPDELILESEGVVPTKKASASRAMAGNTSLSENYTFSGMFHIFDQHAD-SVTSIKFANNDKYLLGCSSKDGSLSVCDLGKFPPAVKFMLLGHKASVNDFDWSIMNDLLTSASSDCTAQLWNSNTGQNIRVIKDNYGSAVNACRFMPLNNNLIVTGNQKGHVQVFNVSTGKCTKDGVAKGTNPIRCLEFDPSGTFLWAGDDKGVLMSFAFNVMSGKLTKSRKIAIGDNCSITSLSARTWVSREARDPSLLVNLASNSLRLYGISPINDDLQLKTTFPIQQAKSRIRSSFCPLMSFRQGACIVTGSEDMSVYFFNIDEPMK-PLNTLLGHSSPVLDVCWNYDESLLCSCDQEGTVIVWKRQQ 485
            V Q +LAVDARY+ YR    PQ RT YIRRRSQLLRENAK  +  ++R  Y  +R Q+L ++YGP+S   S R+Y+   +RS  +++ D        P     R  HRR  S  S     +M  ++ E  P         VVPT  A ASRAMAG+TSLSENY F+GM+H+FDQH D +V  ++FAN+D++ L C S DGS+S+C L   PP V  +L GH   V+DF WS+ ND+L S S D T ++W S  G+ IR I D   + +  C F P+NNNL V GN K +V V N+STGK  K G +K T  +  L FD  G  LWAGDD G + SF F++ +GKLTK++++ + +   +TS+SAR+WVSREARDPSLL+N   N L LY +      LQLK +FPI+Q+   +RS FCPLMSFRQGAC+VTGSEDM V+FF+++   K  +N L GHS+PVLDV +N DESLL S D  G VIVW+R+Q
Sbjct:    4 VWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTL-DRMEDFEDDPRALGAR-GHRRSVSRGSYQLQAQMNRAVYEDRP------PGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDHGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQ 484
The following BLAST results are available for this feature:
BLAST of TCONS_00022555-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR134.488e-15849.49WD repeat-containing protein 13 OS=Homo sapiens GN... [more]
back to top