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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022273 ID=TCONS_00022273|Name=TCONS_00022273|organism=Clytia hemisphaerica|type=transcript|length=885bp
TTTCCAACAGAATCGTTTACTGAATGTGTCTTAAGATGTTCTCAAGATAG
TCAGCTAATCGGATCGCTCCAATCGAACATCTGTTATTGCTTGGAGAGGC
ATTGTATCCAAAACAAGACTGTAGAGGATGTAGAAATTTCGAATGATGga
gaaaaaaagatgaaaatttttgagaagtTTGATGAAAATGCGATGGAAAT
TACATCAGTGAAAGATAAAGcctCTTGGCAATTCTCGATCATTTCATCTC
CAAATCCCATAATTGCTATCCCAGGAGGTAACAGACAGCTCTTTCTAAAT
CGAATCAAATTAACATTGATCTTATCCATACAATTTCTTACCAACGATCC
TTcgatgaaattttttgatttcatttttggtACCCGTTTAAGGATTAAAT
TTCAGCGTGAAAGGTTAACTGTTTATTATAAGGGAAAGTCGATTATTTCT
CCAACGTTGCCTTCATCAATACCTAAAAATCAATGGAAACACTTTGCTGT
TACCATCAGAGATGTGGATGGAAAGATAACAGTTCAGTACTACGTTGATG
GAACTCTACTCGGACAATCTCAAACATCCTATAATGGATTGGCTGTTGAC
TTTTCTGGTCCGGTTAGTTTTCAATGCTACAATTGTCAATTTACTGGATT
GAATTTATTAAAGGGATTACTAACTGCAACTGAGATTTTGGATGTTGAAA
AAGATTATAACGCTCTTGAGGCATTGAATGCCGTAAGCGTGGTTCGTTGG
GATGATTTTAAACAAACTACTAATGAAAAGGAAATATCAATACATCAATA
TCCCTTTTAAAACATTTCCTGATTTTGGGTAAATAATaactttgaaataa
ttctgtatTATATCTGAAATCTTCTTATCAATTAT Run BLAST on NCBI protein sequence of TCONS_00022273-protein >TCONS_00022273-protein ID=TCONS_00022273-protein|Name=TCONS_00022273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
FPTESFTECVLRCSQDSQLIGSLQSNICYCLERHCIQNKTVEDVEISNDG
EKKMKIFEKFDENAMEITSVKDKASWQFSIISSPNPIIAIPGGNRQLFLN
RIKLTLILSIQFLTNDPSMKFFDFIFGTRLRIKFQRERLTVYYKGKSIIS
PTLPSSIPKNQWKHFAVTIRDVDGKITVQYYVDGTLLGQSQTSYNGLAVD
FSGPVSFQCYNCQFTGLNLLKGLLTATEILDVEKDYNALEALNAVSVVRW
DDFKQTTNEKEISIHQYPF Run BLAST on NCBI transcript from alignment at sc0000410:81908..83066- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022273 ID=TCONS_00022273|Name=TCONS_00022273|organism=Clytia hemisphaerica|type=transcript|length=1159bp|location=Sequence derived from alignment at sc0000410:81908..83066- (Clytia hemisphaerica)
TTTCCAACAGAATCGTTTACTGAATGTGTCTTAAGATGTTCTCAAGATAG
TCAGCTAATCGGATCGCTCCAATCGAACATCTGTTATTGCTTGGAGAGGC
ATTGTATCCAAAACAAGACTGTAGAGGATGTAGAAATTTCGAATGATGGA
GAAAAAAAGATGAAAATTTTTGAGAAGTTTGATGAAAATGCGATGGAAAT
TACATCAGTGAAAGATAAAGGTAATGTTTGCTTTGCTTTTTGTGGGGACT
TATATGTGACAGTTGTCGACGGCCAAGTTGCTCCCATAGCATAATATTTC
AACAAATGTCTTTCAAAAAGTGTTTCAGAGTGTTAAGGAAACTTTATTTC
AGGGCACATAAAACATGGGTTTAAGGTGAGTTATGGACCTTATGTATCTT
TCATTTCTTTAAGTGAAAAATTTACAATTTTGGATAACTGAATTAAATTT
GTCTTGATAAGAAGTTAGTATTTAGTCTATTTTCTTTTTTTCAGCCTCTT
GGCAATTCTCGATCATTTCATCTCCAAATCCCATAATTGCTATCCCAGGA
GGTAACAGACAGCTCTTTCTAAATCGAATCAAATTAACATTGATCTTATC
CATACAATTTCTTACCAACGATCCTTCGATGAAATTTTTTGATTTCATTT
TTGGTACCCGTTTAAGGATTAAATTTCAGCGTGAAAGGTTAACTGTTTAT
TATAAGGGAAAGTCGATTATTTCTCCAACGTTGCCTTCATCAATACCTAA
AAATCAATGGAAACACTTTGCTGTTACCATCAGAGATGTGGATGGAAAGA
TAACAGTTCAGTACTACGTTGATGGAACTCTACTCGGACAATCTCAAACA
TCCTATAATGGATTGGCTGTTGACTTTTCTGGTCCGGTTAGTTTTCAATG
CTACAATTGTCAATTTACTGGATTGAATTTATTAAAGGGATTACTAACTG
CAACTGAGATTTTGGATGTTGAAAAAGATTATAACGCTCTTGAGGCATTG
AATGCCGTAAGCGTGGTTCGTTGGGATGATTTTAAACAAACTACTAATGA
AAAGGAAATATCAATACATCAATATCCCTTTTAAAACATTTCCTGATTTT
GGGTAAATAATAACTTTGAAATAATTCTGTATTATATCTGAAATCTTCTT
ATCAATTAT Coding sequence (CDS) from alignment at sc0000410:81908..83066- >TCONS_00022273 ID=TCONS_00022273|Name=TCONS_00022273|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000410:81908..83066- (Clytia hemisphaerica)
CCTCTTGGCAATTCTCGATCATTTCATCTCCAAATCCCATAATTGCTATC
CCAGGAGGTAACAGACAGCTCTTTCTAAATCGAATCAAATTAACATTGAT
CTTATCCATACAATTTCTTACCAACGATCCTTCGATGAAATTTTTTGATT
TCATTTTTGGTACCCGTTTAAGGATTAAATTTCAGCGTGAAAGGTTAACT
GTTTATTATAAGGGAAAGTCGATTATTTCTCCAACGTTGCCTTCATCAAT
ACCTAAAAATCAATGGAAACACTTTGCTGTTACCATCAGAGATGTGGATG
GAAAGATAACAGTTCAGTACTACGTTGATGGAACTCTACTCGGACAATCT
CAAACATCCTATAATGGATTGGCTGTTGACTTTTCTGGTCCGGTTAGTTT
TCAATGCTACAATTGTCAATTTACTGGATTGAATTTATTAAAGGGATTAC
TAACTGCAACTGAGATTTTGGATGTTGAAAAAGATTATAACGCTCTTGAG
GCATTGAATGCCGTAAGCGTGGTTCGTTGGGATGATTTTAAACAAACTAC
TAATGAAAAGGAAATATCAATACATCAATATCCCTTTTAATTTCCAACAG
AATCGTTTACTGAATGTGTCTTAAGATGTTCTCAAGATAGTCAGCTAATC
GGATCGCTCCAATCGAACATCTGTTATTGCTTGGAGAGGCATTGTATCCA
AAACAAGACTGTAGAGGATGTAGAAATTTCGAATGATGGAGAAAAAAAGA
TGAAAATTTTTGAGAAGTTTGATGAAAATGCGATGGAAATTACATCAGTG
AAAGATAAAGCCTCTTGGCAATTCTCGATCATTTCATCTCCAAATCCCAT
AATTGCTATCCCAGGAGGTAACAGACAGCTCTTTCTAAATCGAATCAAAT
TAACATTGATCTTATCCATACAATTTCTTACCAACGATCCTTCGATGAAA
TTTTTTGATTTCATTTTTGGTACCCGTTTAAGGATTAAATTTCAGCGTGA
AAGGTTAACTGTTTATTATAAGGGAAAGTCGATTATTTCTCCAACGTTGC
CTTCATCAATACCTAAAAATCAATGGAAACACTTTGCTGTTACCATCAGA
GATGTGGATGGAAAGATAACAGTTCAGTACTACGTTGATGGAACTCTACT
CGGACAATCTCAAACATCCTATAATGGATTGGCTGTTGACTTTTCTGGTC
CGGTTAGTTTTCAATGCTACAATTGTCAATTTACTGGATTGAATTTATTA
AAGGGATTACTAACTGCAACTGAGATTTTGGATGTTGAAAAAGATTATAA
CGCTCTTGAGGCATTGAATGCCGTAAGCGTGGTTCGTTGGGATGATTTTA
AACAAACTACTAATGAAAAGGAAATATCAATACATCAATATCCCTTTTAA
TTTCCAACAGAATCGTTTACTGAATGTGTCTTAAGATGTTCTCAAGATAG
TCAGCTAATCGGATCGCTCCAATCGAACATCTGTTATTGCTTGGAGAGGC
ATTGTATCCAAAACAAGACTGTAGAGGATGTAGAAATTTCGAATGATGGA
GAAAAAAAGATGAAAATTTTTGAGAAGTTTGATGAAAATGCGATGGAAAT
TACATCAGTGAAAGATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022273-exon-sc0000410-1575043694:82847..83066 | TCONS_00022273-exon-sc0000410-1575043694:82847..83066 | Clytia hemisphaerica | exon |
| TCONS_00022273-exon-sc0000410-1575043694:81908..82572 | TCONS_00022273-exon-sc0000410-1575043694:81908..82572 | Clytia hemisphaerica | exon |
| TCONS_00022273-exon-sc0000410-1510915933:82847..83066 | TCONS_00022273-exon-sc0000410-1510915933:82847..83066 | Clytia hemisphaerica | exon |
| TCONS_00022273-exon-sc0000410-1510915933:81908..82572 | TCONS_00022273-exon-sc0000410-1510915933:81908..82572 | Clytia hemisphaerica | exon |
| TCONS_00022273-exon-sc0000410-1491911889:82847..83066 | TCONS_00022273-exon-sc0000410-1491911889:82847..83066 | Clytia hemisphaerica | exon |
| TCONS_00022273-exon-sc0000410-1491911889:81908..82572 | TCONS_00022273-exon-sc0000410-1491911889:81908..82572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:81908..83066 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013320 | ConA-like_dom |
Blast
The following BLAST results are available for this feature:
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