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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022341 ID=TCONS_00022341|Name=TCONS_00022341|organism=Clytia hemisphaerica|type=transcript|length=1522bpRun BLAST on NCBI protein sequence of TCONS_00022341-protein >TCONS_00022341-protein ID=TCONS_00022341-protein|Name=TCONS_00022341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp MATNTWGRDEILGNFQAATGNEDFASCLQILESYGWDLQLALNSYFQDQERun BLAST on NCBI transcript from alignment at sc0000411:214274..226955- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022341 ID=TCONS_00022341|Name=TCONS_00022341|organism=Clytia hemisphaerica|type=transcript|length=12682bp|location=Sequence derived from alignment at sc0000411:214274..226955- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000411:214274..226955- >TCONS_00022341 ID=TCONS_00022341|Name=TCONS_00022341|organism=Clytia hemisphaerica|type=CDS|length=18984bp|location=Sequence derived from alignment at sc0000411:214274..226955- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022341 vs. Swiss-Prot (Human)
Match: FAF1 (FAS-associated factor 1 OS=Homo sapiens GN=FAF1 PE=1 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 2.750e-44 Identity = 108/371 (29.11%), Postives = 184/371 (49.60%), Query Frame = 1
Query: 448 KTLTFEISWHTQNLTIALTENQTVEELKRLLHLQTDVAMDEINLEGWPSGDSAVQSDTVLSTLNLSSVTHLVFHVPAKVTVSPAEYLACNIPDIASQRKEDENKEFHAPRAINVSDSFNQETSAPQISLNVHHN--GRDYRLRYNRNETVKDVKRELFILTKINTRNQEWNGWPEGANDNSK-LSELELA-PDHFLLI----------QSKEGESSNGHTIINEKPMDSGTAGSVEDSEDELMIMHHXXXXXXXXXXXXXXXQSKKPKTLLARDSNDTFDVMIQFQHNFVERYGDVHPPFYVGPLKNAIEEAGGSRAAERRPLLLYLHHDSSVLTHIFCSQILCSQQLVSYVTHNFVTWPWDMSHESNRQR 1518
+ L F + + +N+ + L + TV E+K++L + + + ++ L+GW +GD V+ TVL +L+L L P D + A + +S NQ L + H R+Y L ++ + T+++VKR ++ LT I R+Q W GWP A D+S L+E L+ P H L + + E + ++ H + + D A + E+ M A+ + + ++ ++ + D ++QF F RYGD HP F++G L+ A +EA +A +R+ L +YLHHD SVLT++FCSQ+LC++ +VSY++ NF+TW WD++ +SNR R
Sbjct: 99 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD--VEDSTVLKSLHLPKNNSLYVLTP------------------------DLPPPSSSSHAGALQESLNQ-----NFMLIITHREVQREYNLNFSGSSTIQEVKRNVYDLTSIPVRHQLWEGWPTSATDDSMCLAESGLSYPCHRLTVGRRSSPAQTREQSEEQITDVHMVSDSDGDDFEDATEFGVDDGEVFGM---------------ASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRAR 423 The following BLAST results are available for this feature:
BLAST of TCONS_00022341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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