TCONS_00022321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022321
Unique NameTCONS_00022321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1083

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022321 ID=TCONS_00022321|Name=TCONS_00022321|organism=Clytia hemisphaerica|type=transcript|length=1083bp
CATAGATTATAGTTTATGGATTGAGTAAAAGATGTGTCACCATCCTACAA
GAATTGGCAGGCATTTCCAATGTGACAGGATTTTTTTAGTTCTAATCTGC
GGCATatctttgtttatatttcagtctcaaaagaaaaatgttgcAAAGAA
GCAGAGCAGTTCTTGAAGAAGCCACAAAACATCTTTCGAGAGAAGGGCTT
TATTCTCGGCTATTTTCCACCACCAATTATCCATTTCAAAAGCAGGATAA
TCCTCAAAGTCCAGAAAAAGCGAGTTCCATTTATGGTTTTTCTGCATTGG
ATATCGATGGTAATATAGTGAATCTTTCCAAATACAATGGATTGGTCACC
TACTTTGTTAATGTTGCTTCAGAATGAGGCTTGACGAAGACCAATTATGC
TCAAATGATCGAATTACAAAAGCGATATGGTGAGCAAGGTCTTCGTGTAC
TCGCATTCCCATGCAATCAATTTAATGCACAGGAACCAGGTNCTTCAGAA
TGAGGCTTGACGAAGACCAATTATGCTCAAATGATCGAATTACAAAAGCG
ATATGGTGAGCAAGGTCTTCGTGTACTCGCATTCCCATGCAATCAATTTA
ATGGACAGGAACCAGGCGACAACAAACAAATCAAAGAGTTTGCTGCCAAT
AAAGGGTGTAATTTTGATATGTTCAGCAAAATTAATGTGAATGGTGCTGG
AGCACAtcctttgtttatttatttgaaaagtaaacaacaTGGCATGTTGA
CGAATGACATTAAATggaacttttccaaatttctgTGCAATCGACATGGT
GTACCAGTGAAACGCTACTCTCCAACTGATACTCCTTTGAACGCCGAAAA
TGATATCAAAGCTGAACTTAATAAGCAATGATTTCGTAATAAGGCCAAAT
GGTTTTTGGAAAGGAGAAAAACTTgatatgaattattttttaaaagataa
cctcaatgaattatttttttgtttattccaTTGCTTCTTTTTTGCTACTG
CTTATGATGGTAAAACTCTAAATTCAATTTCTCTTGGTTgagttttattt
gatgtttataTTGCAGTTAAGCAAAATTGTTAA
Run BLAST on NCBI

transcript from alignment at sc0000411:56135..57217-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022321 ID=TCONS_00022321|Name=TCONS_00022321|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at sc0000411:56135..57217- (Clytia hemisphaerica)
CATAGATTATAGTTTATGGATTGAGTAAAAGATGTGTCACCATCCTACAA
GAATTGGCAGGCATTTCCAATGTGACAGGATTTTTTTAGTTCTAATCTGC
GGCATATCTTTGTTTATATTTCAGTCTCAAAAGAAAAATGTTGCAAAGAA
GCAGAGCAGTTCTTGAAGAAGCCACAAAACATCTTTCGAGAGAAGGGCTT
TATTCTCGGCTATTTTCCACCACCAATTATCCATTTCAAAAGCAGGATAA
TCCTCAAAGTCCAGAAAAAGCGAGTTCCATTTATGGTTTTTCTGCATTGG
ATATCGATGGTAATATAGTGAATCTTTCCAAATACAATGGATTGGTCACC
TACTTTGTTAATGTTGCTTCAGAATGAGGCTTGACGAAGACCAATTATGC
TCAAATGATCGAATTACAAAAGCGATATGGTGAGCAAGGTCTTCGTGTAC
TCGCATTCCCATGCAATCAATTTAATGCACAGGAACCAGGTNCTTCAGAA
TGAGGCTTGACGAAGACCAATTATGCTCAAATGATCGAATTACAAAAGCG
ATATGGTGAGCAAGGTCTTCGTGTACTCGCATTCCCATGCAATCAATTTA
ATGGACAGGAACCAGGCGACAACAAACAAATCAAAGAGTTTGCTGCCAAT
AAAGGGTGTAATTTTGATATGTTCAGCAAAATTAATGTGAATGGTGCTGG
AGCACATCCTTTGTTTATTTATTTGAAAAGTAAACAACATGGCATGTTGA
CGAATGACATTAAATGGAACTTTTCCAAATTTCTGTGCAATCGACATGGT
GTACCAGTGAAACGCTACTCTCCAACTGATACTCCTTTGAACGCCGAAAA
TGATATCAAAGCTGAACTTAATAAGCAATGATTTCGTAATAAGGCCAAAT
GGTTTTTGGAAAGGAGAAAAACTTGATATGAATTATTTTTTAAAAGATAA
CCTCAATGAATTATTTTTTTGTTTATTCCATTGCTTCTTTTTTGCTACTG
CTTATGATGGTAAAACTCTAAATTCAATTTCTCTTGGTTGAGTTTTATTT
GATGTTTATATTGCAGTTAAGCAAAATTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012518XLOC_012518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022321-exon-sc0000411-1575043694:56135..57217TCONS_00022321-exon-sc0000411-1575043694:56135..57217Clytia hemisphaericaexon
TCONS_00022321-exon-sc0000411-1510915933:56135..57217TCONS_00022321-exon-sc0000411-1510915933:56135..57217Clytia hemisphaericaexon
TCONS_00022321-exon-sc0000411-1491911889:56135..57217TCONS_00022321-exon-sc0000411-1491911889:56135..57217Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:56135..57217 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.94349	3.69897	1.42657	1.47453	3.13272	3.74084	6.1332	6.13895	11.3632	6.75904	11.3944	11.3422	10.0601	15.5904	2.88332	3.47527	5.50239	6.39654	1.02862	1.15944	3.52471	2.00843	2.81112	3.4557	15.6855	16.5105	4.28293	3.26839	1.5938	2.00254
Blast
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BLAST of TCONS_00022321 vs. Swiss-Prot (Human)
Match: GPX4 (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 1.246e-45
Identity = 88/198 (44.44%), Postives = 110/198 (55.56%), Query Frame = 3 
Query:  270 ASSIYGFSALDIDGNIVNLSKYNGLVTYFVNVASE*GLTKTNYAQMIELQKRYGEQGLRVLAFPCNQFNAQEPGXSE*GLTKTNYAQMIELQKRYGEQGLRVLAFPCNQFNGQEPGDNKQIKEFAANKGCNFDMFSKINVNGAGAHPLFIYLK--SKQHGMLTNDIKWNFSKFLCNRHGVPVKRYSPTDTPLNAENDI 857
            A S++ FSA DIDG++VNL KY G V    NVAS+ G T+                                           NY Q+++L  RY E GLR+LAFPCNQF  QEPG N++IKEFAA     FDMFSKI VNG  AHPL+ ++K   K  G+L N IKWNF+KFL +++G  VKRY P + PL  E D+
Sbjct:   38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEV------------------------------------------NYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
The following BLAST results are available for this feature:
BLAST of TCONS_00022321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPX41.246e-4544.44Phospholipid hydroperoxide glutathione peroxidase,... [more]
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