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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022352 ID=TCONS_00022352|Name=TCONS_00022352|organism=Clytia hemisphaerica|type=transcript|length=1480bp
CAGGAAAAGTGATGTCCTAATCACTGGTACTAAAGTGCAGCATTAGGaat
aaaaagcaaaataaaccaATTAACTGTCAACTCTCGTAAATAATTTTCGA
TGGAGCCATACCTTCACGATTTTGGGGTTTGGACCCTTTATTTCAATTAC
CTGAACGTATACGTGCTTCAATAGAAGAAGTACAATGGTTTGATGATAAG
CTATAAGCTATGTACGAAAAAAGGAAATCAAATGTCTCACTGGCCCAATG
AGAACCATGGGATATCTTTGAAGTcaattactttttttctttataatgta
GGTTACACGGCACACTAACGAACAAATAAGACAAAACACTACTGACAAAA
AGTAATAGCCTTATCCCCCTGCTAGGCACCAAGAAGggatatcgccagag
gtacaaGGCTAAATGAAAGAATGTTTATGTCCCACGTCAATGCGCCCATC
AGCATAATAGCATCAAGTGGGCTATGTGACCCTGGTTTTCGAGGGTGGGG
AATTAGTTCTCAGTTTTAAAGCCAACaaaagaaatggaaaatgtTCTGAA
GATTACAACAGTGAGTTTAAGGCGAACCTGGAATGAGTCCAACTCCGGGC
GCGTGTAGCCAGACGTCTTGAGCTTTCTCGATGGGTTTCTCTTACATTTG
GTACAAACTTTCTTACGAGGACTTTAATTCCCTCCGAAAAATCCTCTTTT
TTATAAGTCTTCAACTCTTCAAGTGTAGAATTAAACCGAAGACGCAATTC
TTGGTTTTGAGCGATGAATTTATACAAATCCTCGCACAACGAAGAATTTT
GGTCAGCACGGACGCTTGGTGGAAGCAAAATGAAACCAGTTACCAACGTT
TTCTCTACGCTATAGGGAATGTTAAGTTTCTGTCGTAGCATCTTATCGTA
GAAAGCTCTTCTGGTGTGTAGTCGAATCTCTCTTTTATTCTAAGCCTCAT
CCCTCTATTGAAACTGGCCATAAACTTATCCATATCATCCGGATAGCCTG
CAAAGATAAATATAGGGTATTTTTCGTCGGGATTTTTTTAGGTGTATTGC
ATTTGCATGATTGTATCCACTGCTTCCCtcgaatgattttttttcacttt
cttgaGGACAAAGTTGATAAGCCTCGTCTATAAACATTACACGTCCAAAG
GCTGATTGTATAACTTCTCTACATCGTTTGGGCGTATCAGATACGTATCC
AGAGACGATGTCGTCCTCGAGGGCGTCCTTTTGGACCTCTACGATGTCAG
GTGATTCAGTGATTCCTATTTCGAATAAGATGCCTGGAATACAAAGCAAA
AAGATCATACATGACTTGCCATTTAATTAATCTGTGTCAAAAAGATGTGT
AGTGTTTTTAGTTTTGCGAATTACTTTTTAGCATCACGACAAAATACAGC
AAGCAATGCACTGTTGTCACTAACCATGGCAAACactgtaattaaaaaaa
aaaatattgcagcAACAGGAAGAAAGGAAG Run BLAST on NCBI protein sequence of TCONS_00022352-protein >TCONS_00022352-protein ID=TCONS_00022352-protein|Name=TCONS_00022352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MLRQKLNIPYSVEKTLVTGFILLPPSVRADQNSSLCEDLYKFIAQNQELR
LRFNSTLEELKTYKKEDFSEGIKVLVRKFVPNVRETHRESSRRLATRARS
WTHSRFALNSLL Run BLAST on NCBI transcript from alignment at sc0000411:95752..97231 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022352 ID=TCONS_00022352|Name=TCONS_00022352|organism=Clytia hemisphaerica|type=transcript|length=1480bp|location=Sequence derived from alignment at sc0000411:95752..97231 (Clytia hemisphaerica)
CTTCCTTTCTTCCTGTTgctgcaatatttttttttttaattacagtGTTT
GCCATGGTTAGTGACAACAGTGCATTGCTTGCTGTATTTTGTCGTGATGC
TAAAAAGTAATTCGCAAAACTAAAAACACTACACATCTTTTTGACACAGA
TTAATTAAATGGCAAGTCATGTATGATCTTTTTGCTTTGTATTCCAGGCA
TCTTATTCGAAATAGGAATCACTGAATCACCTGACATCGTAGAGGTCCAA
AAGGACGCCCTCGAGGACGACATCGTCTCTGGATACGTATCTGATACGCC
CAAACGATGTAGAGAAGTTATACAATCAGCCTTTGGACGTGTAATGTTTA
TAGACGAGGCTTATCAACTTTGTCCtcaagaaagtgaaaaaaaatcattc
gaGGGAAGCAGTGGATACAATCATGCAAATGCAATACACCTAAAAAAATC
CCGACGAAAAATACCCTATATTTATCTTTGCAGGCTATCCGGATGATATG
GATAAGTTTATGGCCAGTTTCAATAGAGGGATGAGGCTTAGAATAAAAGA
GAGATTCGACTACACACCAGAAGAGCTTTCTACGATAAGATGCTACGACA
GAAACTTAACATTCCCTATAGCGTAGAGAAAACGTTGGTAACTGGTTTCA
TTTTGCTTCCACCAAGCGTCCGTGCTGACCAAAATTCTTCGTTGTGCGAG
GATTTGTATAAATTCATCGCTCAAAACCAAGAATTGCGTCTTCGGTTTAA
TTCTACACTTGAAGAGTTGAAGACTTATAAAAAAGAGGATTTTTCGGAGG
GAATTAAAGTCCTCGTAAGAAAGTTTGTACCAAATGTAAGAGAAACCCAT
CGAGAAAGCTCAAGACGTCTGGCTACACGCGCCCGGAGTTGGACTCATTC
CAGGTTCGCCTTAAACTCACTGTTGTAATCTTCAGAacattttccatttc
ttttGTTGGCTTTAAAACTGAGAACTAATTCCCCACCCTCGAAAACCAGG
GTCACATAGCCCACTTGATGCTATTATGCTGATGGGCGCATTGACGTGGG
ACATAAACATTCTTTCATTTAGCCttgtacctctggcgatatccCTTCTT
GGTGCCTAGCAGGGGGATAAGGCTATTACTTTTTGTCAGTAGTGTTTTGT
CTTATTTGTTCGTTAGTGTGCCGTGTAACCtacattataaagaaaaaaag
taattgACTTCAAAGATATCCCATGGTTCTCATTGGGCCAGTGAGACATT
TGATTTCCTTTTTTCGTACATAGCTTATAGCTTATCATCAAACCATTGTA
CTTCTTCTATTGAAGCACGTATACGTTCAGGTAATTGAAATAAAGGGTCC
AAACCCCAAAATCGTGAAGGTATGGCTCCATCGAAAATTATTTACGAGAG
TTGACAGTTAATtggtttattttgctttttattCCTAATGCTGCACTTTA
GTACCAGTGATTAGGACATCACTTTTCCTG Coding sequence (CDS) from alignment at sc0000411:95752..97231 >TCONS_00022352 ID=TCONS_00022352|Name=TCONS_00022352|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000411:95752..97231 (Clytia hemisphaerica)
ATGCTACGACAGAAACTTAACATTCCCTATAGCGTAGAGAAAACGTTGGT
AACTGGTTTCATTTTGCTTCCACCAAGCGTCCGTGCTGACCAAAATTCTT
CGTTGTGCGAGGATTTGTATAAATTCATCGCTCAAAACCAAGAATTGCGT
CTTCGGTTTAATTCTACACTTGAAGAGTTGAAGACTTATAAAAAAGAGGA
TTTTTCGGAGGGAATTAAAGTCCTCGTAAGAAAGTTTGTACCAAATGTAA
GAGAAACCCATCGAGAAAGCTCAAGACGTCTGGCTACACGCGCCCGGAGT
TGGACTCATTCCAGGTTCGCCTTAAACTCACTGTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022352-exon-sc0000411-1491911889:95752..97231 | TCONS_00022352-exon-sc0000411-1491911889:95752..97231 | Clytia hemisphaerica | exon |
| TCONS_00022352-exon-sc0000411-1510915933:95752..97231 | TCONS_00022352-exon-sc0000411-1510915933:95752..97231 | Clytia hemisphaerica | exon |
| TCONS_00022352-exon-sc0000411-1575043694:95752..97231 | TCONS_00022352-exon-sc0000411-1575043694:95752..97231 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:95752..97231 . |
Blast
The following BLAST results are available for this feature:
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