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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022438 ID=TCONS_00022438|Name=TCONS_00022438|organism=Clytia hemisphaerica|type=transcript|length=2728bp
CGATCCCGCATCTCCCGCACTAGGCCTTTCAGGGGTCACTCATCCCGCCT
CTACAGGATATCTATGCCGTCGGCTCTTTGCTGCCATTTTATCTATTTCA
GTATCGGCTACCGGCAATTTATCTTCAGCTAGTCCCGCCTGCTAGATCTC
CTTAAATTGATCTCACTCCTATTTCCTACCTTTTGTACCGCCTGATCAGA
TTGAGaatgaatttattgacactCAAAATGATCCtacaaaatatctttaa
aattattACAATCCTTCATTTGGCCACAACTGTGTTGTGTGGACCGAAAA
ACAAGAAAGCAAAGATCGAGGCACCCTTGATTGATGATGAACAAGAACGT
CAATCCCACTCCAATGATGGATCCTCCGACCCAGGCAGTTTTTCTCGAGA
GCAATGGAACACTGTTCAGAGAGAGGAACTATCAATGTATGCTCAAAGTC
ATGGTCTCAACCCAACCTTTTTCTCCGACAACACCCTCAGGTCCGTGCTG
TACGACGTGTACCACCCCCGTTCAACTACAACCAACCAAAATGACTTACC
TAATTCATCCTCTGTGTCACCAGAACGCACCCAACAAGATAATGGTCCAC
CAAATACCTCGTCTACAAGCACCTTGCCAGCAGCTACTGCAACAGCCACA
GGAGGTCATCAACCAAATATTCCAGCTACCGCAATTGTGAGAGGAAACAA
CTCCTCGAACTTAACTCAACAAGAAGAACTATTGAACTTAATTGAAGATA
GACTTGTATCAACCATGTCTCGGTTCCTTACCAACAACATTCGTTCTTCC
CCAGCACTTCCAACTTCAACCAATTTCGCTCAACCCACACAACTTAACCT
GCCATCTTTATCTCGGCCAGTCCAAAACAACGTATCGGTACCGGCAAATA
TTTCACcttttcaacaacaacaagacgTTCAAGATGGCCGCACACAGGAT
CTTTCGAACCTTCAACTTCCCCCAGTCCCAGCGAACGTTATCAACAGAAT
CAGACGCGGTGAGTTCGTTAACTTTGATTCTCTACTTCCTCAGAACGTTG
GGCGATCCACTAACACCCATATTTCTTTAAACATCGACGGGGATAGTATT
TCTTTGGCAAGTAATAACGACTCATCCTCTACCACTAAAGATAATTCAAA
ATACAAAGCCAAAGTCACCGATTTCCTTACCTGGTCTCTTGCATggacat
tttttttccaaatcatGGTACAGTTTAACTCCCACTTGACGGAACAACTT
TTACAATACCAACTTTATATTACCAACATGGCTAACCAGTACATTTTTTC
TGCTTGGTACAATTATGACAAAGCCTTCAGACAATCTCTTGCGAACAACC
CACATAAGGTTAACTGGAGCTCCTCAGACGGCTATATTTTTAATCTTTAT
GTTAGGGATAGAAATTTAAAATCTAAATGTTTTACCTGCGGTTCTAGTAA
CCACCTCTCCCCCTCTTGCCCTTTCGCGACAGGTAAGGGTCCTGGTTCTA
GCAGTGGTAAGTTGCAACCGTTTGGCAGTGTTCAGCAGAGTTTTCCTAGG
CTACGGGCCCCTGGGCTCCCACCCACCCCACCAGGCTCTTTCGGATCAAA
TTCCCCCAGCGTCTCTGCTAATTTTCAGGCTCCCTCCCACTATGGTTCCA
GACCACCCTTTCCTGCCCCCCAGCGTACCCAGACTGCCAGCCAGAGCGGC
CAGGTATGTCGAAGATGGAACCAGGGACAGTGTACCAGATACAATAACTG
CAAATTTCTCCATGTCTGTATCTTCTGTGGGGCCAGTAACCACCCAGGAT
ACCAGTGCCACTGATTCTTTCTTACTCGATTCTCTTCCTTTGCAGTTCTC
TTTGCCGTCTTCTGTTGCTTCACCCATTAGGGTCTCTAATCTTGAGTTTC
TTCTTTCGGGATACCCCCCTGAAATTGTTGAGTTTCTGATCCAGGGTTTT
TCTCATGGGTTTCGTTTGGGTTTTGGTAATAGTCCTCTATCTCACACTGG
GAGGAACAATTCCTCCGCCACGTTGGTTAGCGACAAGGTTTCAGCATCCA
TTTTGAAAGAACTAGAACGTAGTCACACAGCAGGTCCGTTTTCCGATCCA
CCTCTTCCCAACCTTCACTGTTCTCCGCTTGGTTCTGCCCTTAAAAATGA
TGGTTCTTCTCGTATTATTCTTGATTTATGTCAACCTGATGGTAGTTCTG
TGAATGATGGGATCCCTATTGACTCGTGCCATGTTAAGTACTCTTCTTTC
GATGATGCTGTTGATTTAGTACGTCTTGTGGGTAGGGGTTGTTTCATGGG
AAAGATTGACATCAGACACGCTTTTAGACTTTGCCCTGTTCATCCCGACG
ATTGGCATTTACTTGGTTACTACTGGAGATCTCGCTGGTATGTAGACTTG
AGGTTACCTTTCGGACTTAGATCTTCTCCCTTCATCTTCACCACTTTCTC
TGATGCACTGCAATGGATTCTGGTTGTTAAGTATCACGTCACTGCCCTTG
TACATTACCTTGATGATTTCTTTGTTGTTGGTAGAACTAAGGAAGAATGT
CAGTACCGCATGGATCTCATAGTTCAGGTCTTTGAGTTTCTTGGTGTTCC
TATTGCAACGGACAAGTTTGAAGGCCCATCTCAGAAGATTGTTTTCCTAG
GGATTGAAATTGATTCTGTCGACCTTACTATTCGTTTACCTGATGACAAG
AAGAATCGTCTTTCTAGTACTATTGAAT Run BLAST on NCBI protein sequence of TCONS_00022438-protein >TCONS_00022438-protein ID=TCONS_00022438-protein|Name=TCONS_00022438-protein|organism=Clytia hemisphaerica|type=polypeptide|length=535bp
MNLLTLKMILQNIFKIITILHLATTVLCGPKNKKAKIEAPLIDDEQERQS
HSNDGSSDPGSFSREQWNTVQREELSMYAQSHGLNPTFFSDNTLRSVLYD
VYHPRSTTTNQNDLPNSSSVSPERTQQDNGPPNTSSTSTLPAATATATGG
HQPNIPATAIVRGNNSSNLTQQEELLNLIEDRLVSTMSRFLTNNIRSSPA
LPTSTNFAQPTQLNLPSLSRPVQNNVSVPANISPFQQQQDVQDGRTQDLS
NLQLPPVPANVINRIRRGEFVNFDSLLPQNVGRSTNTHISLNIDGDSISL
ASNNDSSSTTKDNSKYKAKVTDFLTWSLAWTFFFQIMVQFNSHLTEQLLQ
YQLYITNMANQYIFSAWYNYDKAFRQSLANNPHKVNWSSSDGYIFNLYVR
DRNLKSKCFTCGSSNHLSPSCPFATGKGPGSSSGKLQPFGSVQQSFPRLR
APGLPPTPPGSFGSNSPSVSANFQAPSHYGSRPPFPAPQRTQTASQSGQV
CRRWNQGQCTRYNNCKFLHVCIFCGASNHPGYQCH Run BLAST on NCBI transcript from alignment at sc0000417:7076..9803 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022438 ID=TCONS_00022438|Name=TCONS_00022438|organism=Clytia hemisphaerica|type=transcript|length=2728bp|location=Sequence derived from alignment at sc0000417:7076..9803 (Clytia hemisphaerica)
ATTCAATAGTACTAGAAAGACGATTCTTCTTGTCATCAGGTAAACGAATA
GTAAGGTCGACAGAATCAATTTCAATCCCTAGGAAAACAATCTTCTGAGA
TGGGCCTTCAAACTTGTCCGTTGCAATAGGAACACCAAGAAACTCAAAGA
CCTGAACTATGAGATCCATGCGGTACTGACATTCTTCCTTAGTTCTACCA
ACAACAAAGAAATCATCAAGGTAATGTACAAGGGCAGTGACGTGATACTT
AACAACCAGAATCCATTGCAGTGCATCAGAGAAAGTGGTGAAGATGAAGG
GAGAAGATCTAAGTCCGAAAGGTAACCTCAAGTCTACATACCAGCGAGAT
CTCCAGTAGTAACCAAGTAAATGCCAATCGTCGGGATGAACAGGGCAAAG
TCTAAAAGCGTGTCTGATGTCAATCTTTCCCATGAAACAACCCCTACCCA
CAAGACGTACTAAATCAACAGCATCATCGAAAGAAGAGTACTTAACATGG
CACGAGTCAATAGGGATCCCATCATTCACAGAACTACCATCAGGTTGACA
TAAATCAAGAATAATACGAGAAGAACCATCATTTTTAAGGGCAGAACCAA
GCGGAGAACAGTGAAGGTTGGGAAGAGGTGGATCGGAAAACGGACCTGCT
GTGTGACTACGTTCTAGTTCTTTCAAAATGGATGCTGAAACCTTGTCGCT
AACCAACGTGGCGGAGGAATTGTTCCTCCCAGTGTGAGATAGAGGACTAT
TACCAAAACCCAAACGAAACCCATGAGAAAAACCCTGGATCAGAAACTCA
ACAATTTCAGGGGGGTATCCCGAAAGAAGAAACTCAAGATTAGAGACCCT
AATGGGTGAAGCAACAGAAGACGGCAAAGAGAACTGCAAAGGAAGAGAAT
CGAGTAAGAAAGAATCAGTGGCACTGGTATCCTGGGTGGTTACTGGCCCC
ACAGAAGATACAGACATGGAGAAATTTGCAGTTATTGTATCTGGTACACT
GTCCCTGGTTCCATCTTCGACATACCTGGCCGCTCTGGCTGGCAGTCTGG
GTACGCTGGGGGGCAGGAAAGGGTGGTCTGGAACCATAGTGGGAGGGAGC
CTGAAAATTAGCAGAGACGCTGGGGGAATTTGATCCGAAAGAGCCTGGTG
GGGTGGGTGGGAGCCCAGGGGCCCGTAGCCTAGGAAAACTCTGCTGAACA
CTGCCAAACGGTTGCAACTTACCACTGCTAGAACCAGGACCCTTACCTGT
CGCGAAAGGGCAAGAGGGGGAGAGGTGGTTACTAGAACCGCAGGTAAAAC
ATTTAGATTTTAAATTTCTATCCCTAACATAAAGATTAAAAATATAGCCG
TCTGAGGAGCTCCAGTTAACCTTATGTGGGTTGTTCGCAAGAGATTGTCT
GAAGGCTTTGTCATAATTGTACCAAGCAGAAAAAATGTACTGGTTAGCCA
TGTTGGTAATATAAAGTTGGTATTGTAAAAGTTGTTCCGTCAAGTGGGAG
TTAAACTGTACCatgatttggaaaaaaaatgtccATGCAAGAGACCAGGT
AAGGAAATCGGTGACTTTGGCTTTGTATTTTGAATTATCTTTAGTGGTAG
AGGATGAGTCGTTATTACTTGCCAAAGAAATACTATCCCCGTCGATGTTT
AAAGAAATATGGGTGTTAGTGGATCGCCCAACGTTCTGAGGAAGTAGAGA
ATCAAAGTTAACGAACTCACCGCGTCTGATTCTGTTGATAACGTTCGCTG
GGACTGGGGGAAGTTGAAGGTTCGAAAGATCCTGTGTGCGGCCATCTTGA
AcgtcttgttgttgttgaaaagGTGAAATATTTGCCGGTACCGATACGTT
GTTTTGGACTGGCCGAGATAAAGATGGCAGGTTAAGTTGTGTGGGTTGAG
CGAAATTGGTTGAAGTTGGAAGTGCTGGGGAAGAACGAATGTTGTTGGTA
AGGAACCGAGACATGGTTGATACAAGTCTATCTTCAATTAAGTTCAATAG
TTCTTCTTGTTGAGTTAAGTTCGAGGAGTTGTTTCCTCTCACAATTGCGG
TAGCTGGAATATTTGGTTGATGACCTCCTGTGGCTGTTGCAGTAGCTGCT
GGCAAGGTGCTTGTAGACGAGGTATTTGGTGGACCATTATCTTGTTGGGT
GCGTTCTGGTGACACAGAGGATGAATTAGGTAAGTCATTTTGGTTGGTTG
TAGTTGAACGGGGGTGGTACACGTCGTACAGCACGGACCTGAGGGTGTTG
TCGGAGAAAAAGGTTGGGTTGAGACCATGACTTTGAGCATACATTGATAG
TTCCTCTCTCTGAACAGTGTTCCATTGCTCTCGAGAAAAACTGCCTGGGT
CGGAGGATCCATCATTGGAGTGGGATTGACGTTCTTGTTCATCATCAATC
AAGGGTGCCTCGATCTTTGCTTTCTTGTTTTTCGGTCCACACAACACAGT
TGTGGCCAAATGAAGGATTGTaataattttaaagatattttgtaGGATCA
TTTTGagtgtcaataaattcattCTCAATCTGATCAGGCGGTACAAAAGG
TAGGAAATAGGAGTGAGATCAATTTAAGGAGATCTAGCAGGCGGGACTAG
CTGAAGATAAATTGCCGGTAGCCGATACTGAAATAGATAAAATGGCAGCA
AAGAGCCGACGGCATAGATATCCTGTAGAGGCGGGATGAGTGACCCCTGA
AAGGCCTAGTGCGGGAGATGCGGGATCG Coding sequence (CDS) from alignment at sc0000417:7076..9803 >TCONS_00022438 ID=TCONS_00022438|Name=TCONS_00022438|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000417:7076..9803 (Clytia hemisphaerica)
TCAGTGGCACTGGTATCCTGGGTGGTTACTGGCCCCACAGAAGATACAGA
CATGGAGAAATTTGCAGTTATTGTATCTGGTACACTGTCCCTGGTTCCAT
CTTCGACATACCTGGCCGCTCTGGCTGGCAGTCTGGGTACGCTGGGGGGC
AGGAAAGGGTGGTCTGGAACCATAGTGGGAGGGAGCCTGAAAATTAGCAG
AGACGCTGGGGGAATTTGATCCGAAAGAGCCTGGTGGGGTGGGTGGGAGC
CCAGGGGCCCGTAGCCTAGGAAAACTCTGCTGAACACTGCCAAACGGTTG
CAACTTACCACTGCTAGAACCAGGACCCTTACCTGTCGCGAAAGGGCAAG
AGGGGGAGAGGTGGTTACTAGAACCGCAGGTAAAACATTTAGATTTTAAA
TTTCTATCCCTAACATAAAGATTAAAAATATAGCCGTCTGAGGAGCTCCA
GTTAACCTTATGTGGGTTGTTCGCAAGAGATTGTCTGAAGGCTTTGTCAT
AATTGTACCAAGCAGAAAAAATGTACTGGTTAGCCATGTTGGTAATATAA
AGTTGGTATTGTAAAAGTTGTTCCGTCAAGTGGGAGTTAAACTGTACCat
gatttggaaaaaaaatgtccATGCAAGAGACCAGGTAAGGAAATCGGTGA
CTTTGGCTTTGTATTTTGAATTATCTTTAGTGGTAGAGGATGAGTCGTTA
TTACTTGCCAAAGAAATACTATCCCCGTCGATGTTTAAAGAAATATGGGT
GTTAGTGGATCGCCCAACGTTCTGAGGAAGTAGAGAATCAAAGTTAACGA
ACTCACCGCGTCTGATTCTGTTGATAACGTTCGCTGGGACTGGGGGAAGT
TGAAGGTTCGAAAGATCCTGTGTGCGGCCATCTTGAAcgtcttgttgttg
ttgaaaagGTGAAATATTTGCCGGTACCGATACGTTGTTTTGGACTGGCC
GAGATAAAGATGGCAGGTTAAGTTGTGTGGGTTGAGCGAAATTGGTTGAA
GTTGGAAGTGCTGGGGAAGAACGAATGTTGTTGGTAAGGAACCGAGACAT
GGTTGATACAAGTCTATCTTCAATTAAGTTCAATAGTTCTTCTTGTTGAG
TTAAGTTCGAGGAGTTGTTTCCTCTCACAATTGCGGTAGCTGGAATATTT
GGTTGATGACCTCCTGTGGCTGTTGCAGTAGCTGCTGGCAAGGTGCTTGT
AGACGAGGTATTTGGTGGACCATTATCTTGTTGGGTGCGTTCTGGTGACA
CAGAGGATGAATTAGGTAAGTCATTTTGGTTGGTTGTAGTTGAACGGGGG
TGGTACACGTCGTACAGCACGGACCTGAGGGTGTTGTCGGAGAAAAAGGT
TGGGTTGAGACCATGACTTTGAGCATACATTGATAGTTCCTCTCTCTGAA
CAGTGTTCCATTGCTCTCGAGAAAAACTGCCTGGGTCGGAGGATCCATCA
TTGGAGTGGGATTGACGTTCTTGTTCATCATCAATCAAGGGTGCCTCGAT
CTTTGCTTTCTTGTTTTTCGGTCCACACAACACAGTTGTGGCCAAATGAA
GGATTGTaataattttaaagatattttgtaGGATCATTTTGagtgtcaat
aaattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022438-exon-sc0000417-1491911889:7076..9803 | TCONS_00022438-exon-sc0000417-1491911889:7076..9803 | Clytia hemisphaerica | exon |
| TCONS_00022438-exon-sc0000417-1510915933:7076..9803 | TCONS_00022438-exon-sc0000417-1510915933:7076..9803 | Clytia hemisphaerica | exon |
| TCONS_00022438-exon-sc0000417-1575043694:7076..9803 | TCONS_00022438-exon-sc0000417-1575043694:7076..9803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417 | supercontig | sc0000417:7076..9803 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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