TCONS_00022311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022311
Unique NameTCONS_00022311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1157

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022311 ID=TCONS_00022311|Name=TCONS_00022311|organism=Clytia hemisphaerica|type=transcript|length=1157bp
CTGAACGTGGTGCAAATAAGAAAGAGAAAGGAGGGGCTGGTAAGAACAAG
AAGAACATTTATGGAGGGAAAAAGAAGAAGGGGCGAGATGAAGATGACTT
CAAACAAGATtctgatgaagaagaagaagcagaCATGCTCGAATCCAAAG
AAGTCGATTACATGTCCGAAAGCTCTTCCGAGGACGAGTTGAAGGAGATG
GACGATGAACCGGACCCTGAGAAAGCGTCCACCAAGCAGAAAGCGAAAGA
CGACTTGAACTTATTCTCCGATACTTCTTCTGAAGACGAAGACgatgaag
aagaagataaaCAACTCAACCAAGCTGGAAAACAACTCAAAGCAATGCTT
AAGAGTGAATCAGGTGAACGAAGCTCTGATGAAGAAGACGATGACGAGGA
TATCGATGATCAATATTCAAAGAACGCCATGCTTATCCAAGGGAAGGATg
gtaaaaagaagaagaaaaacggCAGTAACAACGGATCGAAGCCAACAAGT
CGCTCCTCCACACCTGTTCAACATCAGAAAGATCAAGACTCCTCCACATC
GGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAGATGCTGGTTCAAAAC
GAGGTCACGACAGCTCATCAGTCCCTTCACCCGGATCGAAGAAACAAAAG
TTCAATTCATCCGTTTCATCGGGAGGGCGTTCCAACAGTCCGCTCACTGT
GCCCTCGTCCGCCGGAAACGATCGAAGCGCGTCACCGGCCGTCCGCTCGT
CTACACCTTCAGATGGACACAATATAACTGAAAGCGCTATAAGACGTTAT
CTCACGCACAAACCAATGACTACTGCGGATTTAATGCGAAAATTTAAACC
GAAAAAGACTGGATTAAGTAAAGAGCAGACCGTTAGTGCAattgccgcca
tcttgaaaaaaatacaacCCCACCAGGAGAAAATTGAAGGAAAATTGTAT
CTAtcgataaagaataaaaaatgaaacaaatcaTATTGTCCTTATTTAAT
TTTCGGGTCGAAAAGAATTTCAGAGCTTCAGAAATACAGCTTATGAAACT
TATCATTGGGACATTTGTGTGTTTTAAAACGTTTTGTAGTTGTAGTACTT
aagtttttatcttatttataattttttttttgaaaaataaggatTATTCT
AAAACAT
Run BLAST on NCBI

transcript from alignment at sc0000411:44119..47847-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022311 ID=TCONS_00022311|Name=TCONS_00022311|organism=Clytia hemisphaerica|type=transcript|length=3729bp|location=Sequence derived from alignment at sc0000411:44119..47847- (Clytia hemisphaerica)
CTGAACGTGGTGCAAATAAGAAAGGTTTGTCACTGTGTTATTGTTTTGAA
CGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTGTTTTGAACGTGG
TGTAAATAAAAAAGGTTTGTCACTGTGTTATTGATTTGAACGTGGTGCAA
ATAAAAAAGGTTTGTCACTGTGTTATTGCTTTGAACGTGGTGTAAATAAG
AAAGGTTTGTCACTGTGTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTGAACGTGGTGCAAATAA
GAAAAGTTTGTCACTGTGTTATTGTTTTGAACGTGGTGTAAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGAACGTGGTGTAAATAAGA
AAGGTTTGTCATTGTGTTATTGTTTTGAACGTGGTGCAAATAAGAAAAGT
TTGTCACTGTGTTATTGCTTTGAACGTGGTGCAACTAAAAAAGGTTTGTC
ACTGTGTTATTGTTTTGAACGTGTTGTAAATAAAAAAGGTTTGTCACTGT
GTTATTGCTTTGAACGTGGTGTAAATAAGAAAGGTTTGTCATTGTGTTAA
TGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGTGTTATTGCTT
TGAACGTGGTGCAACTAAAAAAGGTTTGTCACTGTGTTATTGTTTTGAAC
GTGTTGTAAATAAGAAAAGTTTGTCACTGTGTTATTGCTTTGAACGTGGT
GCAACTAAAAAAGGTTTGTCACTGTGTTATTGTTTTGAACGTGTTGTAAA
TAAGAAAAGTTTGTCACTGTGTTATTGCTTTGAATGTGGTGTAAATAAGA
AAGGTTTGTCACTGTGTTATTGCTTTGAATGTGGTGTAAATAAGAAATGT
TTGTCACTGTGTTATTGCTTTGAACGTGGTGCAAATAAGAAAAGTTTGTC
ACTGTATTATTGTTTTGAACGTGGTGCAAATAAGAAAAGTTTGTCACTGT
GTTATTGTTTTCGGAATCAGATGAGACTAAATATCCTTTATCATTCTGTG
GATAATCCACACTGTTTTAGATTGAATATCCATAAGTTTCATGATGAATT
GTTTATTTTAGAGAAAGGAGGGGCTGGTAAGAACAAGAAGAACATTTATG
GAGGGAAAAAGAAGAAGGGGCGAGATGAAGATGACTTCAAACAAGATTCT
GATGAAGAAGAAGAAGCAGACATGCTCGAATCCAAAGAAGTCGATTACAT
GTCCGAAAGCTCTTCCGGTATCTCTCTTTCACTTTTGCTTACATGGCCTG
TTCGTTAGCGTCCTGGTTGTATGTGCAGGTACACTTGGCCATATTGAAAT
CTTATTGATATCTTTAAAAACAAAAAAAGATACACACATTCTTCAATTCA
TACTTTCGTATATTGCTCATTTTATTTTCTTCAACGTTTGAGTTACGTAC
ATCTACTTGAGGTTTTTTAAAATCAATTTGACGTCGATTTAGCCTGAAAT
AAATCCTATGTTCCAAGTGGTTTCTTTAGACATTATTCTGTTTGTTTTTG
TGCAGAGGACGAGTTGAAGGAGATGGACGATGAACCGGACCCTGAGAAAG
CGTCCACCAAGCAGAAAGCGAAAGACGACTTGAACTTATTCTCCGATACT
TCTTCTGAAGACGAAGACGATGAAGAAGAAGATAAACAACTCAACCAAGC
TGGAAAACAACTCAAAGCAATGCTTAAGGTGATCCTTCTTACTACTCCCC
CTGTCTGCCCCTGTTGGAAAAGAAATCTGAAATTGACTTCACATATTCAA
CTATGGTATTTGTTTTCGTACGTCAGTTCTTTATAAAATCGCTTAAAATG
TATATCAAATTTTGTTTCCTCGTCGTACAATAAAGTGTTTATTTTTTTGT
GAGGACTTCTTTATGACAACACATCAATCATTGGTTTCATTTTTTCCACT
TCTCACATANAAATGTCTGAAAATGTACGTCAAATTTTGTTTCCTCATTT
TTTTTGTGAGGACTTCTGTAATGACTTCTGAAATGTACAACACATCAATT
ATTGGTTTCATTTTTTCCACTTCGCACATGCGCAGAGTGAATCAGGTGAA
CGAAGCTCTGATGAAGAAGACGATGACGAGGATATCGATGATCAATATTC
AAAGAACGCCATGCTTATCCAAGGTGAGTACTGCGCTTCATATTCAAAGT
TGATATCTGGTAGCAAATTATTGATACCTTCTCAATGCCATTGATCACGT
CTTCGTTCTGATTTCAATCATTTTATGTCAATTTTCTCGGCCAAATCAAT
ACAAAGTGCTGTATAAAATACCTTTAATGATACTACACGTTTTATCTTAT
TTGAAATGGTTAGCGGCCAAGAGTGTGATCAATTGATTTTCTTCTCTTTC
AGGGAAGGATGGTAAAAAGAAGAAGAAAAACGGCAGTAACAACGGATCGA
AGCCAACAAGTCGCTCCTCCACACCTGTTCAACATCAGAAAGATCAAGAC
TCCTCCACATCGGATACTCTTTCGCAAGCTGCCAAATCGCTCAAAGATGG
TATTTCATCTATTTTTATTTTTTCTGTTCGTTTCATATTAGCTTTAAATT
AATTGTTCTTCAATGTGAAATCTTTTTTATCCGTCTTCAATTCACCTTCA
CACTTTTCAGCTGGTTCAAAACGAGGTCACGACAGCTCATCAGTCCCTTC
ACCCGGATCGAAGAAACAAAAGTTCAATTCATCCGTTTCATCGGGAGGGC
GTTCCAACAGTCCGCTCACTGTGCCCTCGTCCGCCGGAAACGATCGAAGC
GCGTCACCGGCCGTCCGCTCGTCTACACCTTCAGATGGACACAATATAAC
TGAAAGCGCTATAAGACGTTATCTCACGCACAAACCAATGACTACTGCGG
ATTTAATGCGAAAATTTAAACCGAAAAAGACTGGATTAAGTAAAGAGCAG
ACCGTTAGTGCAATTGCCGCCATCTTGAAAAAAATACAACCCCACCAGGA
GAAAATTGAAGGAAAATTGTATCTATCGATAAAGAATAAAAAATGAAACA
AATCATATTGTCCTTATTTAATTTTCGGGTCGAAAAGAATTTCAGAGCTT
CAGAAATACAGCTTATGAAACTTATCATTGGGACATTTGTGTGTTTTAAA
ACGTTTTGTAGTTGTAGTACTTAAGTTTTTATCTTATTTATAATTTTTTT
TTTGAAAAATAAGGATTATTCTAAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012517XLOC_012517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022311-exon-sc0000411-1575043694:47824..47847TCONS_00022311-exon-sc0000411-1575043694:47824..47847Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1575043694:46081..46236TCONS_00022311-exon-sc0000411-1575043694:46081..46236Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1575043694:45620..45792TCONS_00022311-exon-sc0000411-1575043694:45620..45792Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1575043694:45175..45262TCONS_00022311-exon-sc0000411-1575043694:45175..45262Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1575043694:44799..44945TCONS_00022311-exon-sc0000411-1575043694:44799..44945Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1575043694:44119..44687TCONS_00022311-exon-sc0000411-1575043694:44119..44687Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1510915933:47824..47847TCONS_00022311-exon-sc0000411-1510915933:47824..47847Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1510915933:46081..46236TCONS_00022311-exon-sc0000411-1510915933:46081..46236Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1510915933:45620..45792TCONS_00022311-exon-sc0000411-1510915933:45620..45792Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1510915933:45175..45262TCONS_00022311-exon-sc0000411-1510915933:45175..45262Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1510915933:44799..44945TCONS_00022311-exon-sc0000411-1510915933:44799..44945Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1510915933:44119..44687TCONS_00022311-exon-sc0000411-1510915933:44119..44687Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1491911889:47824..47847TCONS_00022311-exon-sc0000411-1491911889:47824..47847Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1491911889:46081..46236TCONS_00022311-exon-sc0000411-1491911889:46081..46236Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1491911889:45620..45792TCONS_00022311-exon-sc0000411-1491911889:45620..45792Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1491911889:45175..45262TCONS_00022311-exon-sc0000411-1491911889:45175..45262Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1491911889:44799..44945TCONS_00022311-exon-sc0000411-1491911889:44799..44945Clytia hemisphaericaexon
TCONS_00022311-exon-sc0000411-1491911889:44119..44687TCONS_00022311-exon-sc0000411-1491911889:44119..44687Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:44119..47847 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215527	4.95766	5.01583	2.80009	1.89762	1.44548	1.84288	0.923556	2.87577	3.91277	1.21183	1.54792	2.87533	3.49664	2.4711	3.21486	3.14867	2.62198	2.03952	1.20015	2.48248	2.56784	4.59647	4.14499	0.409587	0	1.36396	2.94522	2.09883	3.57839
Blast
[Close]
BLAST of TCONS_00022311 vs. Swiss-Prot (Human)
Match: T2FA (General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.509e-18
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 3 
Query:  696 TVPSSAGNDRSASPAVRSSTPSDGH-NITESAIRRYLTHKPMTTADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIK 962
            T P S     +  P    +TP+ G   +TE A+RRYLT KPMTT DL++KF+ KKTGLS EQTV+ +A ILK++ P ++ I  K++ S+K
Sbjct:  427 TGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 516
The following BLAST results are available for this feature:
BLAST of TCONS_00022311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2FA2.509e-1847.78General transcription factor IIF subunit 1 OS=Homo... [more]
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