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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022483 ID=TCONS_00022483|Name=TCONS_00022483|organism=Clytia hemisphaerica|type=transcript|length=478bp
ATATggcaataatgaccttcatttttaaggaaatatttagtcgcaatttt
gcgattcttgtttgtTTTCAAGTGGTCAACATGAAATCGTTTTCTGTTGT
GGTGCTGGCATGTTTGGTATACAATTTGCAAACTATCGAAGGTGGAGACA
TTGACATGTGTAGGTTTAAAGACACTGGCGATAAATTCTGCTCCTTATTT
GGTCATTGGTTGGAACCAGATAGTAATGTGTGGCAGATCCGATCTACGCC
TATAAGTCCAAACACAGGACCGCAGAATGGTGCTGATCCTACAACTATAA
GTTCTTCTGGTGACAAATTCTATCTTGTAGCTAACGGTTTGCCTAACACA
CAGCATTGTCATTCGAGTAAATCAACTTCAATGAATCCAACAACTGACAC
TAATGTTTGTGTAAGCTTCCTCTACAACATGAACGGGGCCACCATGGGAA
GTTTGTATGTGATTCGGGAACACCCGAC Run BLAST on NCBI protein sequence of TCONS_00022483-protein >TCONS_00022483-protein ID=TCONS_00022483-protein|Name=TCONS_00022483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MAIMTFIFKEIFSRNFAILVCFQVVNMKSFSVVVLACLVYNLQTIEGGDI
DMCRFKDTGDKFCSLFGHWLEPDSNVWQIRSTPISPNTGPQNGADPTTIS
SSGDKFYLVANGLPNTQHCHSSKSTSMNPTTDTNVCVSFLYNMNGATMGS
LYVIREHP Run BLAST on NCBI transcript from alignment at sc0000421:219571..223062- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022483 ID=TCONS_00022483|Name=TCONS_00022483|organism=Clytia hemisphaerica|type=transcript|length=3492bp|location=Sequence derived from alignment at sc0000421:219571..223062- (Clytia hemisphaerica)
ATATGGCAATAATGACCTTCATTTTTAAGGAAATATTTAGTCGCAATTTT
GCGATTCTTGTTTGTTTTCAAGTGGTCAACATGAAATCGTTTTCTGTTGT
GGTGCTGGCATGTTTGGTATACAATTTGCAAACTATCGAAGGTTAGTTGA
GTTTTGTTTTTGTCGACCTGTTCCCAAAATAAAAGAGTGCAATATAAATG
AAGTCCTGCTAGTCCTAGAGCAGTGTGTTTTCTCAACCCGCATGAAACTT
TCATGTGGAGTGTGATCTGATTTCTGGTAAATTTTAAAATCTGTTCAATG
TCTTCTGCTCCCATCTCCTTGTCTACAAGCACAGACTTGTCTGACGCGCG
AAAAAAATTATCCGCCAACAGAACACGAATGCTAATGATGTTAAGATTTC
CATTCTTGCAGGTTTGAACTCGCTTTGAATCTTCTTTTTTTTTCTTTTTT
TTTTTGAGTTTCGAATTTTTGTTTAAAGGTGGAGACATTGACATGTGTAG
GTTTAAAGACACTGGCGATAAATTCTGCTCCTTATTTGGTCATTGGTTGG
AACCAGATAGTAATGTGTGGCAGATCCGATCTACGCCTATAAGTCCAAAC
ACAGGACCGCAGAATGGTGCTGATCCTACAACTATAAGTAAGTTTTGTTT
TAAAGATATTTTTAAGAATCTAAAAAATAGCTTATATCTCTTGACCTTAT
TAAAAGTTTGTTTTCAAAACCAAAATATCGAGCCAGAGGCCCACACCTAC
TGGAAAGATTGGCAAACGCTAAATTGAGCTTTTGGCCTCATGTCAATAAT
ACAGGAAAACATGACGAAGTTAGAAAAAGTAAAAAAATAAAAGTAGATGA
TTAACACGATACGAAATTCCACATTGAGTTTCAAAATGTGCATACACGTT
TTTTTTATAAAAAAAACTATAAGAATTTAAGGCTTCGATGGCCGAAATGT
TAATAACGAGTTAAGAACATTTTAACGCTTCGTGAACTCTAAAACACCTA
ATTTCTTAGGAATATAGACAAAAATACCCCAAAAATGGTGGAAATAAGAA
CATATTAAGAAGATTTTTAGGTTTAAGACTACAAAAGTTAAGAACAACCG
AAAAAGGCTTCAAAAATTTTCGACGTTCTTATAAAAAAACGTGTATGGCT
ATGCTTGTATACATTTTGACCGTCTTTCCATAATCACAACTTCTTTTATC
CTCTCGTTTTAGGTTCTTCTGGTGACAAATTCTATCTTGTAGCTAACGGT
TTGCCTAACACACAGCATTGTCATTCGAGTAAATCAACTTCAATGAATCC
AACAACTGACACTAATGTTTGTGTAAGCTTCCTCTACAACATGAACGGGG
CCACCATGGGAAGTTTGTGTAAGTCGAAATACAATTCTTTTCATTATATT
TGAGACAAAAAAAGGAAATTCCCAACGAAGTGTTGTAACACCAGACGAGT
TGAAAGTGCTCTAACTAAGTCTAGAAGGGAAGAGTTTTAAATCTCACATT
CAATGGTAGACATAAGACCTTAGGATTTCAGGATCCAAAAAATCCCTATG
TACTATTTGAACTTTCTTCAATATTTCAGATAACGGTTTCTAATCCTCTC
TTCAGTTACTTGAAGTATTTACTTGGAAATGAATACAATTAGAAAAAACA
AGCTAGATGCTGAATGGACCTACCTGATGATGAAAGTTGGATCGCAATAC
GAGGAGGGTTGTAGGGGAAAAATAAATAGAAAGTTCTGGTCGCAAAATTC
AGTTTTATTGACAATTGAATCATGCTTGATGGTGAGCATTGTTATCAATA
ATGTTTTGTGTGAAAAAACATAGAAATACAAGGAAAAAATCTAATGAAAA
TCTGCAAAAACGGCGATTTCCGGCATTTTCAACCGAAAAAAAAATTTCTC
AAAAATCGAACTCAGCCATTTTTTGAGCATTGCGAATACGAATCTTTCTG
CAAAAAATCAGAAAAAACTTTTGATGAAAATTCGAGAAAATGTAAAATAA
CCGGTTTTTCCAGCATATTTCCGGCATTTTCGGCCGGAAAAAAATGTTTT
TCTAAAATCGGGCTCCGTCGGTATTGTCATATTGCATCAGTGTGTAAAAT
TTCATAAAAAAATATAAAGTACAGCTCGAGAAATTCAAGAAATACTGTCT
TTCCGGCAAAAATAGGTTGTTCCGGCGATTTTTAAATAGCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGAAAATTGAAACATGCTTGATGGTGGGCATTGCTATTAATAA
TGTTTTTGAATGAAAAAACAACCAATTGTAAGGAAAAAGTCCAATGAAAA
TCCAGAAAAGCGGCGATTTCCGGCATATTTCCGGCATTTTCGGCCGGAAA
AAAAATTTCCTCAAAAATCAAACTCGGCCATGTATTGAACAATATTAATA
CGCATCTTTGAGAAAAAAAATCAGAAAAAACTAAACAGTTTTTCCGGCAT
ATTTCCGGCATTTTCGACCGGAAAAAAATGTTTTTCGAAAATCGGGCTCC
GTAACTTTTTAGGTATTCTCATTTTACATCAGTGTGCAAAATTTCATAAA
AAAATAAAAGTACAGCTCGAGAAATTCAAGAAGTACCGTTTTTCCGGCGA
AAATCGGCTGTTCCGGCGATTTTTAGAAAGTTCCGGCTTCAAAAATCAGT
TTTATTGACAATTGTCGTGGACATTGCTATTAACAATGTTTTTGTGTGAA
AAATACAACCAATTATAAGGAAAAAGTCCGATGAAAATCTGCAAAAACGG
CGATTTCCGGCATATTTCCGGTATTTTCGGCCGGAAAAGATTTTTTCTCA
AAAATCGGACTCGGCCAAGTTTTGGGTATTGCTAATACGCATCTTTGTGC
AAAAAATCAGAAAAAACTAATGATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCATCATTGTGCCAA
AAATCAGAAAAAACTAATGAGCCAATCTCGAGAAAAGCTGGTAACAGACG
GACGAACGAACGAACGAACGGACGAACGGACGGACATCGGTTCATTTATA
GGACCTCCAAGGTAGGTCCAAAAAACAGAAAGCGCGGCTTTTTCAAACGC
TGTAAATTTTCATAGATCAAGTGTTATACATCACACGAAGAAGGTTTACT
TTCTCTGTTTTAAAACTTACAAAGGTACGAGCTAAGATATCCATACAGTG
TGTTTATCCTGTATTTGTAGATGTGATTCGGGAACACCCGAC Coding sequence (CDS) from alignment at sc0000421:219571..223062- >TCONS_00022483 ID=TCONS_00022483|Name=TCONS_00022483|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000421:219571..223062- (Clytia hemisphaerica)
ATGTGATTCGGGAACACCCGGTTCTTCTGGTGACAAATTCTATCTTGTAG
CTAACGGTTTGCCTAACACACAGCATTGTCATTCGAGTAAATCAACTTCA
ATGAATCCAACAACTGACACTAATGTTTGTGTAAGCTTCCTCTACAACAT
GAACGGGGCCACCATGGGAAGTTTGTGTGGAGACATTGACATGTGTAGGT
TTAAAGACACTGGCGATAAATTCTGCTCCTTATTTGGTCATTGGTTGGAA
CCAGATAGTAATGTGTGGCAGATCCGATCTACGCCTATAAGTCCAAACAC
AGGACCGCAGAATGGTGCTGATCCTACAACTATAAATGGCAATAATGACC
TTCATTTTTAAGGAAATATTTAGTCGCAATTTTGCGATTCTTGTTTGTTT
TCAAGTGGTCAACATGAAATCGTTTTCTGTTGTGGTGCTGGCATGTTTGG
TATACAATTTGCAAACTATCGAAGATGTGATTCGGGAACACCCGGTTCTT
CTGGTGACAAATTCTATCTTGTAGCTAACGGTTTGCCTAACACACAGCAT
TGTCATTCGAGTAAATCAACTTCAATGAATCCAACAACTGACACTAATGT
TTGTGTAAGCTTCCTCTACAACATGAACGGGGCCACCATGGGAAGTTTGT
GTGGAGACATTGACATGTGTAGGTTTAAAGACACTGGCGATAAATTCTGC
TCCTTATTTGGTCATTGGTTGGAACCAGATAGTAATGTGTGGCAGATCCG
ATCTACGCCTATAAGTCCAAACACAGGACCGCAGAATGGTGCTGATCCTA
CAACTATAAATGGCAATAATGACCTTCATTTTTAAGGAAATATTTAGTCG
CAATTTTGCGATTCTTGTTTGTTTTCAAGTGGTCAACATGAAATCGTTTT
CTGTTGTGGTGCTGGCATGTTTGGTATACAATTTGCAAACTATCGAAGAT
GTGATTCGGGAACACCCGGTTCTTCTGGTGACAAATTCTATCTTGTAGCT
AACGGTTTGCCTAACACACAGCATTGTCATTCGAGTAAATCAACTTCAAT
GAATCCAACAACTGACACTAATGTTTGTGTAAGCTTCCTCTACAACATGA
ACGGGGCCACCATGGGAAGTTTGTGTGGAGACATTGACATGTGTAGGTTT
AAAGACACTGGCGATAAATTCTGCTCCTTATTTGGTCATTGGTTGGAACC
AGATAGTAATGTGTGGCAGATCCGATCTACGCCTATAAGTCCAAACACAG
GACCGCAGAATGGTGCTGATCCTACAACTATAAATGGCAATAATGACCTT
CATTTTTAAGGAAATATTTAGTCGCAATTTTGCGATTCTTGTTTGTTTTC
AAGTGGTCAACATGAAATCGTTTTCTGTTGTGGTGCTGGCATGTTTGGTA
TACAATTTGCAAACTATCGAAGATGTGATTCGGGAACACCCGGTTCTTCT
GGTGACAAATTCTATCTTGTAGCTAACGGTTTGCCTAACACACAGCATTG
TCATTCGAGTAAATCAACTTCAATGAATCCAACAACTGACACTAATGTTT
GTGTAAGCTTCCTCTACAACATGAACGGGGCCACCATGGGAAGTTTGTGT
GGAGACATTGACATGTGTAGGTTTAAAGACACTGGCGATAAATTCTGCTC
CTTATTTGGTCATTGGTTGGAACCAGATAGTAATGTGTGGCAGATCCGAT
CTACGCCTATAAGTCCAAACACAGGACCGCAGAATGGTGCTGATCCTACA
ACTATAAATGGCAATAATGACCTTCATTTTTAAGGAAATATTTAGTCGCA
ATTTTGCGATTCTTGTTTGTTTTCAAGTGGTCAACATGAAATCGTTTTCT
GTTGTGGTGCTGGCATGTTTGGTATACAATTTGCAAACTATCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022483-exon-sc0000421-1575043694:222922..223062 | TCONS_00022483-exon-sc0000421-1575043694:222922..223062 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1575043694:222426..222584 | TCONS_00022483-exon-sc0000421-1575043694:222426..222584 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1575043694:221695..221850 | TCONS_00022483-exon-sc0000421-1575043694:221695..221850 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1575043694:219571..219592 | TCONS_00022483-exon-sc0000421-1575043694:219571..219592 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1510915933:222922..223062 | TCONS_00022483-exon-sc0000421-1510915933:222922..223062 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1510915933:222426..222584 | TCONS_00022483-exon-sc0000421-1510915933:222426..222584 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1510915933:221695..221850 | TCONS_00022483-exon-sc0000421-1510915933:221695..221850 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1510915933:219571..219592 | TCONS_00022483-exon-sc0000421-1510915933:219571..219592 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1491911889:222922..223062 | TCONS_00022483-exon-sc0000421-1491911889:222922..223062 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1491911889:222426..222584 | TCONS_00022483-exon-sc0000421-1491911889:222426..222584 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1491911889:221695..221850 | TCONS_00022483-exon-sc0000421-1491911889:221695..221850 | Clytia hemisphaerica | exon |
| TCONS_00022483-exon-sc0000421-1491911889:219571..219592 | TCONS_00022483-exon-sc0000421-1491911889:219571..219592 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000421 | supercontig | sc0000421:219571..223062 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000998 | MAM_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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