TCONS_00022292 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022292
Unique Name	TCONS_00022292
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	554

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000411:6374..12652+

transcript sequence

>TCONS_00022292 ID=TCONS_00022292|Name=TCONS_00022292|organism=Clytia hemisphaerica|type=transcript|length=554bp
TCATTTTTACATTTAGACTCCCTACACAAGCTGCACAATTTCATATCAAT
CAGGTACAGTGTAAGAAGCGCATGTTGTAAAAGATAAAATATGAAGTTGA
CATTGCTTTTTGTTGCAGCACTCATCTTTGCAGTCCAATGTGAGGCGAGA
TGGTCAAATAAGTTCATTCAAGATGAGAACCTTGATGATGAATACCAAGA
GAGAATGGACGTGATGAAccaaagaagaattgaagcaattGAAAATTATC
GCAAAGCATTTTTGGATGAAAGACGAAGAGAATTGAGaatgaaaaagttc
aaaaaattcAATGATGACATCCGCTCGGAAACGGAAAGAAAGAACGCTGA
AGCTCTTGAAGATGTGTACGAAGATAAATATTTCTCCTTAAACTCCAATG
TCAGAGGTTCAGTTTCGAAAAATGATAAACCCGAGGAAAACAAAAAGCCC
GAGGAAAACGAAAAACCCAAGGAAGACGAAAATCCCGAGGAAAAGAAAAT
ACCCATGGAAAACGAAAAGCCGGAGGAAAAGGAAAAACCCAAGGAAAACG
GAAA

Run BLAST on NCBI

transcript from alignment at sc0000411:6374..12652+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022292 ID=TCONS_00022292|Name=TCONS_00022292|organism=Clytia hemisphaerica|type=transcript|length=6279bp|location=Sequence derived from alignment at sc0000411:6374..12652+ (Clytia hemisphaerica)
TCATTTTTACATTTAGACTCCCTACACAAGCTGCACAATTTCATATCAAT
CAGGTACAGTGTAAGAAGCGCATGTTGTAAAAGATAAAATATGAAGTTGA
CATTGCTTTTTGTTGCAGCACTCATCTTTGCAGTCCAATGTACGTATATT
TTTTTACCTGTATGTAATATAGTGTTTGTTTCGAAACATTGACACACATT
TCAAAAATTAACTTTGgggaaaaatttataattctatcCTCTTTAAATTG
ACTTTAATAGACCCTTCTAGAAAATCTAATTTCGACCAGTTTTTTATTTG
GTACTCCAATAGTGGATTGGCGACCGCCCAAattaaagctctaaaggagg
cGGGCAATAGAATGAAAACTTTAAGGTAAAATCATGTTTTTCGACGACCC
AATCGGTCTTTAAACTAAGCTGTGGATAAAAACTGTAAGAATTTTATTGC
CCATGTCTGAATAACATTAATATCCCAAGCATCGAAGATGGAGAGCACAT
GTTAAGCTCAAGTAGATTGTACAATTTTCTATTTCCAGTTATTTAAAACT
CTTCTGAGACttataaaaattaatgaaacgTGTTTCCTTCAAAAGAAACC
GTGAATGCGTAAGTTGAAGGTCCGGGGTCTCGCCGTAGATGTTACGTTCT
GAGATTTCACTCTTTCCCCGAATCTTTTCTGCGTTTCTTATTCGTGATTT
gatttacacccctgtctcacagccccgatggaactttttcctcagtgggg
ctgaaatttcagagGTGTGGATTTCATTCAAGATCCTGGAGGattgtcat
ggttacttttgccTCACCGAATGCGCATTGAATGAAATCGGGATTTGTCT
TCGCAGTATGATATATATCTTTCCAACTAAATgcataatttcataatttt
catttgTTGCTTCTGTTATCGATATATCAGGTGAGGCGAGATGGTCAAAT
AAGTTCATTCAAGATGAGAACCTTGATGATGAATACCAAGAGAGAATGGA
CGTGATGAAccaaagaagaattgaagcaattGAAAATTATCGCAAAGCAT
TTTTGGATGAAAGACGAAGAGAATTGAGaatgaaaaagttcaaaaaattc
AATGGTAAACCATTTCTTTCATATTTAAATGTTTTTCAACTTGCTCAATA
CACCGTTTCGACCGTAATcgcactttattatttaattatccccctaaatt
cgatccaatctttttttacacctttttctattgtctaggtctataggtgc
gaaaaaaagactgggacggttttagggtggtaaaatggacaaaaaatgcc
cacgtggcaattggcggctacggtcgaaaaggtgtatactgTGGTTTTTT
CTATCATACAAGAATTTCCTTATTTTCTTTGCTCATTATGATTTTCAAAG
CTCTTTCAAGAGAAGAGGAGTTATGGTAGCACTTTCCTTCTTATGAGACC
CCCCTGGCTGATTCTGAGTAATTGATTTTGAGATTTCCTTAATTTNNNNN
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ggctttttaaatgtgcgttatacagctccgctataacatattcCTGGTGT
ATACGTATAAAAGAGTCAACGCATtgggtgtttttccactgacGGCTTGG
TAAGCTAACAGGATTAatgtaatttttgataaaacgaTGAATAGCCCAAA
CTATTCataatttttgaatgaaaagagatggttgcacgttaatttttttt
ttcagaaaatattcTATTTCCCAAAACACAGGAGAAAAACCGTTAAATCT
TTTGTATTTTGCACGCATTTTCTAATTCTCTAAATACATGGTCGAGGGCA
TGTATGAGAGAACAAAAGAGCGAAGATATAAGCGGATCAGGAAATACaaa
agattttcgatttttcctGTGTTGTTGGGggaaatgaaataatttttttt
aattgaacatAAAAATGGCCGTCAGTGGAAAAAACCCATGACTGTCACTT
TTAATCGATCCTCCTTGATTAAGAGTCGTTAGCCCTACTGTCTTAAGGTA
GGAGcaccctttaaaaaaaaacaaaagaagcaTAAACAAAGGATGCGTGc
aatgaacaaaaagttttgcGATTTCAAACTCAGATGACTTGGAGAAAAAG
AGTGTATTATTACACTGTTGCTTGAAAATTGCTTGtaaaatagaaacaaa
aaagtGNACTTTAAGGTAAAATCATGTTTTTCGACGACCCAATCGGTCTT
TAAACTAAGCTGTGGATAAAAACTGTAAGAATTTTATTGCCCATGTCTGA
ATAACATTAATATCCCAAGCATCGAAGATGGAGAGCACATGTTAAGCTCA
AGTAGATTGTACAATTTTCTATTTCCAGTTATTTAAAACTCTTCTGAGAC
ttataaaaattaatgaaacgTGTTTCCTTCAAAAGAAACCGTGAATGCGT
AAGTTGAAGGTCCGGGGTCTCGCCGTAGATGTTACGTTCTGAGATTTCAC
TCTTTCCCCGAATCTTTTCTGCGTTTCTTATTCGTGATTTgatttacacc
cctgtctcacagccccgatggaactttttcctcagtggggctgaaatttc
agagGTGTGGATTTCATTCAAGATCCTGGAGGattgtcatggttactttt
gccTCACCGAATGCGCATTGAATGAAATCGGGATTTGTCTTCGCAGTATG
ATATATATCTTTCCAACTAAATgcataatttcataattttcatttgTTGC
TTCTGTTATCGATATATCAGGTGAGGCGAGATGGTCAAATAAGTTCATTC
AAGATGAGAACCTTGATGATGAATACCAAGAGAGAATGGACGTGATGAAc
caaagaagaattgaagcaattGAAAATTATCGCAAAGCATTTTTGGATGA
AAGACGAAGAGAATTGAGaatgaaaaagttcaaaaaattcAATGGTAAAC
CATTTCTTTCATATTTAAATGTTTTTCAACTTGCTCAATACACCGTTTCG
ACCGTAATcgcactttattatttaattatccccctaaattcgatccaatc
tttttttacacctttttctattgtctaggtctataggtgcgaaaaaaaga
ctgggacggttttagggtggtaaaatggacaaaaaatgcccacgtggcaa
ttggcggctacggtcgaaaaggtgtatactgTGGTTTTTTCTATCATACA
AGAATTTCCTTATTTTCTTTGCTCATTATGATTTTCAAAGCTCTTTCAAG
AGAAGAGGAGTTATGGTAGCACTTTCCTTCTTATGAGACCCCCCTGGCTG
ATTCTGAGTAATTGATTTTGAGATTtccttaatttctttttttttcaaaa
ttttagaatatATATGCTGTAATATTTGTTTATTTAAGATGACATCCGCT
CGGAAACGGAAAGAAAGAACGCTGAAGCTCTTGAAGATGTGTACGAAGAT
AAATATTTCTCCTTAAACTCCAATGTCAGAGGTTCAGTTTCGAAAAATGA
TAAACCCGAGGAAAACAAAAAGCCCGAGGAAAACGAAAAACCCAAGGAAG
ACGAAAATCCCGAGGAAAAGAAAATACCCATGGAAAACGAAAAGCCGGAG
GAAAAGGAAAAACCCAAGGAAAACGGAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012506	XLOC_012506	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00022292-exon-sc0000411-1491911889:6374..6512	TCONS_00022292-exon-sc0000411-1491911889:6374..6512	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1510915933:6374..6512	TCONS_00022292-exon-sc0000411-1510915933:6374..6512	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1575043694:6374..6512	TCONS_00022292-exon-sc0000411-1575043694:6374..6512	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1491911889:11794..11967	TCONS_00022292-exon-sc0000411-1491911889:11794..11967	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1510915933:11794..11967	TCONS_00022292-exon-sc0000411-1510915933:11794..11967	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1575043694:11794..11967	TCONS_00022292-exon-sc0000411-1575043694:11794..11967	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1491911889:12412..12652	TCONS_00022292-exon-sc0000411-1491911889:12412..12652	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1510915933:12412..12652	TCONS_00022292-exon-sc0000411-1510915933:12412..12652	Clytia hemisphaerica	exon
TCONS_00022292-exon-sc0000411-1575043694:12412..12652	TCONS_00022292-exon-sc0000411-1575043694:12412..12652	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000411	supercontig	sc0000411:6374..12652 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.051417	0.242668	0.174651	0	0.0693387	0	0.198314	0	0.0684069	0.214676	0.104185	0.10273	0	0	0	0	0.601309	0.340006	0	0	96.7394	81.3496	166.282	243.65	172.643	73.245	50.5175	17.9949	1.35505	0.419501

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00022292 vs. Swiss-Prot (Human)

BLAST of TCONS_00022292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00022292 (transcript) - C. hemisphaerica