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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022413 ID=TCONS_00022413|Name=TCONS_00022413|organism=Clytia hemisphaerica|type=transcript|length=3181bp
TTacttagcccaataaggtcacaatcatttaacaaaagaattaacaGCAA
AATTATTACGTAaacgtgaaaatgttttttttcgcgcgtgaatacgtgaa
ttggcaaaaatctgcacgtgaatacgtgaattgagggttgactggggggc
ctccttctaagaaaagaaatttgggtgttttcacctaaattagtTATTCT
CCGTATAGACTAAAatctattttataattttaggaGTTTAAATCGATGGA
ATCACTAAATTTCAGCTCTTAAAATTCCAGATTGTAAGCTAAAATAGGTC
TGTAAATATCAATCGttttccaaaactaaaaatttcgtaactgagaaaaa
ataccgtgcaaacatacccttataaagagatttctatccacgcatcagat
ttcgagaaactgtttttacgaccaataatcacttttaaccAAGGGAATCT
GAATAAATGATGAAGTAGCCAAAGTGAGATAttattctatctgataacaG
TTCTGGCCAGTTCACTGATTAAAGTAATGTCATAACAATTATTTGACGAG
AAAACCTCAATataatgtttcaatattttaggAAAAAAACTAATAACAAT
GGTAATCTTATGGTGGCTAATATTTCTTcttttcgaccaatcaaatgcTG
GTTTGACATTCTACCAATTTGGATTTTTCTCTCTttgtcaaaataacaaa
attggaAACCTTACATTAAGAGAAATAGAAGATGCAAGAGCATATAGCCA
AGCTTTGGAAGGCGTAATCAAAGAATCTATAAATTCAAACATCGAACAAC
GACTAGCGGATTTCCCAGACACAAATATTCATGGATCAATTAAATATCAA
CTGTACGACGTTTGTGATGATTTTGAGAAACTGACATCCTTAGTTATCGA
GATTCTAATAGATGAAAAATATGGAGTAATGAGtccaacaaaagaaattt
tcgagCCTTTGGTATTTGTGGTCTACACTCATCTACCGGCccgaatgacg
tcatttgttcGAAATTCTTTTTCGTTCACCAAGACATATATTCACTACCT
TGATTTTGCTGAACTACCCGATGGAACACTTTCCACATCGAAGTTCAACG
TATATGCCAAAAGCCtgttggaaatttcaaacatCTTAAATGTACAAGAT
TTGTTCTTCATCTCGATCAGCGAATCAACTGACAGAGGTTTATACCGCAG
ATACTACAATATGAGCATCACCACGTTTATCGAGGAACAAAAGTGTATTC
AGTTCAGACAGTACTCACCAAAAGAACTAGAGAAAGACCCTTTCAAACAT
GATTTAGTTACTGGTCATTTAAACCCAGCGTTTGTTTTATTCAGCAGTTA
TAACCCAACCCAACTTGCCTTGTCATCATTAAAAGAACTTTACAATGAAA
CTACTAATCTCACTATCTTTACTCACGATATAGAAGCTTCGTATTCATGG
CATTATCAAATGCCTTACCCAGAATCCTTTCCCGAATATTTTGTGGACAT
CAGTGAGAGTAGTAGGCAAGTCTTGAGTCTCCAAAGTGATATTATCTTCA
ATCCCTTGGATGTTTCATTGACAAATAAAACAAGAGAACTTGTCAACATT
CTCCACGACTACATGTTTTACGAGATTGCAAATCTATTAGGTAGAATTAA
TACTATCGATGATATGCTCATAGGACATTTAAATCGAAATTCAGATTGGA
AAATACAGTTAAATGATTATAAAGAACAAATTGATGATATTACAGACCAG
TTCACAAAATGGAATGTTGAATTCCCTTCGATACTAAGGTTTAGGGCTGA
CAAACAGCATCATCTTAATTACGTAACACGTGATGAGATAACCCAATTCC
CTTATGATCCGGAATTCAGGGATGAAAATTCTGTCAGTCTATCAATACAG
AATACGTGTCCGAAAATAGAATGTGGTCCAGGTAGATATAAAGTTTATGG
TGAAATATCTGGAGGTTATGGATGGAGGTGTGATTTATGTCCTGTTAATC
ATTACAAGTCAGCTGTTGGTGATGATGGATGTCTACCATGTGGTGGGAGG
TTCAATATTGACAACGGAAAACGTACAAAATGTATTGACCCTTACCGATC
TGTCTATCCTGAAGTTATCCAAATAACTCTATTCAAATCTATTTTTGGTT
TGTCCAGCACCGGATGCCTTGGTACCTTTATTACAGCATATGTTTTTATC
TGGAAAAGAAAAACTCCAGTCGTGATAAGTTCTGATTTCAGAGCTTCCAT
GATCCATTTGACTGTCATGGTATGTACTTTCATTACAGGTCCAGCTTTGC
AGGTCCTCCATCCGTCCCTGGAAATTTGCATTACAAGAGTTGCAATTATT
GGCATTTTGTATTCACTAAATATATGCTTCATGTTTGTAAAATCTCAGAA
ATTGTTGCAAGCTTTTCTGAGTAAAGTTCCAATCACCGTTGAGGAAATTA
GAAAAACCTTTTGGTTTCAAATTGTAACTGTTCTTACGTCAATCCTAATT
GTAAGTGCGCTTGTTGTGGTGACTTGTAAGATAAACATTCCTTTTGCATT
TTATTTGGATGATGTCAAAATGGAACGAATCTATTTCTGTGATACGAGCT
TCCATGGCAATGTTGTTATTGGTTTCATAATAGCGATACAGTTTGCTTGT
TTCGTGCAAGCGTTTCGTGGACGACATTTACCAAGTGTGATGAACGACGG
AATGGCTTTGGTGTATGCTTCGTTTGCATCTATCGTCATGTTAATAGTGA
TGTTTGCCATtggtaattttcaaaaacctgtCGAAAAGCAATTGTATCAG
AAACTGACGGTCGTGATCAATACTTTTGTAATATGGTTTATGATGTACGG
ACAAAAAGCTATCCGTATGCTATTGAACCCGGAGCAAAATACAAAGCGGT
ATTTTCAAGAGCAACGCTTGACGGAGATGAGAGAAAGAGTGGACGAGAAA
ATGAGAAGAAGCCAATCAAGTGACGCAGTTACATCTGAAAGTGATATACA
AGAGCAATCACTCTAAGAAACAGCCATTCTGTAGACAAATAGACATCAAT
GATTTTATCTTTATTCAAAAGACCATTCTTATATACTATTTATTATATTT
AAAACTAGGTCATAGTTTGCACTAACTGCCACCGCTCTCATAAAGGTCAC
GTATTTAAGTACAAGATTTGCAAAATCGCAA Run BLAST on NCBI protein sequence of TCONS_00022413-protein >TCONS_00022413-protein ID=TCONS_00022413-protein|Name=TCONS_00022413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=805bp
MVILWWLIFLLFDQSNAGLTFYQFGFFSLCQNNKIGNLTLREIEDARAYS
QALEGVIKESINSNIEQRLADFPDTNIHGSIKYQLYDVCDDFEKLTSLVI
EILIDEKYGVMSPTKEIFEPLVFVVYTHLPARMTSFVRNSFSFTKTYIHY
LDFAELPDGTLSTSKFNVYAKSLLEISNILNVQDLFFISISESTDRGLYR
RYYNMSITTFIEEQKCIQFRQYSPKELEKDPFKHDLVTGHLNPAFVLFSS
YNPTQLALSSLKELYNETTNLTIFTHDIEASYSWHYQMPYPESFPEYFVD
ISESSRQVLSLQSDIIFNPLDVSLTNKTRELVNILHDYMFYEIANLLGRI
NTIDDMLIGHLNRNSDWKIQLNDYKEQIDDITDQFTKWNVEFPSILRFRA
DKQHHLNYVTRDEITQFPYDPEFRDENSVSLSIQNTCPKIECGPGRYKVY
GEISGGYGWRCDLCPVNHYKSAVGDDGCLPCGGRFNIDNGKRTKCIDPYR
SVYPEVIQITLFKSIFGLSSTGCLGTFITAYVFIWKRKTPVVISSDFRAS
MIHLTVMVCTFITGPALQVLHPSLEICITRVAIIGILYSLNICFMFVKSQ
KLLQAFLSKVPITVEEIRKTFWFQIVTVLTSILIVSALVVVTCKINIPFA
FYLDDVKMERIYFCDTSFHGNVVIGFIIAIQFACFVQAFRGRHLPSVMND
GMALVYASFASIVMLIVMFAIGNFQKPVEKQLYQKLTVVINTFVIWFMMY
GQKAIRMLLNPEQNTKRYFQEQRLTEMRERVDEKMRRSQSSDAVTSESDI
QEQSL Run BLAST on NCBI transcript from alignment at sc0000414:156647..159827 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022413 ID=TCONS_00022413|Name=TCONS_00022413|organism=Clytia hemisphaerica|type=transcript|length=3181bp|location=Sequence derived from alignment at sc0000414:156647..159827 (Clytia hemisphaerica)
TTGCGATTTTGCAAATCTTGTACTTAAATACGTGACCTTTATGAGAGCGG
TGGCAGTTAGTGCAAACTATGACCTAGTTTTAAATATAATAAATAGTATA
TAAGAATGGTCTTTTGAATAAAGATAAAATCATTGATGTCTATTTGTCTA
CAGAATGGCTGTTTCTTAGAGTGATTGCTCTTGTATATCACTTTCAGATG
TAACTGCGTCACTTGATTGGCTTCTTCTCATTTTCTCGTCCACTCTTTCT
CTCATCTCCGTCAAGCGTTGCTCTTGAAAATACCGCTTTGTATTTTGCTC
CGGGTTCAATAGCATACGGATAGCTTTTTGTCCGTACATCATAAACCATA
TTACAAAAGTATTGATCACGACCGTCAGTTTCTGATACAATTGCTTTTCG
acaggtttttgaaaattaccaATGGCAAACATCACTATTAACATGACGAT
AGATGCAAACGAAGCATACACCAAAGCCATTCCGTCGTTCATCACACTTG
GTAAATGTCGTCCACGAAACGCTTGCACGAAACAAGCAAACTGTATCGCT
ATTATGAAACCAATAACAACATTGCCATGGAAGCTCGTATCACAGAAATA
GATTCGTTCCATTTTGACATCATCCAAATAAAATGCAAAAGGAATGTTTA
TCTTACAAGTCACCACAACAAGCGCACTTACAATTAGGATTGACGTAAGA
ACAGTTACAATTTGAAACCAAAAGGTTTTTCTAATTTCCTCAACGGTGAT
TGGAACTTTACTCAGAAAAGCTTGCAACAATTTCTGAGATTTTACAAACA
TGAAGCATATATTTAGTGAATACAAAATGCCAATAATTGCAACTCTTGTA
ATGCAAATTTCCAGGGACGGATGGAGGACCTGCAAAGCTGGACCTGTAAT
GAAAGTACATACCATGACAGTCAAATGGATCATGGAAGCTCTGAAATCAG
AACTTATCACGACTGGAGTTTTTCTTTTCCAGATAAAAACATATGCTGTA
ATAAAGGTACCAAGGCATCCGGTGCTGGACAAACCAAAAATAGATTTGAA
TAGAGTTATTTGGATAACTTCAGGATAGACAGATCGGTAAGGGTCAATAC
ATTTTGTACGTTTTCCGTTGTCAATATTGAACCTCCCACCACATGGTAGA
CATCCATCATCACCAACAGCTGACTTGTAATGATTAACAGGACATAAATC
ACACCTCCATCCATAACCTCCAGATATTTCACCATAAACTTTATATCTAC
CTGGACCACATTCTATTTTCGGACACGTATTCTGTATTGATAGACTGACA
GAATTTTCATCCCTGAATTCCGGATCATAAGGGAATTGGGTTATCTCATC
ACGTGTTACGTAATTAAGATGATGCTGTTTGTCAGCCCTAAACCTTAGTA
TCGAAGGGAATTCAACATTCCATTTTGTGAACTGGTCTGTAATATCATCA
ATTTGTTCTTTATAATCATTTAACTGTATTTTCCAATCTGAATTTCGATT
TAAATGTCCTATGAGCATATCATCGATAGTATTAATTCTACCTAATAGAT
TTGCAATCTCGTAAAACATGTAGTCGTGGAGAATGTTGACAAGTTCTCTT
GTTTTATTTGTCAATGAAACATCCAAGGGATTGAAGATAATATCACTTTG
GAGACTCAAGACTTGCCTACTACTCTCACTGATGTCCACAAAATATTCGG
GAAAGGATTCTGGGTAAGGCATTTGATAATGCCATGAATACGAAGCTTCT
ATATCGTGAGTAAAGATAGTGAGATTAGTAGTTTCATTGTAAAGTTCTTT
TAATGATGACAAGGCAAGTTGGGTTGGGTTATAACTGCTGAATAAAACAA
ACGCTGGGTTTAAATGACCAGTAACTAAATCATGTTTGAAAGGGTCTTTC
TCTAGTTCTTTTGGTGAGTACTGTCTGAACTGAATACACTTTTGTTCCTC
GATAAACGTGGTGATGCTCATATTGTAGTATCTGCGGTATAAACCTCTGT
CAGTTGATTCGCTGATCGAGATGAAGAACAAATCTTGTACATTTAAGatg
tttgaaatttccaacaGGCTTTTGGCATATACGTTGAACTTCGATGTGGA
AAGTGTTCCATCGGGTAGTTCAGCAAAATCAAGGTAGTGAATATATGTCT
TGGTGAACGAAAAAGAATTTCgaacaaatgacgtcattcggGCCGGTAGA
TGAGTGTAGACCACAAATACCAAAGGctcgaaaatttcttttgttggaCT
CATTACTCCATATTTTTCATCTATTAGAATCTCGATAACTAAGGATGTCA
GTTTCTCAAAATCATCACAAACGTCGTACAGTTGATATTTAATTGATCCA
TGAATATTTGTGTCTGGGAAATCCGCTAGTCGTTGTTCGATGTTTGAATT
TATAGATTCTTTGATTACGCCTTCCAAAGCTTGGCTATATGCTCTTGCAT
CTTCTATTTCTCTTAATGTAAGGTTtccaattttgttattttgacaaAGA
GAGAAAAATCCAAATTGGTAGAATGTCAAACCAgcatttgattggtcgaa
aagAAGAAATATTAGCCACCATAAGATTACCATTGTTATTAGTTTTTTTc
ctaaaatattgaaacattatATTGAGGTTTTCTCGTCAAATAATTGTTAT
GACATTACTTTAATCAGTGAACTGGCCAGAACtgttatcagatagaataa
TATCTCACTTTGGCTACTTCATCATTTATTCAGATTCCCTTggttaaaag
tgattattggtcgtaaaaacagtttctcgaaatctgatgcgtggatagaa
atctctttataagggtatgtttgcacggtattttttctcagttacgaaat
ttttagttttggaaaaCGATTGATATTTACAGACCTATTTTAGCTTACAA
TCTGGAATTTTAAGAGCTGAAATTTAGTGATTCCATCGATTTAAACtcct
aaaattataaaatagatTTTAGTCTATACGGAGAATAactaatttaggtg
aaaacacccaaatttcttttcttagaaggaggccccccagtcaaccctca
attcacgtattcacgtgcagatttttgccaattcacgtattcacgcgcga
aaaaaaacattttcacgttTACGTAATAATTTTGCtgttaattcttttgt
taaatgattgtgaccttattgggctaagtAA Coding sequence (CDS) from alignment at sc0000414:156647..159827 >TCONS_00022413 ID=TCONS_00022413|Name=TCONS_00022413|organism=Clytia hemisphaerica|type=CDS|length=2418bp|location=Sequence derived from alignment at sc0000414:156647..159827 (Clytia hemisphaerica)
TTAGAGTGATTGCTCTTGTATATCACTTTCAGATGTAACTGCGTCACTTG
ATTGGCTTCTTCTCATTTTCTCGTCCACTCTTTCTCTCATCTCCGTCAAG
CGTTGCTCTTGAAAATACCGCTTTGTATTTTGCTCCGGGTTCAATAGCAT
ACGGATAGCTTTTTGTCCGTACATCATAAACCATATTACAAAAGTATTGA
TCACGACCGTCAGTTTCTGATACAATTGCTTTTCGacaggtttttgaaaa
ttaccaATGGCAAACATCACTATTAACATGACGATAGATGCAAACGAAGC
ATACACCAAAGCCATTCCGTCGTTCATCACACTTGGTAAATGTCGTCCAC
GAAACGCTTGCACGAAACAAGCAAACTGTATCGCTATTATGAAACCAATA
ACAACATTGCCATGGAAGCTCGTATCACAGAAATAGATTCGTTCCATTTT
GACATCATCCAAATAAAATGCAAAAGGAATGTTTATCTTACAAGTCACCA
CAACAAGCGCACTTACAATTAGGATTGACGTAAGAACAGTTACAATTTGA
AACCAAAAGGTTTTTCTAATTTCCTCAACGGTGATTGGAACTTTACTCAG
AAAAGCTTGCAACAATTTCTGAGATTTTACAAACATGAAGCATATATTTA
GTGAATACAAAATGCCAATAATTGCAACTCTTGTAATGCAAATTTCCAGG
GACGGATGGAGGACCTGCAAAGCTGGACCTGTAATGAAAGTACATACCAT
GACAGTCAAATGGATCATGGAAGCTCTGAAATCAGAACTTATCACGACTG
GAGTTTTTCTTTTCCAGATAAAAACATATGCTGTAATAAAGGTACCAAGG
CATCCGGTGCTGGACAAACCAAAAATAGATTTGAATAGAGTTATTTGGAT
AACTTCAGGATAGACAGATCGGTAAGGGTCAATACATTTTGTACGTTTTC
CGTTGTCAATATTGAACCTCCCACCACATGGTAGACATCCATCATCACCA
ACAGCTGACTTGTAATGATTAACAGGACATAAATCACACCTCCATCCATA
ACCTCCAGATATTTCACCATAAACTTTATATCTACCTGGACCACATTCTA
TTTTCGGACACGTATTCTGTATTGATAGACTGACAGAATTTTCATCCCTG
AATTCCGGATCATAAGGGAATTGGGTTATCTCATCACGTGTTACGTAATT
AAGATGATGCTGTTTGTCAGCCCTAAACCTTAGTATCGAAGGGAATTCAA
CATTCCATTTTGTGAACTGGTCTGTAATATCATCAATTTGTTCTTTATAA
TCATTTAACTGTATTTTCCAATCTGAATTTCGATTTAAATGTCCTATGAG
CATATCATCGATAGTATTAATTCTACCTAATAGATTTGCAATCTCGTAAA
ACATGTAGTCGTGGAGAATGTTGACAAGTTCTCTTGTTTTATTTGTCAAT
GAAACATCCAAGGGATTGAAGATAATATCACTTTGGAGACTCAAGACTTG
CCTACTACTCTCACTGATGTCCACAAAATATTCGGGAAAGGATTCTGGGT
AAGGCATTTGATAATGCCATGAATACGAAGCTTCTATATCGTGAGTAAAG
ATAGTGAGATTAGTAGTTTCATTGTAAAGTTCTTTTAATGATGACAAGGC
AAGTTGGGTTGGGTTATAACTGCTGAATAAAACAAACGCTGGGTTTAAAT
GACCAGTAACTAAATCATGTTTGAAAGGGTCTTTCTCTAGTTCTTTTGGT
GAGTACTGTCTGAACTGAATACACTTTTGTTCCTCGATAAACGTGGTGAT
GCTCATATTGTAGTATCTGCGGTATAAACCTCTGTCAGTTGATTCGCTGA
TCGAGATGAAGAACAAATCTTGTACATTTAAGatgtttgaaatttccaac
aGGCTTTTGGCATATACGTTGAACTTCGATGTGGAAAGTGTTCCATCGGG
TAGTTCAGCAAAATCAAGGTAGTGAATATATGTCTTGGTGAACGAAAAAG
AATTTCgaacaaatgacgtcattcggGCCGGTAGATGAGTGTAGACCACA
AATACCAAAGGctcgaaaatttcttttgttggaCTCATTACTCCATATTT
TTCATCTATTAGAATCTCGATAACTAAGGATGTCAGTTTCTCAAAATCAT
CACAAACGTCGTACAGTTGATATTTAATTGATCCATGAATATTTGTGTCT
GGGAAATCCGCTAGTCGTTGTTCGATGTTTGAATTTATAGATTCTTTGAT
TACGCCTTCCAAAGCTTGGCTATATGCTCTTGCATCTTCTATTTCTCTTA
ATGTAAGGTTtccaattttgttattttgacaaAGAGAGAAAAATCCAAAT
TGGTAGAATGTCAAACCAgcatttgattggtcgaaaagAAGAAATATTAG
CCACCATAAGATTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022413-exon-sc0000414-1491911889:156647..159827 | TCONS_00022413-exon-sc0000414-1491911889:156647..159827 | Clytia hemisphaerica | exon |
| TCONS_00022413-exon-sc0000414-1510915933:156647..159827 | TCONS_00022413-exon-sc0000414-1510915933:156647..159827 | Clytia hemisphaerica | exon |
| TCONS_00022413-exon-sc0000414-1575043694:156647..159827 | TCONS_00022413-exon-sc0000414-1575043694:156647..159827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000414 | supercontig | sc0000414:156647..159827 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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