TCONS_00022324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022324
Unique NameTCONS_00022324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022324 ID=TCONS_00022324|Name=TCONS_00022324|organism=Clytia hemisphaerica|type=transcript|length=3491bp
agcaaattaaatgttgaaaaataccTAAAATCCGTAAAGTGAATTTAGAA
TTAGAATGAATATGGTCATATTGTCATTGGAATGACGGACCGGAACGAGG
ATTCTTCTAAAGAAGAACACCATGGTGGTGCGTTGTATCCATGCCAACCA
ACCAAACCACGTGATGAAGATTGCTGCGGTAACGGCTGCTCAACATGTGT
GTTCGACCTCTACGAGTTGCAActttcaagatggcggcaaagGTGTCAAC
GAATAGATGAGCAGAATGACGAGGAGGATATTGAAAAGGATGAAATCATA
TCCATTTTTGAATATCGATCCTTTCGATTAATCGATATCATCGATCATTC
TCCGATACTTTATTTCACTTTCGAAATCCCCAACAATAAAAAGTTACCTA
TGGCTCGTGGACAACACTTGGTGGCAAGATGTACAGATAAAAATGATGTT
TCAATCGTAAGACCTTACACACCGGTCAGTGCTCCACATCAACGTGGTTC
GTTCCAAGTCGCCGTCAAGATATACGAAGAAGGGGCGATGTCACGAAGTA
TGAAGACATGGAAGATTGGATCGTCTGTCGATTGGAGAGGTCCTTTTGGT
CATTTACATACAGTCCATGAAAAGTGTCAACAGTTGGTTATGTTAGCTGG
AGGGACTGGTATCACACCTATGATACAATTTGCGGACCAGATTCTGTCGA
ATGAAGATAGTGAGACGAGAATCTTGTTGTGTTACAGTGCCCATGATGCA
GACGAAATCATCCAAAAAGAACGATTCGATCGGTGGAAAGACTTctggaa
tttcaaaattcattactTCATTACCgGCGAACAGGCTAACGAGAAGAAGG
AAGAGAAGATATGGAGATATGGAGATGAAGTACACCACCAACATCTCGAT
AAACAATGGTTTGAAGGCCATCTCATCCAATTCAAAAATGTGGACCCTTC
AGACCAACTCTTCTTCGTGTGTGGCTCCACACTGTTCAACAATGCCATGA
AACAGTTAGTTAGAGAAATGTTCAAAGTCACAGATGAAAGAATAGTGACG
TTTTCTTGAATGTTTTCTTGTGAAATCGGTTTTAAGGGTGGGAACTTTCG
TGAATTTCGTACATTTACCACGCGTCTGACAAAAGTTAGCATCAAAGATT
GTGAATTCTGAATTGTTGAAGATGTCACAAGAAGTGATAAAATGTCATCC
CTTGGTATGATCATTTGAACTAAATTTGCTGATGTGCCAATTCGAATGTA
TGCATTTGGCGTTGAAGTGTTCATTAAAAACAACTATCTATATACTTGCG
AAAGATGGAAAAAATGGAACTGACGAAGGGGTGGTTTGTGGGCATAAACC
ATGCATACTCACATAAGAGAAGTATGTCATTTGAACAATGTCTTATGTCT
TGGAAATGTTGTAGGAGATTGTGTAGATGTATTTGCCGTGTTGTTTGAAT
TGGTTGCTGAAGTGTTCTTACAGCCAGGTTGTTGGTTATCATTGCCATCA
TTTCCGTCCGAGAATTGTCcagaatttttagaaaatcgtGTGTTTGTTGG
GTATTGTTGACTTGGTTATTGGATTGGTTGAGATTTGTCCCTTTGACATG
GGTGAAGGTACAATCAAGGTTGAAGCATTTCCCTTTTGTGATTGAGGACG
AACACATACGAGGGTAAAACATGGTACAATTGGTACCAGCACTCAATCCT
ATTGGAGATTTGTTACCATGTTTCAGTAATGGCGCACATTTTTGGATGTT
TGAATCGACAATTCTTGCCCTTGATATCATGTTTCCCCTTTTTGTAGAAA
TTGCAAACTGGGATTTCATCAGAGTCATTTTCTTTGTCTGTTGTATTTTC
AGAAGACAATGTTGCATCATTCTCGTTGGCgttttatcttcaaaaagtTA
GTTTTTACTATTCCCTCAAGTGTTTCGTTTTTTGTTCGTCGACCAAAAGG
CACTCCTTTGGAGTGGATGGAATTGGTGGGAGGGTACGCTTTGGAGTGTT
TAGGATCTGATTTTCTGTAGATTCAGCAGCCTCTGTTATTTGAGTTGGAG
ATACTGTAGTTGAAGATTTTTCATACGGTAGGGTTTCCGTTTAATCATTT
GGAACATGAGGGAAATTGATGGTTATTCATCTTGGCAAGACGGACAAAAA
TAGTAAAGGCCAGGGATTTTGTAGATAAGGTGGCGTTATTCCTCTTTTCG
TTCACAAGGCTCATACTCCTTAAAAGATCAAGATAGCACAGTCGATGCAC
TTCTTGACCACATGCCCCTCAACTTATGAGTGGTTTGTCATTGAGTTTGA
AGGAATACGACGCTTTACAAATCTGGCTTACGTCTGGGAAGAAATTCTTG
ATTTTCAAGCATAAAAGGTGaattagctctagtttagacggcccactttt
tgccctgcctattctaattgtgaattaaagaggGCACAAAGTGGGCTGTC
TAAAGTGATGCATAGCCCTCTTTTGACGTCAATGCAATGTCTTCTTTCAA
Acctttccaagcaaagattttaacaaccaactttgtgccctctttctgcc
tactctaacaattagaatagacagggcagaaagtcggccgtctaaactag
agcttacaTCATCTTTAGTCACCTTGTCGGAGAGTAATGAAGGGGGTGGC
ATTAGAAAGTTAAGGGTATCAATGACCATTTGTTTGCGACGTGATTTGAG
TGCTTTGATATTGATCGCTAGTTGGTGTTTCTTGGTTATAAATCCGTAGA
CAATTGTTGATGGTATCGTTTGGAGCACTTTCAACAAGACCAGCAATTGC
TCGTTTCCAGGTTTCCATCAAGTTTTCAGATACACGTCATTGTTTGTCTA
AGTGCTGATGATTTTGTGACATGTCAGCGTCTTTATATCGGCAAGCCAGA
GATTGGGAAAAAAGTAGGTATGAAAACAGTACAGGGCCCTGATCTGTTGA
TCAGGTGCACATGGGAACTGGGTGACCAGCCACAGGACCCTTGTGATATG
ATATTGATTGCTTGAGCAAgaagtaaaattaaaagttCAATGATTGATCC
AGAGCTAATCTTGGTGTGTTAAAGTTTGAGGTAGTCTTTCTTTCTTGTTG
ATATTCTTCAAGTTAATTTTGTATTCGTCTTCTTTATtgcttttttcaat
atttttgtttagtttttcaCTAAAAATGAATGACCTCTCCTGAGTGTTTC
CACATAGGTTCAGCCTTTTAATCAATTAATGGTGTGGTTGgtgtttttgt
taattgtaccgAGCCTGCATTGATTCTCAAATAATGTCTCTGCATCTTGG
CCACAGAGAGTCTTCATTATTTTATTCGAGGGGAAAACGAAGACTgacta
aaatatattttttactgAACACACTCGATCAATAATTTGGGTATCTACCA
ATTGTATTATTCAGACGATgatcttttaaaagattttttaaaataatttt
taccaTAACacttgagaatttttttaagattcttttaattt
Run BLAST on NCBI

protein sequence of TCONS_00022324-protein

>TCONS_00022324-protein ID=TCONS_00022324-protein|Name=TCONS_00022324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MTDRNEDSSKEEHHGGALYPCQPTKPRDEDCCGNGCSTCVFDLYELQLSR
WRQRCQRIDEQNDEEDIEKDEIISIFEYRSFRLIDIIDHSPILYFTFEIP
NNKKLPMARGQHLVARCTDKNDVSIVRPYTPVSAPHQRGSFQVAVKIYEE
GAMSRSMKTWKIGSSVDWRGPFGHLHTVHEKCQQLVMLAGGTGITPMIQF
ADQILSNEDSETRILLCYSAHDADEIIQKERFDRWKDFWNFKIHYFITGE
QANEKKEEKIWRYGDEVHHQHLDKQWFEGHLIQFKNVDPSDQLFFVCGST
LFNNAMKQLVREMFKVTDERIVTFS
Run BLAST on NCBI

transcript from alignment at sc0000411:68771..74330-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022324 ID=TCONS_00022324|Name=TCONS_00022324|organism=Clytia hemisphaerica|type=transcript|length=5560bp|location=Sequence derived from alignment at sc0000411:68771..74330- (Clytia hemisphaerica)
AGCAAATTAAATGTTGAAAAATACCTAAAATCCGTAAAGTGAATTTAGAA
TTAGAATGAATATGGTCATATTGTCATTGGAATGACGGACCGGAACGAGG
ATTCTTCTAAAGAAGAACACCATGGTGGTGCGTTGTATCCATGCCAACCA
ACCAAACCACGTGATGAAGATTGCTGCGGTAACGGCTGCTCAACATGTGT
GTTCGACCTCTACGAGTTGCAACTTTCAAGATGGCGGCAAAGGTGTCAAC
GAATAGATGAGCAGAATGACGAGGAGGATATTGAAAAGGATGAAATCATA
TCCATTTTTGAATATCGATCCTTTCGATTAATCGATATCATCGATCATTC
TCCGATACTTTATTTCACTTTCGAAATCCCCAACAATAAAAAGTTACCTA
TGGCTCGTGGACAACACTTGGTGGCAAGGTAAGGTAACGTACATACAGTA
CCACTACATGAAAAAAGCAACTATTGCCTTAAATGGAGTATTTCCCGAAC
GGGAAGGTGAGAATAACCCGAAAAGGAAACTGTTTCCAGATTGAAAATTT
CATCACGTTTCCCGTTTTGTTCAAGAAACTTTTCATCGTTCCCGAACGGG
AAATAGAAATTTGTAAACAAAGCAGATTTTTGTTTCCCGACCGAGAAAAT
TTTTCCAATTAGGGAAGTTTTTAATTGGGAATGGGGAAAGTAGAATTAAG
AAGCGATTACCAGGTGGATTTCTTAACTACCTGGTGAATATTATTTATTT
TCCCTCCTTTACAAGAGGGACAAGTTTTTAACTTTCCACAGGCATTTCCG
GAGTACTCAGAGACCACTTTCTCGATCGGGAAACTGGTAAACTTCCCGAT
TTGAAAAGTCTAGCCATTTCGGGAAGTTTCCCACCTTCCCGTTCGGGAAA
TATTTCCTGTTAAGGCAATAGTTGCCTTTTCCATATACCTTATCGGGGAA
ATGTCGGGGGAAAGTGACGAAAATTTTGAGGGGGTGACGAAATTTTTCCC
CGATATTTTATCACCCGACCAAGACTTTTACCCGATTTTTTTATCCCCGA
CCAAAACTTTTACCCGATTTTTTAAACTCCAACCAAAATTAAAATCTAAA
TTTTTACTTGGGTGAGAGTGACTAAATTGAACATTTCGTTGGGGAAAAGT
GACGAATTTGAAATTTTGGTCGGGGGAAAGTGACAAAAATGCCTCTAGGT
GACGAAATTTTTCCCCGACGAAAAAAAACCCGACTAGATAAAACTCCGAC
ATTTTTTCCCCAATGCCCAAGTAATATATGAAGTGATTCAGATTCTTTAG
ACCCTCCGCCGCGTTTATACGCCGTGTATGCGATGGTGATCATTTAGTTC
AATGATAATGCACATCAATTTGCTTTTTTTCTTTTGCCGCTTTTTAGGTA
TGCAGAATAAACACCTTATCGATAAATGTGTGGCGGCAAAAATTACTGGC
CCAGAAAAAGTGACAAAATTTTTAATAAGTGACGTAATTTTTTTAGCGAT
GAATATTTTACCTCCGTACCATAAAAAACTACTTTTTTATCAAATCCATT
ACAGATGTACAGATAAAAATGATGTTTCAATCGTAAGACCTTACACACCG
GTCAGTGCTCCACATCAACGTGGTTCGTTCCAAGTCGCCGTCAAGGTAAA
TTTTTTTAGTTGAAAAGCATAGTTTTCAATGATCATAATATTTACTGAAA
TGCGTCTTCATAGAGAATTATTTACATTTTCAAATGGAATCAAAAAGAAT
GTTTTCGTGATACAAAAGCGCAAAAGTTGGGATCTTGATCACCAAAGTGT
AAACAATATATTATGTTATGTTGACGTATCCTGGCAAACGTATACATTAT
AAACGAAGTTCACAATGATTTTATACATTTCTAGTAGAGCGTATAGCCTT
CAGAAAATCAATCGAGGTTTCTTACCGTACTCTAGATATACGAAGAAGGG
GCGATGTCACGAAGTATGAAGACATGGAAGATTGGATCGTCTGTCGATTG
GAGAGGTCCTTTTGGTCATTTACATACAGTCCATGAAAAGGTATAGTGAG
AGTTGTAGTTGTTTAATTTATCACTTAATTGAGAAACTTCGAAATGACCT
ATTTGTATTTCAAACAACTAGTGAAACTGGATAGGCTAGAAAAATCGTTC
CTCTCCAAGAGATAAGAAAGATGCTACGAGAGCGATCACCAAGATATAAA
GGTACTGAAACGGTGATAGGAATTATGAGCTGGAGTTTACGTTTTTGTGA
TTCTTTGAAATTCATAAAGAAAACCACTTGCTGTTGTAGAATAATTTTCG
GGGACCCAATATTCTGTTCCCACATATTCTTTCTGTACATACATGAGTAA
TTGATGCAGTGGTTTGAAATGCTGGTTTATGTGATCTATGTTGCTTCATC
TTATTCTTCAGTGTCAACAGTTGGTTATGTTAGCTGGAGGGACTGGTATC
ACACCTATGATACAATTTGCGGACCAGATTCTGTCGAATGAAGATAGTGA
GACGAGAATCTTGTTGTGTTACAGTGCCCATGATGCAGACGAAATCATCC
AAAAAGAACGATTCGATCGGTGGAAAGACTTCTGGAATTTCAAAATTCAT
TACTTCATTACCGTGAGTGTGGTAGTTGTGTAGTTTACATTCAACGGAAG
TGAAATGTAGTTTTGCTTTTGAACACGTTCATCAAGAGAGTGTCGGATAC
GTATAAACGTGTTTTACAATCATCACAGTCAACTATCTTAAAGGCTTAAT
GTTTTTTTGTATGTGATTTGAACAAAAAAATCTCAGAATCTCAATATCTC
AAAAATCTCATTAAAAGGCTAATGAAATGGTTTGTTTTAGAAGCTTTGGT
TTTCGAGTATCCATTTTGAAGTATTATTTTTTGGCCAATTTCAGGGCGAA
CAGGCTAACGAGAAGAAGGAAGAGAAGATATGGAGATATGGAGATGAAGT
ACACCACCAACATCTCGATAAACAATGGTTTGAAGGCCATCTCATCCAAT
TCAAAAATGTGGACCCTTCAGACCAACTCTTCTTCGTGTGTGGCTCCACA
CTGTTCAACAATGCCATGAAACAGTTAGTTAGAGAAATGTTCAAAGTCAC
AGATGAAAGAATAGTGACGTTTTCTTGAATGTTTTCTTGTGAAATCGGTT
TTAAGGGTGGGAACTTTCGTGAATTTCGTACATTTACCACGCGTCTGACA
AAAGTTAGCATCAAAGATTGTGAATTCTGAATTGTTGAAGATGTCACAAG
AAGTGATAAAATGTCATCCCTTGGTATGATCATTTGAACTAAATTTGCTG
ATGTGCCAATTCGAATGTATGCATTTGGCGTTGAAGTGTTCATTAAAAAC
AACTATCTATATACTTGCGAAAGATGGAAAAAATGGAACTGACGAAGGGG
TGGTTTGTGGGCATAAACCATGCATACTCACATAAGAGAAGTATGTCATT
TGAACAATGTCTTATGTCTTGGAAATGTTGTAGGAGATTGTGTAGATGTA
TTTGCCGTGTTGTTTGAATTGGTTGCTGAAGTGTTCTTACAGCCAGGTTG
TTGGTTATCATTGCCATCATTTCCGTCCGAGAATTGTCCAGAATTTTTAG
AAAATCGTGTGTTTGTTGGGTATTGTTGACTTGGTTATTGGATTGGTTGA
GATTTGTCCCTTTGACATGGGTGAAGGTACAATCAAGGTTGAAGCATTTC
CCTTTTGTGATTGAGGACGAACACATACGAGGGTAAAACATGGTACAATT
GGTACCAGCACTCAATCCTATTGGAGATTTGTTACCATGTTTCAGTAATG
GCGCACATTTTTGGATGTTTGAATCGACAATTCTTGCCCTTGATATCATG
TTTCCCCTTTTTGTAGAAATTGCAAACTGGGATTTCATCAGAGTCATTTT
CTTTGTCTGTTGTATTTTCAGAAGACAATGTTGCATCATTCTCGTTGGCG
TTTTATCTTCAAAAAGTTAGTTTTTACTATTCCCTCAAGTGTTTCGTTTT
TTGTTCGTCGACCAAAAGGCACTCCTTTGGAGTGGATGGAATTGGTGGGA
GGGTACGCTTTGGAGTGTTTAGGATCTGATTTTCTGTAGATTCAGCAGCC
TCTGTTATTTGAGTTGGAGATACTGTAGTTGAAGATTTTTCATACGGTAG
GGTTTCCGTTTAATCATTTGGAACATGAGGGAAATTGATGGTTATTCATC
TTGGCAAGACGGACAAAAATAGTAAAGGCCAGGGATTTTGTAGATAAGGT
GGCGTTATTCCTCTTTTCGTTCACAAGGCTCATACTCCTTAAAAGATCAA
GATAGCACAGTCGATGCACTTCTTGACCACATGCCCCTCAACTTATGAGT
GGTTTGTCATTGAGTTTGAAGGAATACGACGCTTTACAAATCTGGCTTAC
GTCTGGGAAGAAATTCTTGATTTTCAAGCATAAAAGGTGAATTAGCTCTA
GTTTAGACGGCCCACTTTTTGCCCTGCCTATTCTAATTGTGAATTAAAGA
GGGCACAAAGTGGGCTGTCTAAAGTGATGCATAGCCCTCTTTTGACGTCA
ATGCAATGTCTTCTTTCAAACCTTTCCAAGCAAAGATTTTAACAACCAAC
TTTGTGCCCTCTTTCTGCCTACTCTAACAATTAGAATAGACAGGGCAGAA
AGTCGGCCGTCTAAACTAGAGCTTACATCATCTTTAGTCACCTTGTCGGA
GAGTAATGAAGGGGGTGGCATTAGAAAGTTAAGGGTATCAATGACCATTT
GTTTGCGACGTGATTTGAGTGCTTTGATATTGATCGCTAGTTGGTGTTTC
TTGGTTATAAATCCGTAGACAATTGTTGATGGTATCGTTTGGAGCACTTT
CAACAAGACCAGCAATTGCTCGTTTCCAGGTTTCCATCAAGTTTTCAGAT
ACACGTCATTGTTTGTCTAAGTGCTGATGATTTTGTGACATGTCAGCGTC
TTTATATCGGCAAGCCAGAGATTGGGAAAAAAGTAGGTATGAAAACAGTA
CAGGGCCCTGATCTGTTGATCAGGTGCACATGGGAACTGGGTGACCAGCC
ACAGGACCCTTGTGATATGATATTGATTGCTTGAGCAAGAAGTAAAATTA
AAAGTTCAATGATTGATCCAGAGCTAATCTTGGTGTGTTAAAGTTTGAGG
TAGTCTTTCTTTCTTGTTGATATTCTTCAAGTTAATTTTGTATTCGTCTT
CTTTATTGCTTTTTTCAATATTTTTGTTTAGTTTTTCACTAAAAATGAAT
GACCTCTCCTGAGTGTTTCCACATAGGTTCAGCCTTTTAATCAATTAATG
GTGTGGTTGGTGTTTTTGTTAATTGTACCGAGCCTGCATTGATTCTCAAA
TAATGTCTCTGCATCTTGGCCACAGAGAGTCTTCATTATTTTATTCGAGG
GGAAAACGAAGACTGACTAAAATATATTTTTTACTGAACACACTCGATCA
ATAATTTGGGTATCTACCAATTGTATTATTCAGACGATGATCTTTTAAAA
GATTTTTTAAAATAATTTTTACCATAACACTTGAGAATTTTTTTAAGATT
CTTTTAATTT

Coding sequence (CDS) from alignment at sc0000411:68771..74330-

>TCONS_00022324 ID=TCONS_00022324|Name=TCONS_00022324|organism=Clytia hemisphaerica|type=CDS|length=4890bp|location=Sequence derived from alignment at sc0000411:68771..74330- (Clytia hemisphaerica)
GGCGAACAGGCTAACGAGAAGAAGGAAGAGAAGATATGGAGATATGGAGA
TGAAGTACACCACCAACATCTCGATAAACAATGGTTTGAAGGCCATCTCA
TCCAATTCAAAAATGTGGACCCTTCAGACCAACTCTTCTTCGTGTGTGGC
TCCACACTGTTCAACAATGCCATGAAACAGTTAGTTAGAGAAATGTTCAA
AGTCACAGATGAAAGAATAGTGACGTTTTCTTGATGTCAACAGTTGGTTA
TGTTAGCTGGAGGGACTGGTATCACACCTATGATACAATTTGCGGACCAG
ATTCTGTCGAATGAAGATAGTGAGACGAGAATCTTGTTGTGTTACAGTGC
CCATGATGCAGACGAAATCATCCAAAAAGAACGATTCGATCGGTGGAAAG
ACTTCTGGAATTTCAAAATTCATTACTTCATTACCATATACGAAGAAGGG
GCGATGTCACGAAGTATGAAGACATGGAAGATTGGATCGTCTGTCGATTG
GAGAGGTCCTTTTGGTCATTTACATACAGTCCATGAAAAGATGTACAGAT
AAAAATGATGTTTCAATCGTAAGACCTTACACACCGGTCAGTGCTCCACA
TCAACGTGGTTCGTTCCAAGTCGCCGTCAAGATGACGGACCGGAACGAGG
ATTCTTCTAAAGAAGAACACCATGGTGGTGCGTTGTATCCATGCCAACCA
ACCAAACCACGTGATGAAGATTGCTGCGGTAACGGCTGCTCAACATGTGT
GTTCGACCTCTACGAGTTGCAACTTTCAAGATGGCGGCAAAGGTGTCAAC
GAATAGATGAGCAGAATGACGAGGAGGATATTGAAAAGGATGAAATCATA
TCCATTTTTGAATATCGATCCTTTCGATTAATCGATATCATCGATCATTC
TCCGATACTTTATTTCACTTTCGAAATCCCCAACAATAAAAAGTTACCTA
TGGCTCGTGGACAACACTTGGTGGCAAGGGCGAACAGGCTAACGAGAAGA
AGGAAGAGAAGATATGGAGATATGGAGATGAAGTACACCACCAACATCTC
GATAAACAATGGTTTGAAGGCCATCTCATCCAATTCAAAAATGTGGACCC
TTCAGACCAACTCTTCTTCGTGTGTGGCTCCACACTGTTCAACAATGCCA
TGAAACAGTTAGTTAGAGAAATGTTCAAAGTCACAGATGAAAGAATAGTG
ACGTTTTCTTGATGTCAACAGTTGGTTATGTTAGCTGGAGGGACTGGTAT
CACACCTATGATACAATTTGCGGACCAGATTCTGTCGAATGAAGATAGTG
AGACGAGAATCTTGTTGTGTTACAGTGCCCATGATGCAGACGAAATCATC
CAAAAAGAACGATTCGATCGGTGGAAAGACTTCTGGAATTTCAAAATTCA
TTACTTCATTACCATATACGAAGAAGGGGCGATGTCACGAAGTATGAAGA
CATGGAAGATTGGATCGTCTGTCGATTGGAGAGGTCCTTTTGGTCATTTA
CATACAGTCCATGAAAAGATGTACAGATAAAAATGATGTTTCAATCGTAA
GACCTTACACACCGGTCAGTGCTCCACATCAACGTGGTTCGTTCCAAGTC
GCCGTCAAGATGACGGACCGGAACGAGGATTCTTCTAAAGAAGAACACCA
TGGTGGTGCGTTGTATCCATGCCAACCAACCAAACCACGTGATGAAGATT
GCTGCGGTAACGGCTGCTCAACATGTGTGTTCGACCTCTACGAGTTGCAA
CTTTCAAGATGGCGGCAAAGGTGTCAACGAATAGATGAGCAGAATGACGA
GGAGGATATTGAAAAGGATGAAATCATATCCATTTTTGAATATCGATCCT
TTCGATTAATCGATATCATCGATCATTCTCCGATACTTTATTTCACTTTC
GAAATCCCCAACAATAAAAAGTTACCTATGGCTCGTGGACAACACTTGGT
GGCAAGGGCGAACAGGCTAACGAGAAGAAGGAAGAGAAGATATGGAGATA
TGGAGATGAAGTACACCACCAACATCTCGATAAACAATGGTTTGAAGGCC
ATCTCATCCAATTCAAAAATGTGGACCCTTCAGACCAACTCTTCTTCGTG
TGTGGCTCCACACTGTTCAACAATGCCATGAAACAGTTAGTTAGAGAAAT
GTTCAAAGTCACAGATGAAAGAATAGTGACGTTTTCTTGATGTCAACAGT
TGGTTATGTTAGCTGGAGGGACTGGTATCACACCTATGATACAATTTGCG
GACCAGATTCTGTCGAATGAAGATAGTGAGACGAGAATCTTGTTGTGTTA
CAGTGCCCATGATGCAGACGAAATCATCCAAAAAGAACGATTCGATCGGT
GGAAAGACTTCTGGAATTTCAAAATTCATTACTTCATTACCATATACGAA
GAAGGGGCGATGTCACGAAGTATGAAGACATGGAAGATTGGATCGTCTGT
CGATTGGAGAGGTCCTTTTGGTCATTTACATACAGTCCATGAAAAGATGT
ACAGATAAAAATGATGTTTCAATCGTAAGACCTTACACACCGGTCAGTGC
TCCACATCAACGTGGTTCGTTCCAAGTCGCCGTCAAGATGACGGACCGGA
ACGAGGATTCTTCTAAAGAAGAACACCATGGTGGTGCGTTGTATCCATGC
CAACCAACCAAACCACGTGATGAAGATTGCTGCGGTAACGGCTGCTCAAC
ATGTGTGTTCGACCTCTACGAGTTGCAACTTTCAAGATGGCGGCAAAGGT
GTCAACGAATAGATGAGCAGAATGACGAGGAGGATATTGAAAAGGATGAA
ATCATATCCATTTTTGAATATCGATCCTTTCGATTAATCGATATCATCGA
TCATTCTCCGATACTTTATTTCACTTTCGAAATCCCCAACAATAAAAAGT
TACCTATGGCTCGTGGACAACACTTGGTGGCAAGGGCGAACAGGCTAACG
AGAAGAAGGAAGAGAAGATATGGAGATATGGAGATGAAGTACACCACCAA
CATCTCGATAAACAATGGTTTGAAGGCCATCTCATCCAATTCAAAAATGT
GGACCCTTCAGACCAACTCTTCTTCGTGTGTGGCTCCACACTGTTCAACA
ATGCCATGAAACAGTTAGTTAGAGAAATGTTCAAAGTCACAGATGAAAGA
ATAGTGACGTTTTCTTGATGTCAACAGTTGGTTATGTTAGCTGGAGGGAC
TGGTATCACACCTATGATACAATTTGCGGACCAGATTCTGTCGAATGAAG
ATAGTGAGACGAGAATCTTGTTGTGTTACAGTGCCCATGATGCAGACGAA
ATCATCCAAAAAGAACGATTCGATCGGTGGAAAGACTTCTGGAATTTCAA
AATTCATTACTTCATTACCATATACGAAGAAGGGGCGATGTCACGAAGTA
TGAAGACATGGAAGATTGGATCGTCTGTCGATTGGAGAGGTCCTTTTGGT
CATTTACATACAGTCCATGAAAAGATGTACAGATAAAAATGATGTTTCAA
TCGTAAGACCTTACACACCGGTCAGTGCTCCACATCAACGTGGTTCGTTC
CAAGTCGCCGTCAAGATGACGGACCGGAACGAGGATTCTTCTAAAGAAGA
ACACCATGGTGGTGCGTTGTATCCATGCCAACCAACCAAACCACGTGATG
AAGATTGCTGCGGTAACGGCTGCTCAACATGTGTGTTCGACCTCTACGAG
TTGCAACTTTCAAGATGGCGGCAAAGGTGTCAACGAATAGATGAGCAGAA
TGACGAGGAGGATATTGAAAAGGATGAAATCATATCCATTTTTGAATATC
GATCCTTTCGATTAATCGATATCATCGATCATTCTCCGATACTTTATTTC
ACTTTCGAAATCCCCAACAATAAAAAGTTACCTATGGCTCGTGGACAACA
CTTGGTGGCAAGGGCGAACAGGCTAACGAGAAGAAGGAAGAGAAGATATG
GAGATATGGAGATGAAGTACACCACCAACATCTCGATAAACAATGGTTTG
AAGGCCATCTCATCCAATTCAAAAATGTGGACCCTTCAGACCAACTCTTC
TTCGTGTGTGGCTCCACACTGTTCAACAATGCCATGAAACAGTTAGTTAG
AGAAATGTTCAAAGTCACAGATGAAAGAATAGTGACGTTTTCTTGATGTC
AACAGTTGGTTATGTTAGCTGGAGGGACTGGTATCACACCTATGATACAA
TTTGCGGACCAGATTCTGTCGAATGAAGATAGTGAGACGAGAATCTTGTT
GTGTTACAGTGCCCATGATGCAGACGAAATCATCCAAAAAGAACGATTCG
ATCGGTGGAAAGACTTCTGGAATTTCAAAATTCATTACTTCATTACCATA
TACGAAGAAGGGGCGATGTCACGAAGTATGAAGACATGGAAGATTGGATC
GTCTGTCGATTGGAGAGGTCCTTTTGGTCATTTACATACAGTCCATGAAA
AGATGTACAGATAAAAATGATGTTTCAATCGTAAGACCTTACACACCGGT
CAGTGCTCCACATCAACGTGGTTCGTTCCAAGTCGCCGTCAAGATGACGG
ACCGGAACGAGGATTCTTCTAAAGAAGAACACCATGGTGGTGCGTTGTAT
CCATGCCAACCAACCAAACCACGTGATGAAGATTGCTGCGGTAACGGCTG
CTCAACATGTGTGTTCGACCTCTACGAGTTGCAACTTTCAAGATGGCGGC
AAAGGTGTCAACGAATAGATGAGCAGAATGACGAGGAGGATATTGAAAAG
GATGAAATCATATCCATTTTTGAATATCGATCCTTTCGATTAATCGATAT
CATCGATCATTCTCCGATACTTTATTTCACTTTCGAAATCCCCAACAATA
AAAAGTTACCTATGGCTCGTGGACAACACTTGGTGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012519XLOC_012519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022324-exon-sc0000411-1575043694:73903..74330TCONS_00022324-exon-sc0000411-1575043694:73903..74330Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1575043694:72686..72776TCONS_00022324-exon-sc0000411-1575043694:72686..72776Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1575043694:72291..72395TCONS_00022324-exon-sc0000411-1575043694:72291..72395Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1575043694:71719..71919TCONS_00022324-exon-sc0000411-1575043694:71719..71919Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1575043694:68771..71436TCONS_00022324-exon-sc0000411-1575043694:68771..71436Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1510915933:73903..74330TCONS_00022324-exon-sc0000411-1510915933:73903..74330Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1510915933:72686..72776TCONS_00022324-exon-sc0000411-1510915933:72686..72776Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1510915933:72291..72395TCONS_00022324-exon-sc0000411-1510915933:72291..72395Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1510915933:71719..71919TCONS_00022324-exon-sc0000411-1510915933:71719..71919Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1510915933:68771..71436TCONS_00022324-exon-sc0000411-1510915933:68771..71436Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1491911889:73903..74330TCONS_00022324-exon-sc0000411-1491911889:73903..74330Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1491911889:72686..72776TCONS_00022324-exon-sc0000411-1491911889:72686..72776Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1491911889:72291..72395TCONS_00022324-exon-sc0000411-1491911889:72291..72395Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1491911889:71719..71919TCONS_00022324-exon-sc0000411-1491911889:71719..71919Clytia hemisphaericaexon
TCONS_00022324-exon-sc0000411-1491911889:68771..71436TCONS_00022324-exon-sc0000411-1491911889:68771..71436Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022324-proteinTCONS_00022324-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:68771..74330 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43697	1.17084	0.992932	0.907958	6.75474	5.76355	6.51609	6.92116	4.32374	4.13794	4.06042	3.40341	2.38527	2.13184	2.77763	3.31024	8.04432	8.08784	1.41796	2.04016	3.67075	4.30407	2.75886	2.61064	5.46015	5.51875	1.93234	1.12656	2.21772	1.98096
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001709Flavoprot_Pyr_Nucl_cyt_Rdtase
IPR001834NADH-Cyt_B5_reductase
IPR001433OxRdtase_FAD/NAD-bd
IPR008333OxRdtase_FAD-bd_dom
IPR019180Oxidoreductase-like_N
IPR017927Fd_Rdtase_FAD-bd
IPR017938Riboflavin_synthase-like_b-brl
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00022324 vs. Swiss-Prot (Human)
Match: NB5R5 (NADH-cytochrome b5 reductase-like OS=Homo sapiens GN=CYB5RL PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.732e-32
Identity = 89/286 (31.12%), Postives = 139/286 (48.60%), Query Frame = 1 
Query:  145 QPTKPRDEDCCGNGCSTCVFDLYELQLSRWR--QRCQRXXXXXXXXXXXXXXXXXXXXYRSFRLIDIIDHSPILY-FTFEIPNNKKLPMARGQHLVARCTDKNDVSIVRPYTPVSAPHQRGSFQVAVKIYEEGAMSRSMKTWKIGSSVDWRGPFGHLHTVHEKCQQLVMLAGGTGITPMIQFADQILSNEDSETRILLCYSAHDADEIIQKERFDRWKDFWNFKIHYFITGEQANEKKEEKIWRYGDEVHHQHLDKQWFEGHLIQFKNVDPSDQLFFVCGSTLFNN 993
            +PT+P    CCG+GCS CVFDLY   L+RW   Q  +        E       ++   + +F +I +   +   Y   F +P N +L +  GQHL+ R    +D+ I R YTP+S  +  G F+V +K Y+ G MSR +++W++G +  WRGPFG       +  +L++LA GTG+ PM+     I  NE+ ET + L       + I  K        FWN +  + ++ E ++E+     W Y ++ H  HL +   +  L+      P      VCGS  F  
Sbjct:   19 RPTEPLPSQCCGSGCSPCVFDLYHRDLARWEAAQASKDRSLLRGPESQSCPSKLNPETFVAFCIIAMDRLTKDTYRVRFALPGNSQLGLRPGQHLILRGI-VDDLEIQRAYTPISPANAEGYFEVLIKCYQMGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLP---WSYQEKTHFGHLGQDLIK-ELVSCCRRKP---FALVCGSAEFTK 296
The following BLAST results are available for this feature:
BLAST of TCONS_00022324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NB5R51.732e-3231.12NADH-cytochrome b5 reductase-like OS=Homo sapiens ... [more]
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