TCONS_00022530-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022530-protein
Unique NameTCONS_00022530-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022530-protein ID=TCONS_00022530-protein|Name=TCONS_00022530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MNTRRRRTKSGSKEDNKENFNAGYGIPLTNSGKTFTETSQNYNQVIVDPI
DMSCRDRTGEFLSAVKSLQSSQLNGHAGRHGANNGKKVQPSPFTMASRKI
GRDINNTFNKLEKLAILAKRKSLFNDKPKEIQELTYIIKQDINHLNQQIS
DLQQFVNRSDSGNSKNVQAHSHTVVMSLQSKLAYMSKDFKHVLEVRTENM
KHQKNRRDQFSQGAVAETLPSTQVASNSLLHRNVGGNSSQSDTVSLDMEP
LLASNNQAQLYEEDDEYVKSRATAMESIEQTIVELGGIFQQLAHLVSEQE
EQIKRIDANVEDTEMNVEAAHSELLKYFQNISSNSFNSYFTSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012630XLOC_012630Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022530TCONS_00022530Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR021538Syntaxin-5_N
IPR010989SNARE
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 296..323
NoneNo IPR availableGENE3D1.20.5.110coord: 287..330
e-value: 8.6E-8
score: 31.7
NoneNo IPR availableGENE3D1.20.58.70coord: 88..286
e-value: 4.1E-44
score: 150.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..92
NoneNo IPR availableCDDcd15844SNARE_syntaxin5coord: 269..334
e-value: 4.94789E-33
score: 117.999
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 260..327
e-value: 1.6E-16
score: 70.9
IPR000727Target SNARE coiled-coil homology domainPFAMPF05739SNAREcoord: 301..334
e-value: 1.9E-7
score: 30.8
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 265..327
score: 17.743
IPR021538Syntaxin-5, N-terminal, Sly1p-binding domainPFAMPF11416Syntaxin-5_Ncoord: 52..70
e-value: 4.1E-10
score: 38.5
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 90..320

Blast
[Close]
BLAST of TCONS_00022530-protein vs. Swiss-Prot (Human)
Match: STX5 (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 1.942e-99
Identity = 164/287 (57.14%), Postives = 208/287 (72.47%), Query Frame = 0 
Query:   52 MSCRDRTGEFLSAVKSLQSSQLNGHAGRHGANNGKKVQPSPFTMASRKIGRDINNTFNKLEKLAILAKRKSLFNDKPKEIQELTYIIKQDINHLNQQISDLQQFVNRSDSGNSKNVQAHSHTVVMSLQSKLAYMSKDFKHVLEVRTENMKHQKNRRDQFSQGAVAETLPSTQVASNSLLHRNV--GGNSSQSDTVSLDMEPLLASNNQAQLYEEDDEYVKSRATAMESIEQTIVELGGIFQQLAHLVSEQEEQIKRIDANVEDTEMNVEAAHSELLKYFQNISSNSF 336
            MSCRDRT EFLSA KSLQ+ Q NG      A    + Q S FT+ +++IG+D++NTF KLEKL ILAKRKSLF+DK  EI+ELTYIIKQDIN LN+QI+ LQ FV    S + +++Q HS+T+V+SLQSKLA MS DFK VLEVRTEN+K Q++RR+QFS+  V+  LP   +A N L    V  G  S  S  V++DM     S  Q QL +E D Y++SRA  M++IE TIVELG IFQQLAH+V EQEE I+RID NV   +++VEAAHSE+LKYFQ+++SN +
Sbjct:   55 MSCRDRTQEFLSACKSLQTRQ-NGIQTNKPALRAVR-QRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPVS-ALP---LAPNHLGGGAVVLGAESHASKDVAIDMMDSRTS-QQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334
The following BLAST results are available for this feature:
BLAST of TCONS_00022530-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX51.942e-9957.14Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
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