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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022360 ID=TCONS_00022360|Name=TCONS_00022360|organism=Clytia hemisphaerica|type=transcript|length=1318bp
GAAGAAAAAACTTCTTGAAAATAGTGAGAGTTATTCTCGAAAATGGAAGC
GAGAAGTATCGTTTTTTTTGCGTTGCTTTCAAAGATTTCTGTGATGCACA
CAGCAGAAGTGTTTTATCACACGCATGAATATATCCAATTAAAAGAAGGA
GTTTCAATTGATGCGCTAGAAGAAGATCAAGCACAACTTAATGCATCGTC
CATTACCGAATGTTTTTTACACAACAAGCAACAATCGTATTACATCCAAG
CATTACGTAACGGTTCGCATTGGATCTGCTCCTTTTTCGATTACGTCCAA
AATGTGTCCACGAAGTTTATACCTAAGGAAGGGAGTGAAGTATTTCGCTT
AGATTTTTCGTCGACTATTAATGAGTGTTTGGGTTGGCTTCGTCTTGGTA
ACAAAAAAGATGGTGTATATTGGATTAACATTCCTAATGGCAAAAGAACA
CGCGTCTTTTGTGATATGACAACGGATGGAGGAGGCTGGACTGTGTTCCA
GAAACGATTTGATGGTTCCGtcgatttttatcaaaattgggaAAGTTACC
GAAATGGGTTCGGATCACTTGAGGGTGAACATTGGTTAGGGTTGGAAAAC
ATTCATCTGTTGACCAGCATTTCATCAAACACCGAGCTTCGTTTGTACGG
AAAGCGATTCAACGGAGATGagaatttcgcgaattttgagaACTTTGTCA
TTGGTGATGAAGCTTCCAAATACCGATTGACAACAGGAACAGTCACAACG
GGAGCACATCACGAGCGATTTAAAACTGAATCAGATGGGAAAATGTTCAC
AACTAAGGACAATGACAACGATAGAAATCCAAATGAAAATTGTGCAATTA
AATACCCGGGTGCTTGGTGGTTCAATTCCTGTTTCGCTCTTAATTTTAAC
GGCCGATATTTTGCTGAGTATGAAACTTATCAGTATGCGAAGGGTATTCA
TTGGGGAGGTTGGGTTGGTCTTCTCGAAAGTTTGAAAGAATCCGCCATGA
TGATGCGAAGTATTTGAAGAATCCAATATCCAACAATTGCATTTTTTGGA
CCATGTATCTTATTCAATTCAGGTATATATTGAAGGATAAAAATTTACAG
TATTTCTTATACACCATTAAGGGCTCTGatgaccatagtcaaaagatCGA
ATACACAGATTTGGAGATAAAACTTTTGTATTGAgttccttgacactttt
aacaaaaaattgtctttataagttgtttctgaatttattctatcaagagt
aattGATCCCGAAGGGGGCCTATGTTGCTTCACGAATTGTGAGATCGATC
ATGTAGATTGTATCATTC Run BLAST on NCBI protein sequence of TCONS_00022360-protein >TCONS_00022360-protein ID=TCONS_00022360-protein|Name=TCONS_00022360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MEARSIVFFALLSKISVMHTAEVFYHTHEYIQLKEGVSIDALEEDQAQLN
ASSITECFLHNKQQSYYIQALRNGSHWICSFFDYVQNVSTKFIPKEGSEV
FRLDFSSTINECLGWLRLGNKKDGVYWINIPNGKRTRVFCDMTTDGGGWT
VFQKRFDGSVDFYQNWESYRNGFGSLEGEHWLGLENIHLLTSISSNTELR
LYGKRFNGDENFANFENFVIGDEASKYRLTTGTVTTGAHHERFKTESDGK
MFTTKDNDNDRNPNENCAIKYPGAWWFNSCFALNFNGRYFAEYETYQYAK
GIHWGGWVGLLESLKESAMMMRSI Run BLAST on NCBI transcript from alignment at sc0000411:299899..301216 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022360 ID=TCONS_00022360|Name=TCONS_00022360|organism=Clytia hemisphaerica|type=transcript|length=1318bp|location=Sequence derived from alignment at sc0000411:299899..301216 (Clytia hemisphaerica)
GAATGATACAATCTACATGATCGATCTCACAATTCGTGAAGCAACATAGG
CCCCCTTCGGGATCaattactcttgatagaataaattcagaaacaactta
taaagacaattttttgttaaaagtgtcaaggaacTCAATACAAAAGTTTT
ATCTCCAAATCTGTGTATTCGatcttttgactatggtcatCAGAGCCCTT
AATGGTGTATAAGAAATACTGTAAATTTTTATCCTTCAATATATACCTGA
ATTGAATAAGATACATGGTCCAAAAAATGCAATTGTTGGATATTGGATTC
TTCAAATACTTCGCATCATCATGGCGGATTCTTTCAAACTTTCGAGAAGA
CCAACCCAACCTCCCCAATGAATACCCTTCGCATACTGATAAGTTTCATA
CTCAGCAAAATATCGGCCGTTAAAATTAAGAGCGAAACAGGAATTGAACC
ACCAAGCACCCGGGTATTTAATTGCACAATTTTCATTTGGATTTCTATCG
TTGTCATTGTCCTTAGTTGTGAACATTTTCCCATCTGATTCAGTTTTAAA
TCGCTCGTGATGTGCTCCCGTTGTGACTGTTCCTGTTGTCAATCGGTATT
TGGAAGCTTCATCACCAATGACAAAGTtctcaaaattcgcgaaattctCA
TCTCCGTTGAATCGCTTTCCGTACAAACGAAGCTCGGTGTTTGATGAAAT
GCTGGTCAACAGATGAATGTTTTCCAACCCTAACCAATGTTCACCCTCAA
GTGATCCGAACCCATTTCGGTAACTTtcccaattttgataaaaatcgaCG
GAACCATCAAATCGTTTCTGGAACACAGTCCAGCCTCCTCCATCCGTTGT
CATATCACAAAAGACGCGTGTTCTTTTGCCATTAGGAATGTTAATCCAAT
ATACACCATCTTTTTTGTTACCAAGACGAAGCCAACCCAAACACTCATTA
ATAGTCGACGAAAAATCTAAGCGAAATACTTCACTCCCTTCCTTAGGTAT
AAACTTCGTGGACACATTTTGGACGTAATCGAAAAAGGAGCAGATCCAAT
GCGAACCGTTACGTAATGCTTGGATGTAATACGATTGTTGCTTGTTGTGT
AAAAAACATTCGGTAATGGACGATGCATTAAGTTGTGCTTGATCTTCTTC
TAGCGCATCAATTGAAACTCCTTCTTTTAATTGGATATATTCATGCGTGT
GATAAAACACTTCTGCTGTGTGCATCACAGAAATCTTTGAAAGCAACGCA
AAAAAAACGATACTTCTCGCTTCCATTTTCGAGAATAACTCTCACTATTT
TCAAGAAGTTTTTTCTTC Coding sequence (CDS) from alignment at sc0000411:299899..301216 >TCONS_00022360 ID=TCONS_00022360|Name=TCONS_00022360|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at sc0000411:299899..301216 (Clytia hemisphaerica)
TCAAATACTTCGCATCATCATGGCGGATTCTTTCAAACTTTCGAGAAGAC
CAACCCAACCTCCCCAATGAATACCCTTCGCATACTGATAAGTTTCATAC
TCAGCAAAATATCGGCCGTTAAAATTAAGAGCGAAACAGGAATTGAACCA
CCAAGCACCCGGGTATTTAATTGCACAATTTTCATTTGGATTTCTATCGT
TGTCATTGTCCTTAGTTGTGAACATTTTCCCATCTGATTCAGTTTTAAAT
CGCTCGTGATGTGCTCCCGTTGTGACTGTTCCTGTTGTCAATCGGTATTT
GGAAGCTTCATCACCAATGACAAAGTtctcaaaattcgcgaaattctCAT
CTCCGTTGAATCGCTTTCCGTACAAACGAAGCTCGGTGTTTGATGAAATG
CTGGTCAACAGATGAATGTTTTCCAACCCTAACCAATGTTCACCCTCAAG
TGATCCGAACCCATTTCGGTAACTTtcccaattttgataaaaatcgaCGG
AACCATCAAATCGTTTCTGGAACACAGTCCAGCCTCCTCCATCCGTTGTC
ATATCACAAAAGACGCGTGTTCTTTTGCCATTAGGAATGTTAATCCAATA
TACACCATCTTTTTTGTTACCAAGACGAAGCCAACCCAAACACTCATTAA
TAGTCGACGAAAAATCTAAGCGAAATACTTCACTCCCTTCCTTAGGTATA
AACTTCGTGGACACATTTTGGACGTAATCGAAAAAGGAGCAGATCCAATG
CGAACCGTTACGTAATGCTTGGATGTAATACGATTGTTGCTTGTTGTGTA
AAAAACATTCGGTAATGGACGATGCATTAAGTTGTGCTTGATCTTCTTCT
AGCGCATCAATTGAAACTCCTTCTTTTAATTGGATATATTCATGCGTGTG
ATAAAACACTTCTGCTGTGTGCATCACAGAAATCTTTGAAAGCAACGCAA
AAAAAACGATACTTCTCGCTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022360-exon-sc0000411-1491911889:299899..301216 | TCONS_00022360-exon-sc0000411-1491911889:299899..301216 | Clytia hemisphaerica | exon |
| TCONS_00022360-exon-sc0000411-1510915933:299899..301216 | TCONS_00022360-exon-sc0000411-1510915933:299899..301216 | Clytia hemisphaerica | exon |
| TCONS_00022360-exon-sc0000411-1575043694:299899..301216 | TCONS_00022360-exon-sc0000411-1575043694:299899..301216 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:299899..301216 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022360 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 166.392 bits (420), Expect = 5.121e-47 Identity = 94/228 (41.23%), Postives = 125/228 (54.82%), Query Frame = 1
Query: 325 KEGSEVFRLDFSSTINECLGWLRLGNKKDGVYWINIPNGKRTRVFCDMTTDGGGWTVFQKRFDGSVDFYQNWESYRNGFGSLEGEHWLGLENIHLLTSISSNTELRLYGKRFNGDENFANFENFVIGDEASKYRLTTGTVTTGAHHERFKTESDGKMFTTKDNDNDRNPNENCAIKYPGAWWFNSCFALNFNGRYFAEYETYQYAKGIHWGGWVGLLESLKESAMMMR 1008
+ G V L C L G G Y + +P G+ VFCDM T+GGGW VFQ+R DGSVDF+++W SYR GFG+ E E WLG EN+H LT + N ELR+ + FNG+ FA++ F + E Y+L G + G + S G+ FTT D D+D + N NCA+ GAWW+ SC+ N NGRY A E + GI W G+ + MM+R
Sbjct: 76 EPGDPVNLLRCQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLT-LQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHS-GRPFTTYDADHDSS-NSNCAVIVHGAWWYASCYRSNLNGRY-AVSEAAAHKYGIDWASGRGVGHPYRRVRMMLR 299
The following BLAST results are available for this feature:
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