TCONS_00022530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022530
Unique NameTCONS_00022530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022530 ID=TCONS_00022530|Name=TCONS_00022530|organism=Clytia hemisphaerica|type=transcript|length=2288bp
TCCAGGGTTGCGCTTACCAAGCGTATGATTTATAGCCAAccatatatttt
taaaaCCAAAGAAAAATACATGCGTCCCTTAATAATACACATATCAAATG
AACACAAGGAGGCGTCGAACGAAATCTGGAAGCAAAGAGGACAACAAGGA
AAATTTCAATGCAGGCTACGGAATACCTTTGACAAATAGTGGAAAAACAT
TTACAGAAACTTCACAAAATTACAATCAAGTGATTGTTGATCCTATTGAT
ATGTCATGTCGTGATAGAACAGGAGAATTTTTATCTGCAGTCAAATCTTT
GCAATCAAGTCAGTTAAATGGTCATGCTGGCAGGCATGGGGCTAACAATG
GAAAGAAAGTACAACCTAGTCCGTTTACAATGGCTTCACGAAAAATTGGA
AGAGACATAAATAATACTTTTAATAAACTAGAAAAACTAGCAATATtGGC
AAAACGAAAATCACTATTCAACGACAAACCTAAAGAAATACAAGAATTGA
CTTATATTATAAAACAGGACATAAATCATTTAAACCAACAGATCAGTGAT
CTGCAACAGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAATGTGCA
GGCACATTCACATACAGTGGTCATGTCACTTCAAAGTAAATTGGCTTATA
TGTCAAAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAGAATATGAAA
CACCAAAAAAATAGGAGGGATCAGTTCTCACAAGGAGCCGTCGCTGAAAC
CTTACCGTCCACACAAGTCGCATCAAACTCACTATTGCACAGAAATGTAG
GCGGGAACTCATCACAATCTGATACAGTGTCTCTGGACATGGAACCGCTG
TTAGCGTCCAATAATCAAGCACAGCTTTATGAAGAGGATGATGAGTACGT
CAAAAGTCGAGCCACAGCAATGGAGAGTATTGAACAGACTATTGTCGAAT
TGGGTGGTATTTTTCAACAGCTGGCACACTTGGTTAGTGAGCAAGAAGAA
CAAATCAAAAGAATTGATGCAAATGTCGAGGATACAGAAATGAACGTGGA
AGCAGCACACAGTGAACtactcaaatattttcaaaacatctcATCAAACA
GCTTCAACTCTTATTTTACATCTTTCTAAACTAATAAATCCAGCAAAAAA
TCCACAGTGTGATCTTATTTAAGATCCTAAATAATCTACACTGCAAAGAA
GCACACGCGAAATTTTAAATTATACGtattatttttgttcatttttattt
tgcaaTTATGATTATGtttctttaaaatcttttatgAAACGAGGAAAAAT
GACAGGAAGGAGAACGTGGTTATTAAATATTTTAATCCACACCTTTAGTG
GGTAaggattttatttatttcattttatatgATGATGTTTTTAACTGAGA
GGATGGCTGAaggatttaaaggttttattttcacataagtgtttccgttt
catatcaggacagtgtcttgcttttgttatattatgttgatgtaagaaaa
aaaaaatttttcttttcctctttctgaccaatcttgctcgacatccgtgt
caatccaatgtgaaaaccatgtaaattaaaattgatgagtaagcaaacgt
tatcactcttatttaaaaacaaaacctttaattcttATGATGTTATCATT
CTcttaattaaaagaaaaattgccaATTAactaataaaattgaaattaca
cAAGCTTTACAATCGTAGCAATCGCACTGTACAATTTTCTGTATTACTTT
GTGACTGTACAATTTCGTTTTCGTTTCAAATCATTCTAGTTGCATGTATG
GAGGTCATTTATAAGCTTTTCCACTTAATATTGCACTTTGAAATTTGAAC
TCTAATGGCATTATCTTTATAATGACCATCATAAAATCCGTTTCGAAAAC
CTGTGTCAGTTTTCATACAAAACAACCTATTGACAGAATTTTGTATATAC
TATGTCAAATTTATTGTGTCAAATTGTAGTGAAATATTGCATATTTGAGA
CATGATTTGACCTCTTTTGAAagagaaattgtttgaatagTAGATAAATT
CTATGTTCATAACACCAGCTTTCAGCCAGCCTCTTTTAATTTATATGAAA
TGATATAGataatgttattattattactattattattttttggttggttg
tcaatttatataaaaataaatgaatggataacaatatattttttgatttt
gaaatttcaattttgatccaTAAAATCTTTTATTACATACCTCTCATCTC
AGATAGGAATGCTTATCTATGAGctaaactgatttttg
Run BLAST on NCBI

protein sequence of TCONS_00022530-protein

>TCONS_00022530-protein ID=TCONS_00022530-protein|Name=TCONS_00022530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MNTRRRRTKSGSKEDNKENFNAGYGIPLTNSGKTFTETSQNYNQVIVDPI
DMSCRDRTGEFLSAVKSLQSSQLNGHAGRHGANNGKKVQPSPFTMASRKI
GRDINNTFNKLEKLAILAKRKSLFNDKPKEIQELTYIIKQDINHLNQQIS
DLQQFVNRSDSGNSKNVQAHSHTVVMSLQSKLAYMSKDFKHVLEVRTENM
KHQKNRRDQFSQGAVAETLPSTQVASNSLLHRNVGGNSSQSDTVSLDMEP
LLASNNQAQLYEEDDEYVKSRATAMESIEQTIVELGGIFQQLAHLVSEQE
EQIKRIDANVEDTEMNVEAAHSELLKYFQNISSNSFNSYFTSF
Run BLAST on NCBI

transcript from alignment at sc0000424:248073..254308+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022530 ID=TCONS_00022530|Name=TCONS_00022530|organism=Clytia hemisphaerica|type=transcript|length=6236bp|location=Sequence derived from alignment at sc0000424:248073..254308+ (Clytia hemisphaerica)
TCCAGGGTTGCGCTTACCAAGCGTATGATTTATAGCCAAccatatatttt
taaaagtattaATCATTGCATTGTGATTAAGAAAAGGTTTTATAGATAAA
TAATTTCGAACAAGTTGCTAAAAGATTTCAGTTCTTTGACAAAAATCTGC
AATAATGTTCACCTGTTTTGTGTAGTCAAATTTCAATTTGAGCATATAGG
ATGCTTCAAATGTTGTTTGAAAACAAGTGGTAATAGAATATTGGCCCTTT
TTGCCTATGCCAGAATAGTAAAGTATTGTTTTGGAGAGTTTCTTAAAAAG
GAAATTTAACAGTGACCAGTAATGAGAAAAGTTGAATGGTATTAGATAAC
ATCAACTTTATCGAACTCTATTAACAGCCAAAGAAAAATACATGCGTCCC
TTAATAATACACATATCAAATGAACACAAGGAGGCGTCGAACGAAATCTG
GAAGCAAAGAGGACAACAAGGAAAATTTCAATGCAGGCTACGGAATACCT
TTGACAAATAGTGGAAAAACATTTACAGAAACTTCACAAAATTACAATCA
AGTGATTGTTGATCCTATTGATATGTCATGTCGTGATAGAACAGGAGAAT
TTTTATCTGCAGTCAAATCTTTGCAATCAAGTCAGGTTTGATCATTTTTT
CATATCAGTTTTTTGCTTGGCAATCATGAATAACTTTAGCAAACCTATTC
TGTTATATTTATCATCAAGCCCTTAGTGCTACCTTAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNACATTTTTAGGGGGTGAGAGGGTCATGAT
TGACCAAAATCACATGTCAAAtttaagtcataacttttgaaatctaaatt
tttacctaTTGAGACTGATGTGGTTCAGAAACTAGATCGAAAAATGCGTT
GAATGGTATATATTTCATTATTATatgctgaaatcaaattttcacttttg
gtggtgacgtcatcatttgacaaattaccaccggacatgtccgttaaata
aattttcggacgccgagtaaaatttttaggatcagtagatatatggaaac
aagaaaaatcaactcgacgtttgtcccaaagtcgtccagattttagatgt
cgtcagctgcctgtctacaTATATGTTATTTGCCAAGAACAAATCTCAGA
AAAGTACATGAGGCGTCAAAATTAATAAAGGAGTGCAAAAGTTAATGGGA
ttcattttattctttttttaaagcacTGGTAGAatctatttttaatttta
tacaAATCTTTATTGTGTAAGTCTTCTTGCTTTCTGTTTCTTAAATTAAT
TCCATTCGTTCTTGGCATTTTAGTTAAATGGTCATGCTGGCAGGCATGGG
GCTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTACAATGGCTTCACG
AAAAATTGGAAGAGACATAAATAATACTTTTAATAAACTAGAAAAACTAG
CAATATGTAAGTCTTCTTTATTAAAGCTTTTTCATTCGTGAGAGCTCTGT
AGAAAATTGACTCTAGTGTTCCTtaaagtggattaaatttcaagtggata
aatttttgtaatttttaaactttgtccTTTTGTAAAAGAAATTAAGTAAA
AAGAGATTGATTTGCAAGTTTTTAATCCACTCAAAAGCTTCAGACTCTCA
ATTCCATGTGAAAATTAATCTTAATTAagctttttaatattttgttttga
ttttcattttctagtGGCAAAACGAAAATCACTATTCAACGACAAACCTA
AAGAAATACAAGAATTGACTTATATTATAAAACAGGTgctttcattttgt
ttgtttatccaATACAGAGTGTATATACAAGTTGTCTCACACAACTGAGG
CTTAAAAGTAGTAAATGTTCAAACTTTGGAATCTATTGGTACCATGGTAA
GTCTTTTGAGGTTTTTAGTGATTTTAACAATACTTTTTGATTCATATTAT
AGGACATAAATCATTTAAACCAACAGATCAGTGATCTGCAACAGGTAACG
GACATTCGTTTTCAGATGTTTACTAAATTAATCTAAGACTTAATCAAACT
AGTTCCCCTGGAGAGGGGGTCAATTGTCTAAGCCAAGGTCACATAATCTA
GTTTTAGTTATTTGATTCATCAGACATTGTTAGAATGTAACATCTTAAAA
TATTTAGACCCCGTATCCAAATCCAACTGTTTCCGCACGTGATAAACCCT
GATCAATCTGTTAAAGATTTAAATTCTTTcttcaaattgttcttttttac
aGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAATGTGCAGGCACAT
TCACATACAGTGGTCATGTCACTTCAAGTAAGTCTAAATTATTTCTCATT
tgtttaaataaaaatagaactctgattttgaaattcaCTTTTTAAAATAA
TGCAAATGATTAGTTACTCTATAGGTGACCGAACACATACGTATGATTTT
TTGACTGTATGCCTTTGACATGTGTTTTGGTGATTCGAGAAACCTCTTGA
AGAGTTCTGGACATTGATAATACATTGCAGTTGTTTTTGGAGTCGTTTCT
AAAATACTTAGTCTTCTCTAGttatatcattttcaaaatttactttaTTG
TTCACGAGGAATAGTCCCACAACAAAATGAAATCCTTTGAAaccttttta
ttatattttgttttctaGAGTAAATTGGCTTATATGTCAAAAGACTTTAA
ACATGTCCTTGAAGTAAGGACAGAGGTATGTATATAGGtggttttcttcc
tttttcaaaatctcaaaTTTGGACAACCTAATGATTCCAGATGATTCCAT
TATACTCCTTAAAATGTGAAAGTATATGTCTCAAATAATATCATAGCTTT
TTCTGTTACTAAATATTATTGTAATCTAATACAAAATTTTGTAGAATATG
AAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAGGAGCCGTCGCTGA
AACCTTACCGTCCACACAAGTCGCATCAAACTCACTATTGCACAGAAATG
TAGGCGGGAACTCATCACAATCTGATACAGTGTCTCTGGACATGGAACCG
CTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAGAGGATGATGAGTA
CGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAACAGACTATTGTCG
AATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGTTAGTGAGCAAGAA
GAACAAATCAAAAGGTACGTCAGAGAAGCAATATTCATTTTATCagtttg
ataattttttgataCTACGTTTTTTGTTATatgaacaaagtatataagaa
cttTACgcttcaaaaccaaaaaaaattaagaacgttctaagaacattata
aggcttTGTTTATTCTGAAACATAGATTTCCTtaggcaattttttcaaaa
aatactctGAAAATGTCAACAATTTTTAGAACATTTATACTCTTAAAACC
CAAGAAGTTAAGAACgcctaaaagtttgaaaaggtttaaatgttctaata
aaaaaatgtgtggTATATTTACTTCAAAGTATTTGTGGGAGACAAAATGT
TGCTCTTCTTTTCTAGTATTAAGCGGTTAAACATTGTATAcaggttttta
agattttggttgcttttccttcaaagaaaatCACTTTGCCAACACGATTT
ATAAAAACTTTGTTTGGATCTGTCCATATTACAGTCGGTGAGGAATAAAA
ATGTAAATTATtcttgttggacctaccccgatggaggtcctataaattaa
ccgttgtatgtttgtctgttcgttcgttagttaccagcttttctcgagat
tggctcattagtttttttcggactttttgcacaaagatgcataactataa
accctcgagtgtgacggagcccgattttagaaaaaaaaaaatttgggcga
atttgggccaaaaaacggctaaaaaaaattggtccctaaaagtatcactt
gttttcacTATTTTCAGAATTGATGCAAATGTCGAGGATACAGAAATGAA
CGTGGAAGCAGCACACAGTGAACtactcaaatattttcaaaacatctcAT
CAAACAGGTGGCttatcatcaaaatatttttcactctCATCATCTTTTTT
ATCATCTTTGTTGTGTTTATGGCGTGAAAAAATCCTCCTCTTTGTCTCGT
ATCAGCCCATAAAGCGTGAGGAGACTTGGCTAGGGTGTATTCTTACTGAG
AAGGATTGATGTCATTTATTTAAAGTCGTTACACTGATTTTCTTTTACAA
AACACAGACGTTTTGACACCATTCCTTGCTTATAAACTTTAACCAGTCTC
ATCATGTTTTATTAAGGGATGATTTATgtattcttgtaaaactgtttACG
TTTCAAACTCTTGATCTTCGTCATTTCTcccttttttgaattaaaagatG
TTAGGATCTCAAATGTTACTACCctgaattttttaatatttttaagaaga
aaTTTTAACATTGGGAAAATCATTTAGATGTAGAATTTATTCAGTTAGTG
CTAATTATTCGAAGGAAATTTGCAGGATGGTGTTGTAATTCTTTTTTAGC
TTCAACTCTTATTTTACATCTTTCTAAACTAATAAATCCAGCAAAAAATC
CACAGTGTGATCTTATTTAAGATCCTAAATAATCTACACTGCAAAGAAGC
ACACGCGAAATTTTAAATTATACGtattatttttgttcatttttattttg
caaTTATGATTATGtttctttaaaatcttttatgAAACGAGGAAAAATGA
CAGGAAGGAGAACGTGGTTATTAAATATTTTAATCCACACCTTTAGTGGG
TAaggattttatttatttcattttatatgATGATGTTTTTAACTGAGAGG
ATGGCTGAaggatttaaaggttttattttcacataagtgtttccgtttca
tatcaggacagtgtcttgcttttgttatattatgttgatgtaagaaaaaa
aaaatttttcttttcctctttctgaccaatcttgctcgacatccgtgtca
atccaatgtgaaaaccatgtaaattaaaattgatgagtaagcaaacgtta
tcactcttatttaaaaacaaaacctttaattcttATGATGTTATCATTCT
cttaattaaaagaaaaattgccaATTAactaataaaattgaaattacacA
AGCTTTACAATCGTAGCAATCGCACTGTACAATTTTCTGTATTACTTTGT
GACTGTACAATTTCGTTTTCGTTTCAAATCATTCTAGTTGCATGTATGGA
GGTCATTTATAAGCTTTTCCACTTAATATTGCACTTTGAAATTTGAACTC
TAATGGCATTATCTTTATAATGACCATCATAAAATCCGTTTCGAAAACCT
GTGTCAGTTTTCATACAAAACAACCTATTGACAGAATTTTGTATATACTA
TGTCAAATTTATTGTGTCAAATTGTAGTGAAATATTGCATATTTGAGACA
TGATTTGACCTCTTTTGAAagagaaattgtttgaatagTAGATAAATTCT
ATGTTCATAACACCAGCTTTCAGCCAGCCTCTTTTAATTTATATGAAATG
ATATAGataatgttattattattactattattattttttggttggttgtc
aatttatataaaaataaatgaatggataacaatatattttttgattttga
aatttcaattttgatccaTAAAATCTTTTATTACATACCTCTCATCTCAG
ATAGGAATGCTTATCTATGAGctaaactgatttttg

Coding sequence (CDS) from alignment at sc0000424:248073..254308+

>TCONS_00022530 ID=TCONS_00022530|Name=TCONS_00022530|organism=Clytia hemisphaerica|type=CDS|length=9288bp|location=Sequence derived from alignment at sc0000424:248073..254308+ (Clytia hemisphaerica)
ATGAACACAAGGAGGCGTCGAACGAAATCTGGAAGCAAAGAGGACAACAA
GGAAAATTTCAATGCAGGCTACGGAATACCTTTGACAAATAGTGGAAAAA
CATTTACAGAAACTTCACAAAATTACAATCAAGTGATTGTTGATCCTATT
GATATGTCATGTCGTGATAGAACAGGAGAATTTTTATCTGCAGTCAAATC
TTTGCAATCAAGTCAGTTAAATGGTCATGCTGGCAGGCATGGGGCTAACA
ATGGAAAGAAAGTACAACCTAGTCCGTTTACAATGGCTTCACGAAAAATT
GGAAGAGACATAAATAATACTTTTAATAAACTAGAAAAACTAGCAATATt
GGCAAAACGAAAATCACTATTCAACGACAAACCTAAAGAAATACAAGAAT
TGACTTATATTATAAAACAGGACATAAATCATTTAAACCAACAGATCAGT
GATCTGCAACAGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAATGT
GCAGGCACATTCACATACAGTGGTCATGTCACTTCAAAGTAAATTGGCTT
ATATGTCAAAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAGAATATG
AAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAGGAGCCGTCGCTGA
AACCTTACCGTCCACACAAGTCGCATCAAACTCACTATTGCACAGAAATG
TAGGCGGGAACTCATCACAATCTGATACAGTGTCTCTGGACATGGAACCG
CTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAGAGGATGATGAGTA
CGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAACAGACTATTGTCG
AATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGTTAGTGAGCAAGAA
GAACAAATCAAAAGAATTGATGCAAATGTCGAGGATACAGAAATGAACGT
GGAAGCAGCACACAGTGAACtactcaaatattttcaaaacatctcATCAA
ACAGCTTCAACTCTTATTTTACATCTTTCTAAATGAACACAAGGAGGCGT
CGAACGAAATCTGGAAGCAAAGAGGACAACAAGGAAAATTTCAATGCAGG
CTACGGAATACCTTTGACAAATAGTGGAAAAACATTTACAGAAACTTCAC
AAAATTACAATCAAGTGATTGTTGATCCTATTGATATGTCATGTCGTGAT
AGAACAGGAGAATTTTTATCTGCAGTCAAATCTTTGCAATCAAGTCAGTT
AAATGGTCATGCTGGCAGGCATGGGGCTAACAATGGAAAGAAAGTACAAC
CTAGTCCGTTTACAATGGCTTCACGAAAAATTGGAAGAGACATAAATAAT
ACTTTTAATAAACTAGAAAAACTAGCAATATtGGCAAAACGAAAATCACT
ATTCAACGACAAACCTAAAGAAATACAAGAATTGACTTATATTATAAAAC
AGGACATAAATCATTTAAACCAACAGATCAGTGATCTGCAACAGTTTGTA
AATAGAAGTGATTCCGGGAACAGTAAAAATGTGCAGGCACATTCACATAC
AGTGGTCATGTCACTTCAAAGTAAATTGGCTTATATGTCAAAAGACTTTA
AACATGTCCTTGAAGTAAGGACAGAGAATATGAAACACCAAAAAAATAGG
AGGGATCAGTTCTCACAAGGAGCCGTCGCTGAAACCTTACCGTCCACACA
AGTCGCATCAAACTCACTATTGCACAGAAATGTAGGCGGGAACTCATCAC
AATCTGATACAGTGTCTCTGGACATGGAACCGCTGTTAGCGTCCAATAAT
CAAGCACAGCTTTATGAAGAGGATGATGAGTACGTCAAAAGTCGAGCCAC
AGCAATGGAGAGTATTGAACAGACTATTGTCGAATTGGGTGGTATTTTTC
AACAGCTGGCACACTTGGTTAGTGAGCAAGAAGAACAAATCAAAAGAATT
GATGCAAATGTCGAGGATACAGAAATGAACGTGGAAGCAGCACACAGTGA
ACtactcaaatattttcaaaacatctcATCAAACAGCTTCAACTCTTATT
TTACATCTTTCTAAATGAACACAAGGAGGCGTCGAACGAAATCTGGAAGC
AAAGAGGACAACAAGGAAAATTTCAATGCAGGCTACGGAATACCTTTGAC
AAATAGTGGAAAAACATTTACAGAAACTTCACAAAATTACAATCAAGTGA
TTGTTGATCCTATTGATATGTCATGTCGTGATAGAACAGGAGAATTTTTA
TCTGCAGTCAAATCTTTGCAATCAAGTCAGTTAAATGGTCATGCTGGCAG
GCATGGGGCTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTACAATGG
CTTCACGAAAAATTGGAAGAGACATAAATAATACTTTTAATAAACTAGAA
AAACTAGCAATATtGGCAAAACGAAAATCACTATTCAACGACAAACCTAA
AGAAATACAAGAATTGACTTATATTATAAAACAGGACATAAATCATTTAA
ACCAACAGATCAGTGATCTGCAACAGTTTGTAAATAGAAGTGATTCCGGG
AACAGTAAAAATGTGCAGGCACATTCACATACAGTGGTCATGTCACTTCA
AAGTAAATTGGCTTATATGTCAAAAGACTTTAAACATGTCCTTGAAGTAA
GGACAGAGAATATGAAACACCAAAAAAATAGGAGGGATCAGTTCTCACAA
GGAGCCGTCGCTGAAACCTTACCGTCCACACAAGTCGCATCAAACTCACT
ATTGCACAGAAATGTAGGCGGGAACTCATCACAATCTGATACAGTGTCTC
TGGACATGGAACCGCTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAA
GAGGATGATGAGTACGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGA
ACAGACTATTGTCGAATTGGGTGGTATTTTTCAACAGCTGGCACACTTGG
TTAGTGAGCAAGAAGAACAAATCAAAAGAATTGATGCAAATGTCGAGGAT
ACAGAAATGAACGTGGAAGCAGCACACAGTGAACtactcaaatattttca
aaacatctcATCAAACAGCTTCAACTCTTATTTTACATCTTTCTAAATGA
ACACAAGGAGGCGTCGAACGAAATCTGGAAGCAAAGAGGACAACAAGGAA
AATTTCAATGCAGGCTACGGAATACCTTTGACAAATAGTGGAAAAACATT
TACAGAAACTTCACAAAATTACAATCAAGTGATTGTTGATCCTATTGATA
TGTCATGTCGTGATAGAACAGGAGAATTTTTATCTGCAGTCAAATCTTTG
CAATCAAGTCAGTTAAATGGTCATGCTGGCAGGCATGGGGCTAACAATGG
AAAGAAAGTACAACCTAGTCCGTTTACAATGGCTTCACGAAAAATTGGAA
GAGACATAAATAATACTTTTAATAAACTAGAAAAACTAGCAATATtGGCA
AAACGAAAATCACTATTCAACGACAAACCTAAAGAAATACAAGAATTGAC
TTATATTATAAAACAGGACATAAATCATTTAAACCAACAGATCAGTGATC
TGCAACAGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAATGTGCAG
GCACATTCACATACAGTGGTCATGTCACTTCAAAGTAAATTGGCTTATAT
GTCAAAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAGAATATGAAAC
ACCAAAAAAATAGGAGGGATCAGTTCTCACAAGGAGCCGTCGCTGAAACC
TTACCGTCCACACAAGTCGCATCAAACTCACTATTGCACAGAAATGTAGG
CGGGAACTCATCACAATCTGATACAGTGTCTCTGGACATGGAACCGCTGT
TAGCGTCCAATAATCAAGCACAGCTTTATGAAGAGGATGATGAGTACGTC
AAAAGTCGAGCCACAGCAATGGAGAGTATTGAACAGACTATTGTCGAATT
GGGTGGTATTTTTCAACAGCTGGCACACTTGGTTAGTGAGCAAGAAGAAC
AAATCAAAAGAATTGATGCAAATGTCGAGGATACAGAAATGAACGTGGAA
GCAGCACACAGTGAACtactcaaatattttcaaaacatctcATCAAACAG
CTTCAACTCTTATTTTACATCTTTCTAAATGAACACAAGGAGGCGTCGAA
CGAAATCTGGAAGCAAAGAGGACAACAAGGAAAATTTCAATGCAGGCTAC
GGAATACCTTTGACAAATAGTGGAAAAACATTTACAGAAACTTCACAAAA
TTACAATCAAGTGATTGTTGATCCTATTGATATGTCATGTCGTGATAGAA
CAGGAGAATTTTTATCTGCAGTCAAATCTTTGCAATCAAGTCAGTTAAAT
GGTCATGCTGGCAGGCATGGGGCTAACAATGGAAAGAAAGTACAACCTAG
TCCGTTTACAATGGCTTCACGAAAAATTGGAAGAGACATAAATAATACTT
TTAATAAACTAGAAAAACTAGCAATATtGGCAAAACGAAAATCACTATTC
AACGACAAACCTAAAGAAATACAAGAATTGACTTATATTATAAAACAGGA
CATAAATCATTTAAACCAACAGATCAGTGATCTGCAACAGTTTGTAAATA
GAAGTGATTCCGGGAACAGTAAAAATGTGCAGGCACATTCACATACAGTG
GTCATGTCACTTCAAAGTAAATTGGCTTATATGTCAAAAGACTTTAAACA
TGTCCTTGAAGTAAGGACAGAGAATATGAAACACCAAAAAAATAGGAGGG
ATCAGTTCTCACAAGGAGCCGTCGCTGAAACCTTACCGTCCACACAAGTC
GCATCAAACTCACTATTGCACAGAAATGTAGGCGGGAACTCATCACAATC
TGATACAGTGTCTCTGGACATGGAACCGCTGTTAGCGTCCAATAATCAAG
CACAGCTTTATGAAGAGGATGATGAGTACGTCAAAAGTCGAGCCACAGCA
ATGGAGAGTATTGAACAGACTATTGTCGAATTGGGTGGTATTTTTCAACA
GCTGGCACACTTGGTTAGTGAGCAAGAAGAACAAATCAAAAGAATTGATG
CAAATGTCGAGGATACAGAAATGAACGTGGAAGCAGCACACAGTGAACta
ctcaaatattttcaaaacatctcATCAAACAGCTTCAACTCTTATTTTAC
ATCTTTCTAAATGAACACAAGGAGGCGTCGAACGAAATCTGGAAGCAAAG
AGGACAACAAGGAAAATTTCAATGCAGGCTACGGAATACCTTTGACAAAT
AGTGGAAAAACATTTACAGAAACTTCACAAAATTACAATCAAGTGATTGT
TGATCCTATTGATATGTCATGTCGTGATAGAACAGGAGAATTTTTATCTG
CAGTCAAATCTTTGCAATCAAGTCAGTTAAATGGTCATGCTGGCAGGCAT
GGGGCTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTACAATGGCTTC
ACGAAAAATTGGAAGAGACATAAATAATACTTTTAATAAACTAGAAAAAC
TAGCAATATtGGCAAAACGAAAATCACTATTCAACGACAAACCTAAAGAA
ATACAAGAATTGACTTATATTATAAAACAGGACATAAATCATTTAAACCA
ACAGATCAGTGATCTGCAACAGTTTGTAAATAGAAGTGATTCCGGGAACA
GTAAAAATGTGCAGGCACATTCACATACAGTGGTCATGTCACTTCAAAGT
AAATTGGCTTATATGTCAAAAGACTTTAAACATGTCCTTGAAGTAAGGAC
AGAGAATATGAAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAGGAG
CCGTCGCTGAAACCTTACCGTCCACACAAGTCGCATCAAACTCACTATTG
CACAGAAATGTAGGCGGGAACTCATCACAATCTGATACAGTGTCTCTGGA
CATGGAACCGCTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAGAGG
ATGATGAGTACGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAACAG
ACTATTGTCGAATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGTTAG
TGAGCAAGAAGAACAAATCAAAAGAATTGATGCAAATGTCGAGGATACAG
AAATGAACGTGGAAGCAGCACACAGTGAACtactcaaatattttcaaaac
atctcATCAAACAGCTTCAACTCTTATTTTACATCTTTCTAAATGAACAC
AAGGAGGCGTCGAACGAAATCTGGAAGCAAAGAGGACAACAAGGAAAATT
TCAATGCAGGCTACGGAATACCTTTGACAAATAGTGGAAAAACATTTACA
GAAACTTCACAAAATTACAATCAAGTGATTGTTGATCCTATTGATATGTC
ATGTCGTGATAGAACAGGAGAATTTTTATCTGCAGTCAAATCTTTGCAAT
CAAGTCAGTTAAATGGTCATGCTGGCAGGCATGGGGCTAACAATGGAAAG
AAAGTACAACCTAGTCCGTTTACAATGGCTTCACGAAAAATTGGAAGAGA
CATAAATAATACTTTTAATAAACTAGAAAAACTAGCAATATtGGCAAAAC
GAAAATCACTATTCAACGACAAACCTAAAGAAATACAAGAATTGACTTAT
ATTATAAAACAGGACATAAATCATTTAAACCAACAGATCAGTGATCTGCA
ACAGTTTGTAAATAGAAGTGATTCCGGGAACAGTAAAAATGTGCAGGCAC
ATTCACATACAGTGGTCATGTCACTTCAAAGTAAATTGGCTTATATGTCA
AAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAGAATATGAAACACCA
AAAAAATAGGAGGGATCAGTTCTCACAAGGAGCCGTCGCTGAAACCTTAC
CGTCCACACAAGTCGCATCAAACTCACTATTGCACAGAAATGTAGGCGGG
AACTCATCACAATCTGATACAGTGTCTCTGGACATGGAACCGCTGTTAGC
GTCCAATAATCAAGCACAGCTTTATGAAGAGGATGATGAGTACGTCAAAA
GTCGAGCCACAGCAATGGAGAGTATTGAACAGACTATTGTCGAATTGGGT
GGTATTTTTCAACAGCTGGCACACTTGGTTAGTGAGCAAGAAGAACAAAT
CAAAAGAATTGATGCAAATGTCGAGGATACAGAAATGAACGTGGAAGCAG
CACACAGTGAACtactcaaatattttcaaaacatctcATCAAACAGCTTC
AACTCTTATTTTACATCTTTCTAAATGAACACAAGGAGGCGTCGAACGAA
ATCTGGAAGCAAAGAGGACAACAAGGAAAATTTCAATGCAGGCTACGGAA
TACCTTTGACAAATAGTGGAAAAACATTTACAGAAACTTCACAAAATTAC
AATCAAGTGATTGTTGATCCTATTGATATGTCATGTCGTGATAGAACAGG
AGAATTTTTATCTGCAGTCAAATCTTTGCAATCAAGTCAGTTAAATGGTC
ATGCTGGCAGGCATGGGGCTAACAATGGAAAGAAAGTACAACCTAGTCCG
TTTACAATGGCTTCACGAAAAATTGGAAGAGACATAAATAATACTTTTAA
TAAACTAGAAAAACTAGCAATATtGGCAAAACGAAAATCACTATTCAACG
ACAAACCTAAAGAAATACAAGAATTGACTTATATTATAAAACAGGACATA
AATCATTTAAACCAACAGATCAGTGATCTGCAACAGTTTGTAAATAGAAG
TGATTCCGGGAACAGTAAAAATGTGCAGGCACATTCACATACAGTGGTCA
TGTCACTTCAAAGTAAATTGGCTTATATGTCAAAAGACTTTAAACATGTC
CTTGAAGTAAGGACAGAGAATATGAAACACCAAAAAAATAGGAGGGATCA
GTTCTCACAAGGAGCCGTCGCTGAAACCTTACCGTCCACACAAGTCGCAT
CAAACTCACTATTGCACAGAAATGTAGGCGGGAACTCATCACAATCTGAT
ACAGTGTCTCTGGACATGGAACCGCTGTTAGCGTCCAATAATCAAGCACA
GCTTTATGAAGAGGATGATGAGTACGTCAAAAGTCGAGCCACAGCAATGG
AGAGTATTGAACAGACTATTGTCGAATTGGGTGGTATTTTTCAACAGCTG
GCACACTTGGTTAGTGAGCAAGAAGAACAAATCAAAAGAATTGATGCAAA
TGTCGAGGATACAGAAATGAACGTGGAAGCAGCACACAGTGAACtactca
aatattttcaaaacatctcATCAAACAGCTTCAACTCTTATTTTACATCT
TTCTAAATGAACACAAGGAGGCGTCGAACGAAATCTGGAAGCAAAGAGGA
CAACAAGGAAAATTTCAATGCAGGCTACGGAATACCTTTGACAAATAGTG
GAAAAACATTTACAGAAACTTCACAAAATTACAATCAAGTGATTGTTGAT
CCTATTGATATGTCATGTCGTGATAGAACAGGAGAATTTTTATCTGCAGT
CAAATCTTTGCAATCAAGTCAGTTAAATGGTCATGCTGGCAGGCATGGGG
CTAACAATGGAAAGAAAGTACAACCTAGTCCGTTTACAATGGCTTCACGA
AAAATTGGAAGAGACATAAATAATACTTTTAATAAACTAGAAAAACTAGC
AATATtGGCAAAACGAAAATCACTATTCAACGACAAACCTAAAGAAATAC
AAGAATTGACTTATATTATAAAACAGGACATAAATCATTTAAACCAACAG
ATCAGTGATCTGCAACAGTTTGTAAATAGAAGTGATTCCGGGAACAGTAA
AAATGTGCAGGCACATTCACATACAGTGGTCATGTCACTTCAAAGTAAAT
TGGCTTATATGTCAAAAGACTTTAAACATGTCCTTGAAGTAAGGACAGAG
AATATGAAACACCAAAAAAATAGGAGGGATCAGTTCTCACAAGGAGCCGT
CGCTGAAACCTTACCGTCCACACAAGTCGCATCAAACTCACTATTGCACA
GAAATGTAGGCGGGAACTCATCACAATCTGATACAGTGTCTCTGGACATG
GAACCGCTGTTAGCGTCCAATAATCAAGCACAGCTTTATGAAGAGGATGA
TGAGTACGTCAAAAGTCGAGCCACAGCAATGGAGAGTATTGAACAGACTA
TTGTCGAATTGGGTGGTATTTTTCAACAGCTGGCACACTTGGTTAGTGAG
CAAGAAGAACAAATCAAAAGAATTGATGCAAATGTCGAGGATACAGAAAT
GAACGTGGAAGCAGCACACAGTGAACtactcaaatattttcaaaacatct
cATCAAACAGCTTCAACTCTTATTTTACATCTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012630XLOC_012630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022530-exon-sc0000424-1491911889:248073..248127TCONS_00022530-exon-sc0000424-1491911889:248073..248127Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:248073..248127TCONS_00022530-exon-sc0000424-1510915933:248073..248127Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:248073..248127TCONS_00022530-exon-sc0000424-1575043694:248073..248127Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:248450..248707TCONS_00022530-exon-sc0000424-1491911889:248450..248707Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:248450..248707TCONS_00022530-exon-sc0000424-1510915933:248450..248707Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:248450..248707TCONS_00022530-exon-sc0000424-1575043694:248450..248707Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:249896..250028TCONS_00022530-exon-sc0000424-1491911889:249896..250028Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:249896..250028TCONS_00022530-exon-sc0000424-1510915933:249896..250028Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:249896..250028TCONS_00022530-exon-sc0000424-1575043694:249896..250028Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:250287..250357TCONS_00022530-exon-sc0000424-1491911889:250287..250357Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:250287..250357TCONS_00022530-exon-sc0000424-1510915933:250287..250357Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:250287..250357TCONS_00022530-exon-sc0000424-1575043694:250287..250357Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:250525..250566TCONS_00022530-exon-sc0000424-1491911889:250525..250566Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:250525..250566TCONS_00022530-exon-sc0000424-1510915933:250525..250566Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:250525..250566TCONS_00022530-exon-sc0000424-1575043694:250525..250566Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:250825..250899TCONS_00022530-exon-sc0000424-1491911889:250825..250899Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:250825..250899TCONS_00022530-exon-sc0000424-1510915933:250825..250899Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:250825..250899TCONS_00022530-exon-sc0000424-1575043694:250825..250899Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:251241..251297TCONS_00022530-exon-sc0000424-1491911889:251241..251297Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:251241..251297TCONS_00022530-exon-sc0000424-1510915933:251241..251297Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:251241..251297TCONS_00022530-exon-sc0000424-1575043694:251241..251297Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:251467..251786TCONS_00022530-exon-sc0000424-1491911889:251467..251786Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:251467..251786TCONS_00022530-exon-sc0000424-1510915933:251467..251786Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:251467..251786TCONS_00022530-exon-sc0000424-1575043694:251467..251786Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:252540..252629TCONS_00022530-exon-sc0000424-1491911889:252540..252629Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:252540..252629TCONS_00022530-exon-sc0000424-1510915933:252540..252629Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:252540..252629TCONS_00022530-exon-sc0000424-1575043694:252540..252629Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1491911889:253122..254308TCONS_00022530-exon-sc0000424-1491911889:253122..254308Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1510915933:253122..254308TCONS_00022530-exon-sc0000424-1510915933:253122..254308Clytia hemisphaericaexon
TCONS_00022530-exon-sc0000424-1575043694:253122..254308TCONS_00022530-exon-sc0000424-1575043694:253122..254308Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022530-proteinTCONS_00022530-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:248073..254308 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.9259	19.2566	10.7278	9.95365	9.39253	4.15399	7.71017	9.86607	27.594	22.223	32.3525	39.8218	32.7052	35.1824	28.8899	27.6642	21.0641	27.8575	29.1727	25.8382	22.6693	22.3572	25.5623	25.5748	1.99396	0.00183301	19.0869	18.659	24.8378	22.0686
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR021538Syntaxin-5_N
IPR010989SNARE
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00022530 vs. Swiss-Prot (Human)
Match: STX5 (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 9.848e-90
Identity = 159/282 (56.38%), Postives = 202/282 (71.63%), Query Frame = 2 
Query:  251 MSCRDRTGEFLSAVKSLQSSQLXXXXXXXXXXXXKKVQPSPFTMASRKIGRDINNTFNKLEKLAILAKRKSLFNDKPKEIQELTYIIKQDINHLNQQISDLQQFVNRSDSGNSKNVQAHSHTVVMSLQSKLAYMSKDFKHVLEVRTENMKHQKNRRDQFSQGAVAETLPSTQVASNSLLHRNV--GGNSSQSDTVSLDMEPLLASNNQAQLYEEDDEYVKSRATAMESIEQTIVELGGIFQQLAHLVSEQEEQIKRIDANVEDTEMNVEAAHSELLKYFQNI 1090
            MSCRDRT EFLSA KSLQ+ Q      +      +  Q S FT+ +++IG+D++NTF KLEKL ILAKRKSLF+DK  EI+ELTYIIKQDIN LN+QI+ LQ FV    S + +++Q HS+T+V+SLQSKLA MS DFK VLEVRTEN+K Q++RR+QFS+  V+  LP   +A N L    V  G  S  S  V++DM     S  Q QL +E D Y++SRA  M++IE TIVELG IFQQLAH+V EQEE I+RID NV   +++VEAAHSE+LKYFQ++
Sbjct:   55 MSCRDRTQEFLSACKSLQTRQNGIQTNKPALRAVR--QRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVS-ALP---LAPNHLGGGAVVLGAESHASKDVAIDMMDSRTS-QQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSV 329
The following BLAST results are available for this feature:
BLAST of TCONS_00022530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX59.848e-9056.38Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
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