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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022241 ID=TCONS_00022241|Name=TCONS_00022241|organism=Clytia hemisphaerica|type=transcript|length=1134bpRun BLAST on NCBI protein sequence of TCONS_00022241-protein >TCONS_00022241-protein ID=TCONS_00022241-protein|Name=TCONS_00022241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp MPEETTSYVTDANITDIQKRKLPTKHYVYIINVLWNDGKKQVICRRYNAFRun BLAST on NCBI transcript from alignment at sc0000408:219894..232444- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022241 ID=TCONS_00022241|Name=TCONS_00022241|organism=Clytia hemisphaerica|type=transcript|length=12551bp|location=Sequence derived from alignment at sc0000408:219894..232444- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000408:219894..232444- >TCONS_00022241 ID=TCONS_00022241|Name=TCONS_00022241|organism=Clytia hemisphaerica|type=CDS|length=11154bp|location=Sequence derived from alignment at sc0000408:219894..232444- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022241 vs. Swiss-Prot (Human)
Match: SPD2A (SH3 and PX domain-containing protein 2A OS=Homo sapiens GN=SH3PXD2A PE=1 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 3.780e-73 Identity = 128/318 (40.25%), Postives = 189/318 (59.43%), Query Frame = 2
Query: 143 VTDANITDIQKRKLPTKHYVYIINVLWNDGKKQVICRRYNAFFELQTSLIDSYPTEAGVHNPTARVIPFLPGKVLFGRSNVREVALKRKDALNEYLEKLVKLPAKISQCKLVLDFLHANEEDVKN--------------LLSGGXXXXXXXXTADSISDPVLLEQYIVLTNFKSKQRNQVSLAAGDTVEVIEKHENGWWFVCIEDEQGWAPSSYLEPLEG---------SSSGEVEE------------------IDVQ-GREGRHICTKPFKSSMPDELNLEVGDVVDILAKCSDGWWKVTLSNSKQGYVPLNHLKK 970
V DA + D++KR+ P+KHYVYIINV W+D Q I RRY+ FF+LQ L+D +P E G +P R+IPFLPGK+LF RS++R+VA+KR ++EY LV+LP ISQC V F A EDV L S E +K AD+ ++P++LEQY+V++N+K ++ +++SL AG+ V+VIEK+E+GWWFV +EQGW P++YLE G S +GEV + ++ Q RE +++ +P+ S DE+ E G V+++ K +GWW + K+G+ P ++LKK
Sbjct: 6 VQDATVVDVEKRRNPSKHYVYIINVTWSDSTSQTIYRRYSKFFDLQMQLLDKFPIEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLKPIDEYCRALVRLPPHISQCDEVFRFFEARPEDVNPPKEDYGSSKRKSVWLSSWAESPKKDVTGADATAEPMILEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNGTRDDSDINTSKTGEVSKRRKAHLRRLDRRWTLGGMVNRQHSREEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLG-KEGWAPASYLKK 322 The following BLAST results are available for this feature:
BLAST of TCONS_00022241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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