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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022492 ID=TCONS_00022492|Name=TCONS_00022492|organism=Clytia hemisphaerica|type=transcript|length=1037bp
tttaaacaaaaaatcataataattaatagattttaatctcgaattttcaa
aataaaaaaaattactgttAATCGTACATAGTCAAAGAGATATCTTTAGA
GTTGATAAAATCGTGACTGTATCGTTTTCTTGTTGCTGATAGCAACAGAT
TCGCGATAGGCAGCACAAAAGTGCGCGTGTAAAAAAACACGAAATAAATG
TCATTGTTTGCAACCCCTATTTTTGAGCATTCAGCTAAGTTTAAGAGGAG
CCAAGGGATTGTTGTGACCGAATATATAATATAGAGTCCGATTATTTTGT
ATGGTTTTTGTCGGATGAAATAATCGGTTTTTGAATTTCTCAAATCATAC
ACCACTTTGATTACCGCGAAGATAGCCACGAAATGAGGCGCTGCTTCAAG
CCAAAACCACCATGTTACAATATACACCAAATGGTCAAATGGTTTATAAT
ATGCAGCATTTCCTTGAAAGACTATAGGGAAGGAGACAAGAAATACGACT
GTTGCCAACAGACCCATTTGTTTGGTTGACGATGTTTGACGTTTNCAGCA
TTTCCTTGAAAGACTATAGGGAAGGAGACAAGAAATACGACTGTTGCCAA
CAGACCCATTTGTTTGGTTGACGATGTTTGACGTTTGATTACAGACCAGC
CTACAACACATTCTTTGAGCTGGCGGCAAACCTCCAATACAGACAATACG
GTCAAACAGTTCAGAATGCCAGCACATGTTAACCAAATAACAAGCAGCGC
TTTTAATACATGATTTGGAATATCCCAACGCGTGCGCGTCTGAAGTGCAA
ACCAAGCGACTGTCAAGCTGActtggataaaagagctcagtGACAGGAAA
ACGATGTAAAATGATATGCTGTCCTCTGTACGGTTCCAGATGCGAAAACG
TCGATAACACGCGCATGCGCATAGTATCCAAATAATGACAAAAAGAGCAG
ATAAAAAGTTGATTGTGTCTTTTGATAGATCAACATCCATCATGTTGGAG
GAAATTCGAATCAAAAGATTGAAGTTCCCAACCTTCC Run BLAST on NCBI protein sequence of TCONS_00022492-protein >TCONS_00022492-protein ID=TCONS_00022492-protein|Name=TCONS_00022492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MRMRVLSTFSHLEPYRGQHIILHRFPVTELFYPSQLDSRLVCTSDAHALG
YSKSCIKSAACYLVNMCWHSELFDRIVCIGGLPPAQRMCCRLVCNQTSNI
VNQTNGSVGNSRISCLLPYSLSRKCXKRQTSSTKQMGLLATVVFLVSFPI
VFQGNAAYYKPFDHLVYIVTWWFWLEAAPHFVAIFAVIKVVYDLRNSKTD
YFIRQKPYKIIGLYIIYSVTTIPWLLLNLAECSKIGVANNDIYFVFFYTR
TFVLPIANLLLSATRKRYSHDFINSKDISLTMYD Run BLAST on NCBI transcript from alignment at sc0000421:145154..146190 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022492 ID=TCONS_00022492|Name=TCONS_00022492|organism=Clytia hemisphaerica|type=transcript|length=1037bp|location=Sequence derived from alignment at sc0000421:145154..146190 (Clytia hemisphaerica)
GGAAGGTTGGGAACTTCAATCTTTTGATTCGAATTTCCTCCAACATGATG
GATGTTGATCTATCAAAAGACACAATCAACTTTTTATCTGCTCTTTTTGT
CATTATTTGGATACTATGCGCATGCGCGTGTTATCGACGTTTTCGCATCT
GGAACCGTACAGAGGACAGCATATCATTTTACATCGTTTTCCTGTCactg
agctcttttatccaagTCAGCTTGACAGTCGCTTGGTTTGCACTTCAGAC
GCGCACGCGTTGGGATATTCCAAATCATGTATTAAAAGCGCTGCTTGTTA
TTTGGTTAACATGTGCTGGCATTCTGAACTGTTTGACCGTATTGTCTGTA
TTGGAGGTTTGCCGCCAGCTCAAAGAATGTGTTGTAGGCTGGTCTGTAAT
CAAACGTCAAACATCGTCAACCAAACAAATGGGTCTGTTGGCAACAGTCG
TATTTCTTGTCTCCTTCCCTATAGTCTTTCAAGGAAATGCTGNAAACGTC
AAACATCGTCAACCAAACAAATGGGTCTGTTGGCAACAGTCGTATTTCTT
GTCTCCTTCCCTATAGTCTTTCAAGGAAATGCTGCATATTATAAACCATT
TGACCATTTGGTGTATATTGTAACATGGTGGTTTTGGCTTGAAGCAGCGC
CTCATTTCGTGGCTATCTTCGCGGTAATCAAAGTGGTGTATGATTTGAGA
AATTCAAAAACCGATTATTTCATCCGACAAAAACCATACAAAATAATCGG
ACTCTATATTATATATTCGGTCACAACAATCCCTTGGCTCCTCTTAAACT
TAGCTGAATGCTCAAAAATAGGGGTTGCAAACAATGACATTTATTTCGTG
TTTTTTTACACGCGCACTTTTGTGCTGCCTATCGCGAATCTGTTGCTATC
AGCAACAAGAAAACGATACAGTCACGATTTTATCAACTCTAAAGATATCT
CTTTGACTATGTACGATTaacagtaattttttttattttgaaaattcgag
attaaaatctattaattattatgattttttgtttaaa Coding sequence (CDS) from alignment at sc0000421:145154..146190 >TCONS_00022492 ID=TCONS_00022492|Name=TCONS_00022492|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0000421:145154..146190 (Clytia hemisphaerica)
ATGCGCATGCGCGTGTTATCGACGTTTTCGCATCTGGAACCGTACAGAGG
ACAGCATATCATTTTACATCGTTTTCCTGTCactgagctcttttatccaa
gTCAGCTTGACAGTCGCTTGGTTTGCACTTCAGACGCGCACGCGTTGGGA
TATTCCAAATCATGTATTAAAAGCGCTGCTTGTTATTTGGTTAACATGTG
CTGGCATTCTGAACTGTTTGACCGTATTGTCTGTATTGGAGGTTTGCCGC
CAGCTCAAAGAATGTGTTGTAGGCTGGTCTGTAATCAAACGTCAAACATC
GTCAACCAAACAAATGGGTCTGTTGGCAACAGTCGTATTTCTTGTCTCCT
TCCCTATAGTCTTTCAAGGAAATGCTGNAAACGTCAAACATCGTCAACCA
AACAAATGGGTCTGTTGGCAACAGTCGTATTTCTTGTCTCCTTCCCTATA
GTCTTTCAAGGAAATGCTGCATATTATAAACCATTTGACCATTTGGTGTA
TATTGTAACATGGTGGTTTTGGCTTGAAGCAGCGCCTCATTTCGTGGCTA
TCTTCGCGGTAATCAAAGTGGTGTATGATTTGAGAAATTCAAAAACCGAT
TATTTCATCCGACAAAAACCATACAAAATAATCGGACTCTATATTATATA
TTCGGTCACAACAATCCCTTGGCTCCTCTTAAACTTAGCTGAATGCTCAA
AAATAGGGGTTGCAAACAATGACATTTATTTCGTGTTTTTTTACACGCGC
ACTTTTGTGCTGCCTATCGCGAATCTGTTGCTATCAGCAACAAGAAAACG
ATACAGTCACGATTTTATCAACTCTAAAGATATCTCTTTGACTATGTACG
ATTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022492-exon-sc0000421-1491911889:145154..146190 | TCONS_00022492-exon-sc0000421-1491911889:145154..146190 | Clytia hemisphaerica | exon |
| TCONS_00022492-exon-sc0000421-1510915933:145154..146190 | TCONS_00022492-exon-sc0000421-1510915933:145154..146190 | Clytia hemisphaerica | exon |
| TCONS_00022492-exon-sc0000421-1575043694:145154..146190 | TCONS_00022492-exon-sc0000421-1575043694:145154..146190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:145154..146190 . |
Blast
The following BLAST results are available for this feature:
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