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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022428 ID=TCONS_00022428|Name=TCONS_00022428|organism=Clytia hemisphaerica|type=transcript|length=2920bp
ATTGAGATTTATAATACGAATTTTACTTTTGATGTTTTGGACTATAATat
aattaaaattaataaaatttaaaatatacaTGGAGCTTTAATGCATTGAC
GCAGTATTTACGAATAAAATTAAAGTATTCTACGATGCCATACACatgtt
gcaaaattatatcaatgcagtccaaacatgtgattactcggaaaagttca
cgtgattttattcccatgttacttgctttacaatttacagctgataactt
tattagtgtcaatcaattcgaaccaatcagaagtaaatgtcatgtaacaa
gcacataaaaatttcgagtaaaagcgtgatttgtcttcagactttaattt
gcAACATGTGTATTGATAACGAGAGTAGCAcgacaggaaaaaaataatct
aaagTCTTCCTTAACCAATCTTCTGATATTATAAAGAAGAAGTCAAGCTA
ATTACCAATGAGATATTGGGCTGGCTAGAGTTTGTGAGAACGTTTGTACA
CGCCTGTTTGGTTTGAAGGTTTGATAAACTATTACGCAATTCGATCTTTG
ACTGGCTAGAATTAGCATATAGATAGAATTTAAATCATACTAGATGTTTT
TTTCAGGAAACcttatcaaaaaaattgttataatatTATAATATTGGGAT
AAATTTACTAAAAATGTGTCATATTTTTCTATGTAAGATAAAAATGTTCa
catttttctaattcattTCTTCAAAGTATAGCAAAGTCAATTCATATTTT
TGCAGCGTTATAAATATCGCTTTAAATCCCCATATTCAAGTTTTTTCTGT
CTAAGTATAAGATGCTCAATTGCACATCTACAAGGGACTGTCCAACATAA
CTTTGGTTTAGCTCAATAGTTAACAGTTaatactttaatttttaaacacc
attTTATTCTCCGCTATTGAAAATAAGGGATCGAGTTGAACTCTTCATTG
TCTGTAGCCCTCTTCTGGTCTTGGAAGAAGGGGATGGTAACCGTCTCCCT
CTTGGAGGCATCTGATGATTCCTGGAGGTTAGCATCCATGAAGTAGGTAG
CATCATCATCATTAAGGGTGCTCTGGAAGAATGGGATATCTTTTTTGCTC
GAAAAGTAGGGAATAGAGGCTGATGTGGATCTCTTGCTTGCAAAATATGG
GATATTTTCTTCCGATGTAGATTTTTTCTTTGCGAAATATGGTATCTCCT
CTGCGCTTTTCTTGCTTGCAAAATAAGGAATCGAATCCTTTTTGTTAGCA
AAATATGGAATCAGATTCTTTTTGGAGAAATAGGGAATTTCCTCTGATGC
CGTTCTTTTGCTGGCGAAGTAAGGAATTGCAGCATCCCTCCGATTTGCAA
AGTAAGGTATGCTGTCTTTTTTATTTGCAAAGTACGGAATCTCGGCTGAT
CTTCGGTTGGCGAAGTATGGAATTTCGGCGGATTTTTTACTCGCGAAATA
TGGAATTTCAGCGACATTTTTCTTGCTAGCAAAGTAGGGAATAGcgtttt
ttttgtttgcaaaaTAAGGAATCGCAGCAGATTTCTTGTTGGCAAAGTAC
GGTATTTCTTCGTCGCTGGCGGATTTTTTATTTGCGAAAAACGGTATCTC
CTCTGCGCTTTTCTTGCTTGTAAAATAAGGGATGGAATCTTTTTTGGAGA
AGTAGGGAATTTCCTCTGATGTCGTTCTTTTGCTGGCGAAGTAAGGAATC
GAATTCTTTTTGGAGAAATAGGGAATTTCTGACTTTTTGTTCGCAAAATA
CGGGATACTGTCCTTTTTATTTGCAAAGTAAGGGATAGAATCTTCTTTAG
TTGCTCGTCTTGCCAAATGGAATGGGAGCTCCTTCCTACTGTAGTATGGG
ATGGTAGCACTGCGTTGAAAGTAAGGTATGGTCTCCCGCTTATGGTAGAA
TGGGATGGTGTCTCGTTTGGCGTAATACGGGATGGACCGGCGTTGGAAAT
ACGGGATAGCTGCATTTCTTACGTAATATGGGATATCACGTTTGCTGAAA
TACGGAATGTCCTTTTTGGAAGCAAAATATGGAATTTTATCACGTCTTGA
AGCAAAATATGGAATTTCTTCGatacttctttgaaaatatgggatagtgt
ttttcttggaaaaatacGGCATCGCTGCGCTGCGTTGGAAGTAAGGAATG
GTGCTCTTCTTGGAAAAATATGGAATGCTTCTTCGTTTATGAAAGAAAGG
GATATCAGCAGCCTCACGACTATGGAAATATGGAACATCGGATTTCTTGT
GGAGTAACGGCATGGATTTTTTTGAGGAGAAAAATGGGATCCTGGAAGAT
ACTTCTTTGCGTGCTTCCTTGATCAGGGCGGTTGCCAGACGTCGTTTAGC
TTCATCTAGGGTGATGCCTGCTCCTTCCGCACTATTGCTAGAAGCCTTCT
CATCTTTTGCAGCAGCAGCCTCCTTTTTGGTAGCTTCCacttcgattgat
tttttttctttgctgcCTTCGGCGTCAACTGACTTCTTTTCTTTTGCTAG
AGtgatcaaacttttcaaacttcTCTTGATCTCACTTTCAATGTCCTTTT
TGTTCAACTCTTCCAGAGCTTTTGCATCACTTGTGGTATCGACTGAATAT
ACAACGCATGCGCATATCaccaataaaaataacaatttgaCTGTGATAAG
CGATACCATAATGCTCTAATACGATGCCTTTCAAGNTTAACTGTGATAAA
CGATACCATAATGCTCTACGCACGACGATGCTACCAAACCACAAGAAAAG
TTTTAAACCCAATGTCTATCGAAGTCTTTTTTTCCACGTCGGGCCCAATT
TACAGTTTTGGTCCCAGAGCTTTTACTTCAGAACGCGACTTGACCAAATT
AATTTTGGCTCAAGATTAATTACTTTTATCCCCTTCAAATGCTCTTTTTA
TTgaacttcaaagaaaaaaa Run BLAST on NCBI transcript from alignment at sc0000417:88276..91195- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022428 ID=TCONS_00022428|Name=TCONS_00022428|organism=Clytia hemisphaerica|type=transcript|length=2920bp|location=Sequence derived from alignment at sc0000417:88276..91195- (Clytia hemisphaerica)
ATTGAGATTTATAATACGAATTTTACTTTTGATGTTTTGGACTATAATAT
AATTAAAATTAATAAAATTTAAAATATACATGGAGCTTTAATGCATTGAC
GCAGTATTTACGAATAAAATTAAAGTATTCTACGATGCCATACACATGTT
GCAAAATTATATCAATGCAGTCCAAACATGTGATTACTCGGAAAAGTTCA
CGTGATTTTATTCCCATGTTACTTGCTTTACAATTTACAGCTGATAACTT
TATTAGTGTCAATCAATTCGAACCAATCAGAAGTAAATGTCATGTAACAA
GCACATAAAAATTTCGAGTAAAAGCGTGATTTGTCTTCAGACTTTAATTT
GCAACATGTGTATTGATAACGAGAGTAGCACGACAGGAAAAAAATAATCT
AAAGTCTTCCTTAACCAATCTTCTGATATTATAAAGAAGAAGTCAAGCTA
ATTACCAATGAGATATTGGGCTGGCTAGAGTTTGTGAGAACGTTTGTACA
CGCCTGTTTGGTTTGAAGGTTTGATAAACTATTACGCAATTCGATCTTTG
ACTGGCTAGAATTAGCATATAGATAGAATTTAAATCATACTAGATGTTTT
TTTCAGGAAACCTTATCAAAAAAATTGTTATAATATTATAATATTGGGAT
AAATTTACTAAAAATGTGTCATATTTTTCTATGTAAGATAAAAATGTTCA
CATTTTTCTAATTCATTTCTTCAAAGTATAGCAAAGTCAATTCATATTTT
TGCAGCGTTATAAATATCGCTTTAAATCCCCATATTCAAGTTTTTTCTGT
CTAAGTATAAGATGCTCAATTGCACATCTACAAGGGACTGTCCAACATAA
CTTTGGTTTAGCTCAATAGTTAACAGTTAATACTTTAATTTTTAAACACC
ATTTTATTCTCCGCTATTGAAAATAAGGGATCGAGTTGAACTCTTCATTG
TCTGTAGCCCTCTTCTGGTCTTGGAAGAAGGGGATGGTAACCGTCTCCCT
CTTGGAGGCATCTGATGATTCCTGGAGGTTAGCATCCATGAAGTAGGTAG
CATCATCATCATTAAGGGTGCTCTGGAAGAATGGGATATCTTTTTTGCTC
GAAAAGTAGGGAATAGAGGCTGATGTGGATCTCTTGCTTGCAAAATATGG
GATATTTTCTTCCGATGTAGATTTTTTCTTTGCGAAATATGGTATCTCCT
CTGCGCTTTTCTTGCTTGCAAAATAAGGAATCGAATCCTTTTTGTTAGCA
AAATATGGAATCAGATTCTTTTTGGAGAAATAGGGAATTTCCTCTGATGC
CGTTCTTTTGCTGGCGAAGTAAGGAATTGCAGCATCCCTCCGATTTGCAA
AGTAAGGTATGCTGTCTTTTTTATTTGCAAAGTACGGAATCTCGGCTGAT
CTTCGGTTGGCGAAGTATGGAATTTCGGCGGATTTTTTACTCGCGAAATA
TGGAATTTCAGCGACATTTTTCTTGCTAGCAAAGTAGGGAATAGCGTTTT
TTTTGTTTGCAAAATAAGGAATCGCAGCAGATTTCTTGTTGGCAAAGTAC
GGTATTTCTTCGTCGCTGGCGGATTTTTTATTTGCGAAAAACGGTATCTC
CTCTGCGCTTTTCTTGCTTGTAAAATAAGGGATGGAATCTTTTTTGGAGA
AGTAGGGAATTTCCTCTGATGTCGTTCTTTTGCTGGCGAAGTAAGGAATC
GAATTCTTTTTGGAGAAATAGGGAATTTCTGACTTTTTGTTCGCAAAATA
CGGGATACTGTCCTTTTTATTTGCAAAGTAAGGGATAGAATCTTCTTTAG
TTGCTCGTCTTGCCAAATGGAATGGGAGCTCCTTCCTACTGTAGTATGGG
ATGGTAGCACTGCGTTGAAAGTAAGGTATGGTCTCCCGCTTATGGTAGAA
TGGGATGGTGTCTCGTTTGGCGTAATACGGGATGGACCGGCGTTGGAAAT
ACGGGATAGCTGCATTTCTTACGTAATATGGGATATCACGTTTGCTGAAA
TACGGAATGTCCTTTTTGGAAGCAAAATATGGAATTTTATCACGTCTTGA
AGCAAAATATGGAATTTCTTCGATACTTCTTTGAAAATATGGGATAGTGT
TTTTCTTGGAAAAATACGGCATCGCTGCGCTGCGTTGGAAGTAAGGAATG
GTGCTCTTCTTGGAAAAATATGGAATGCTTCTTCGTTTATGAAAGAAAGG
GATATCAGCAGCCTCACGACTATGGAAATATGGAACATCGGATTTCTTGT
GGAGTAACGGCATGGATTTTTTTGAGGAGAAAAATGGGATCCTGGAAGAT
ACTTCTTTGCGTGCTTCCTTGATCAGGGCGGTTGCCAGACGTCGTTTAGC
TTCATCTAGGGTGATGCCTGCTCCTTCCGCACTATTGCTAGAAGCCTTCT
CATCTTTTGCAGCAGCAGCCTCCTTTTTGGTAGCTTCCACTTCGATTGAT
TTTTTTTCTTTGCTGCCTTCGGCGTCAACTGACTTCTTTTCTTTTGCTAG
AGTGATCAAACTTTTCAAACTTCTCTTGATCTCACTTTCAATGTCCTTTT
TGTTCAACTCTTCCAGAGCTTTTGCATCACTTGTGGTATCGACTGAATAT
ACAACGCATGCGCATATCACCAATAAAAATAACAATTTGACTGTGATAAG
CGATACCATAATGCTCTAATACGATGCCTTTCAAGNTTAACTGTGATAAA
CGATACCATAATGCTCTACGCACGACGATGCTACCAAACCACAAGAAAAG
TTTTAAACCCAATGTCTATCGAAGTCTTTTTTTCCACGTCGGGCCCAATT
TACAGTTTTGGTCCCAGAGCTTTTACTTCAGAACGCGACTTGACCAAATT
AATTTTGGCTCAAGATTAATTACTTTTATCCCCTTCAAATGCTCTTTTTA
TTGAACTTCAAAGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022428-exon-sc0000417-1575043694:88276..91195 | TCONS_00022428-exon-sc0000417-1575043694:88276..91195 | Clytia hemisphaerica | exon |
| TCONS_00022428-exon-sc0000417-1510915933:88276..91195 | TCONS_00022428-exon-sc0000417-1510915933:88276..91195 | Clytia hemisphaerica | exon |
| TCONS_00022428-exon-sc0000417-1491911889:88276..91195 | TCONS_00022428-exon-sc0000417-1491911889:88276..91195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417 | supercontig | sc0000417:88276..91195 - |
Blast
The following BLAST results are available for this feature:
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