TCONS_00022238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022238
Unique NameTCONS_00022238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022238 ID=TCONS_00022238|Name=TCONS_00022238|organism=Clytia hemisphaerica|type=transcript|length=1894bp
GTTTTTCGTCCGGccaaatttgtaaacaaatatggtagcCCTAATTCGGC
AAATTTCATCAGAGAGGCTGGATCGTCCCATATTTTTTGAGCATAtttct
tttgataaaagttCAGGACATTTATTGCTGgcaagaaaagttttttttaa
cttattttgatattttagatCATTAATATCGTATTGAAAGCAGAAACAAC
TGGAAACGTATATCAATAAAGCGAATTTCATACTAAAGCTTTAAACAACA
TCCATCCCGTTTGTTCTTGCATTGCTTGCTCTTTTTGTAGCTAGCAACAA
ACTCAAAATGAAGCTCTACATGTTCTTAGTAAGCATGTTCAACTGGGCAT
TGGGCTACTGCTATAAACCAGTTGTTATTGTACATGGTGTCATGAGTGAG
GCAGATCATCTTGAAGATATGAAACAAATGATTGAAAAACATCACCCAGG
AACAAACGTCACCCTTGTTCATCTCTATCCTGATATTGAAAGCTTCACAC
CACTTCAACGGCAGTTGAAATACTGGAAACAAAAGATTGAACCTCTGATG
AAAGAAGCTATTGATGGAATTCACTTTATTTGTCATTCTCAAGgtGGTCT
CATTTGCCAAGGATTAATtgaagaaactgaaaaacacAATGTTCACACCT
TCATTGCATTGAGTTCTCCCTTGAATGGCCAATTTGGTGTACCTAAATTT
GTTTCCAGCTACATTCCCTGGCTGAAaggagaaagagaaaaattatCTGG
GTTCATGTATTCGACGTTCACACAAGACACATTTGCTATCAGTAATTATT
GGAAAGATCCTAGAGAAGAGTATTATGAATCTTACTTAGATGAATCACGA
TATTTACCAATCCTTCATAATAATCCACAATCTCCACGAGCCGATGATAT
ggcgaaaagaaagaagaattttttagAATTGAAGAAGCTTGTTTTGATTG
GTGGACCTGATGATGGAGTCATTACACCTTGGCAATCTAGCTTATACGGA
TTTTATGATGAAGAATACAAAATCCAAGACATGAAACAACAAAAACTCTA
CCAAGAAGATTGGTTTGGATTGAGAACACTTTTTGAAAGAGGAGATGTAG
TGATGAGTTCCATCCTCGGTGTCAAACATATCGAATGGCATGGCAaccaa
aatgttttcaaaagctTCATCGAGCCATGGCTTATCTAGAAAATATCATC
CTTCACATCTAGATTTCCCCCTTATTTTTGAAACTTGGATTTGTCGTTAT
TTGGTGTTCCTGTTTATTTGTTTGGTGTAGTGATGTAAAAATGGGTCTGG
CGCTTGTATTGTGAACATATTCTATAAAATTTCATGTTATTTACATATCA
TTGCTTATTATTGTCGTATATATAACCTTATAATATACTCTGTCGTAACG
TATAACGTAAAACTTTCTATAACACTCGTAGAGATTTTTGTACGCTTTTT
TATAATCGCTAGAATTAGAATTGTCAAATTTTGgctaagaaaatattttg
tatgGTTTTGTTATTGGATTTTGATTTACGAAATTCTTAattgcaaaaaa
tatcaaaaaaggaacaaaaacttataaATTATTATGCAGCTATTGATCTT
GCCCCTAATACTGTCCCCATGTATCAAACGGTCCAACATTAACTccaagt
caataaaaaaaatatatctacaaatcaaaactataaatcATCAATTTATC
TACAGTTAAAAAACAATCATCAAAGATTCTTCTCTTAAGTCAGCCAAGGA
TATACAGCTAACTTAAGCACAAAATCGGAGCCAGGCCAAGAGTCATGGTC
GATTCCAGGGATGACATATGACGTCACTCGCCCTTGGTCGTTTTGTGTTT
TTAAGCCGAACCAATCGTCTTGGTACATCTATGATCGAATGAAA
Run BLAST on NCBI

transcript from alignment at sc0000408:210350..216107-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022238 ID=TCONS_00022238|Name=TCONS_00022238|organism=Clytia hemisphaerica|type=transcript|length=5758bp|location=Sequence derived from alignment at sc0000408:210350..216107- (Clytia hemisphaerica)
GTTTTTCGTCCGGCCAAATTTGTAAACAAATATGGTAGCCCTAATTCGGC
AAATTTCATCAGAGAGGCTGGATCGTCCCATATTTTTTGAGCATATTTCT
TTTGATAAAAGTTCAGGACATTTATTGCTGGCAAGAAAAGTTTTTTTTAA
CTTATTTTGATATTTTAGATCATTAATATCGTATTGAAAGCAGAAACAAC
TGGAAACGTATATCAATAAAGCGAATTTCATACTAAAGCTTTAAACAACA
TCCATCCCGTTTGTTCTTGCATTGCTTGCTCTTTTTGTAGCTAGCAACAA
ACTCAAAATGAAGCTCTACATGTTCTTAGTAAGCATGTTCAACTGGGCAT
TGGGCTACTGCTATAAACCAGTTGTTATTGTACATGGTGTCATGAGTGAG
GCAGATCATCTTGAAGATATGAAACAAATGATTGAAAAACATCACCCAGG
AACAAACGTCACCCTTGTTCATCTCTATCCTGATATTGAAAGCTTCACAC
CACTTCAACGGCAGTTGAAATACTGGAAACAAAAGATTGAACCTCTGATG
AAAGAAGCTATTGATGGAATTCACTTTATTTGTCATTCTCAAGGTATTTT
TAGTTAATCAAAGTTCTAGATTTTTTGGTCTTTTTAATGGATTGCATATA
ATTTGTTAAGACACCCCCCCCCCCCACTNNNNNNNNNGTATAACTGCTCT
AACTTGGGACTATGATATGGAAAAAAAATATGTAGTGGAGCACACACGAG
TGTCTTTGCACTCTAAGAGGAACAAAGAAGTATGATTGATAAACTTGGTG
GAGTTATCAAAAAAAGTTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAA
TACAGGCCAGATATCCCAAGTTAGAGTAGTCGACGGTAAGTTGATAAAGC
CATTCTAAACATTCAAAATTTTCATCAAAATTCATACAGTTACATCAAAA
TGCCTCGAAAATGTCAATATGAAAATTGCGTAATCAGAGAACGTATGTCT
CGCTCATTATAAAAAGGCAGAGACAAACTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTCTATTCAGGTTGATTTTTTATGACTTCTAATGGTACTT
TTTCTAACGAGTTTGATTACTCTGTTCTCACACTTATGTCTTTTTTTTTC
GAGTCCTTTTCCGTGATTACTTTTATTTATATTTTTAAAGACAGGTAAGA
AGGCATATTGATGTAACTGTCATAGCAAGCTTGCATGCATCATCATGACC
AACCATGTTTTCTTTGAGACTGAACTCTTGTTTTTCTTTTTCATTATTCA
TGTTGTTAAAAACCTTATCTACACTAAAAGTAGAGAATTACCCTTTTTTT
GTTATGGAATTTCTCAACATCGTGTAAACCAGACTTTATGGCTGTAACGA
AGTGCGCGCATGCGAGAATGTAGCGAGAATGGGACTTTGGGCCTGATGTT
ACTTAAATTTATAGAAATATATAAATAGAGGGGCCTAGGTATTATGATTT
GAGAATGCAAATGGCTTTAGGAAGAACAGGTAGTTAACCAAAACATAAGA
TCTCAAAAACTAGACTGTGAAATAGTTTACAGCCTGGATATCCAGGCTAC
GTTGATATTAGAATGACTTGAAAAACTTTCAAAGTTTCGTATATTTTTAA
GGCCTTGTTTTTGGTTTGGGAAGAAATGGAAAATGTTGAATTCATTTGCA
CTAAAATGAGAAGAACGATTCAACTGATATAATCTATAAATCTAGTGCAG
CATAAAAATCACAAAATTGATTCCAATATTTTTCCAATTTTAGGTGGTCT
CATTTGCCAAGGATTAATTGAAGAAACTGAAAAACACAATGTTCACACCT
TCATTGCATTGAGTTCTCCCTTGAATGGCCAATTTGGTGTACCTAAATTT
GTTTCCAGCTACATTCCCTGGCTGAAAGGAGAAAGAGAAAAATTATCTGG
GTATGCCTTTTTTCCGTTAAAAAACAGATGTAGTTTCTGTAACAGATTAA
TCCAATTTTGTCAATATTCAAAATGATGACTGAATTTGGAAAATTATCAA
AGTCTGCCTGGGGAAAAAAGCATTTTGGTCCGACTGATAGAATGAATGAG
TTTATTTTCTTGTTTAGGTTCATGTATTCGACGTTCACACAAGACACATT
TGCTATCAGTAATTATTGGAAAGGTATAAAGCTTCTTGTGATCTTTTTTG
ATGTTCTACTTCTTTTCCTCTCCAAACCTTTTTAAGAAACAGCATTCAAT
CAGTAATATGTAAAAAACCTAATTGATAGAGTGATTGAATTTCTCTTTAG
ATCCTAGAGAAGAGTATTATGAATCTTACTTAGATGAATCACGATATTTA
CCAATCCTTCATAATAATCCACAATCTCCACGAGCCGATGGTATGTAAAA
TAATCAGAAAAATTATTTTTGAAATTTTGACATTCCAAAAGTTAAATTTA
AAGAAAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTGGGTATGCCTTTTTT
CCGTTAAAAAACAGATGTAGTTTCTGTAACAGATTAATCCAATTTTGTCA
ATATTCAAAATGATGACTGAATTTGGAAAATTATCAAAGTCTGCCTGGGG
AAAATAGCATTTTGGTCCGACTGATAGAATGAATGAGTTTATTTTCTTGT
TTAGGTTCATGTATTCGACGTTCACACAAGACACATTTGCTATCAGTAAT
TATTGGAAAGGTATAAAGCTTCTTGTGATCTTTTTTGATGTTCTACTTCT
TTTCCTCTCCAAACCTTTTTAAGAAACAGCATTCAATCAGTAATATGTAA
AAAACCTAATTGATAGAGTGATTGAATTTCTCTTTAGATCCTAGAGAAGA
GTATTATGAATCTTACTTAGATGAATCACGATATTTACCGATCCTTCATA
ATAATCCACAATCTCCACGAGCCGATGGTATGTAAAATAATCAGAAAAAT
TATTTTTGAAATTTTGCCATTCCAAAAGTTAAATTTAAAGAAAAACAAAG
TTTTATTTTAAAATTTAGCAAAAGCTTTTCGATTAAAAAAACGTCTTCAG
TGCTACAAGCGATGTTAAATTTTAAAATAAAACTTGTTGTTTTTCTTTAA
ATTTAATTATTTTGAGTTTTATAAAAAGTACACAAGTATTTGAAAGCACT
GGAAATCAGTATAAGTCGATCATAATGATATAGTAACATATATTTTAAAG
TGGCATGAGAAATTGTTTCCACGAAGGGCTATTCTTAGATATTTGGTTTC
TTCCTTGAAAACAGTATTACAAAAATGTTATTGAGAACAACTCTACAAGT
ACCTAAATGAGTTTAGAATATCAAAAATGACATTTCTTTCATTTAAGGAA
ACTAATTGAATGACACTTCAACTTTCTTTCTATCAAACTTTAGATATGGC
GAAAAGAAAGAAGAATTTTTTAGAATTGAAGAAGCTTGTTTTGATTGGTG
GACCTGATGATGGAGTCATTACACCTTGGCAATCTAGGTTTGTTAAATGA
ATAGTCTGTTTCCCATATTATCGAGGGTCTTGTCCTTATTTCATCCTGAT
AAAGTTTAAAAGGTAGAATTTGGATTACTCTACACTATTCAAAAATGGTC
AGTCTACTTTGAACTTATAATCACTTTTCATTTCAGCTTATACGGATTTT
ATGATGAAGAATACAAAATCCAAGACATGAAACAACAAAAAGTAAGATTA
CTTTTCTTTTAGATGTTCCCATTGCCTACACAAGGTGATTTTACTGAATT
CGGGTCGACTGTTAAAATTGTTTTAAATTTAAAAGAAACTGCTGCATGCA
TCTCATTCGCCTTATTCCAATTTCAAATCAAATCAGAAGGTAGATGAGGA
AGCTATTCAGCTCTTACATTTCTCAATCACCGCTCGAGTATTCTGATACC
TAAAGACCGGTCTCCACTTGCGCGCGCTTCGATCGCACTTATTTGTGCAA
AGCTTCCACACTATTGGTCAAAAGAAAAATGAAGCAATTCCATTGAAAAA
CAAACAAAAAAGTTGAAATGTGCTCAATTTTTTTTTCGAGCGTGCGCTAC
ATTTTTATGACGTAATCTTTTTTCCAAGCAAAAATGATTGAAGCCGAAAA
GTGCGATCGCAGCGCGCGCAAGTGGAGGCCGGCCCTAACAATTTCCATTT
TTTCGTCAGCTCTACCAAGAAGATTGGTTTGGATTGAGAACACTTTTTGA
AAGAGGAGATGTAGTGATGAGTTCCATCCTCGGTGTCAAACATATCGAAT
GGCATGGCAACCAAAATGTTTTCAAAAGCTTCATCGAGCCATGGCTTATC
TAGAAAATATCATCCTTCACATCTAGATTTCCCCCTTATTTTTGAAACTT
GGATTTGTCGTTATTTGGTGTTCCTGTTTATTTGTTTGGTGTAGTGATGT
AAAAATGGGTCTGGCGCTTGTATTGTGAACATATTCTATAAAATTTCATG
TTATTTACATATCATTGCTTATTATTGTCGTATATATAACCTTATAATAT
ACTCTGTCGTAACGTATAACGTAAAACTTTCTATAACACTCGTAGAGATT
TTTGTACGCTTTTTTATAATCGCTAGAATTAGAATTGTCAAATTTTGGCT
AAGAAAATATTTTGTATGGTTTTGTTATTGGATTTTGATTTACGAAATTC
TTAATTGCAAAAAATATCAAAAAAGGAACAAAAACTTATAAATTATTATG
CAGCTATTGATCTTGCCCCTAATACTGTCCCCATGTATCAAACGGTCCAA
CATTAACTCCAAGTCAATAAAAAAAATATATCTACAAATCAAAACTATAA
ATCATCAATTTATCTACAGTTAAAAAACAATCATCAAAGATTCTTCTCTT
AAGTCAGCCAAGGATATACAGCTAACTTAAGCACAAAATCGGAGCCAGGC
CAAGAGTCATGGTCGATTCCAGGGATGACATATGACGTCACTCGCCCTTG
GTCGTTTTGTGTTTTTAAGCCGAACCAATCGTCTTGGTACATCTATGATC
GAATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012464XLOC_012464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022238-exon-sc0000408-1575043694:215515..216107TCONS_00022238-exon-sc0000408-1575043694:215515..216107Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1575043694:213708..213864TCONS_00022238-exon-sc0000408-1575043694:213708..213864Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1575043694:213485..213540TCONS_00022238-exon-sc0000408-1575043694:213485..213540Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1575043694:213268..213357TCONS_00022238-exon-sc0000408-1575043694:213268..213357Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1575043694:211871..211964TCONS_00022238-exon-sc0000408-1575043694:211871..211964Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1575043694:211667..211721TCONS_00022238-exon-sc0000408-1575043694:211667..211721Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1575043694:210350..211198TCONS_00022238-exon-sc0000408-1575043694:210350..211198Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:215515..216107TCONS_00022238-exon-sc0000408-1510915933:215515..216107Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:213708..213864TCONS_00022238-exon-sc0000408-1510915933:213708..213864Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:213485..213540TCONS_00022238-exon-sc0000408-1510915933:213485..213540Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:213268..213357TCONS_00022238-exon-sc0000408-1510915933:213268..213357Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:211871..211964TCONS_00022238-exon-sc0000408-1510915933:211871..211964Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:211667..211721TCONS_00022238-exon-sc0000408-1510915933:211667..211721Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1510915933:210350..211198TCONS_00022238-exon-sc0000408-1510915933:210350..211198Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:215515..216107TCONS_00022238-exon-sc0000408-1491911889:215515..216107Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:213708..213864TCONS_00022238-exon-sc0000408-1491911889:213708..213864Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:213485..213540TCONS_00022238-exon-sc0000408-1491911889:213485..213540Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:213268..213357TCONS_00022238-exon-sc0000408-1491911889:213268..213357Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:211871..211964TCONS_00022238-exon-sc0000408-1491911889:211871..211964Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:211667..211721TCONS_00022238-exon-sc0000408-1491911889:211667..211721Clytia hemisphaericaexon
TCONS_00022238-exon-sc0000408-1491911889:210350..211198TCONS_00022238-exon-sc0000408-1491911889:210350..211198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:210350..216107 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.24121	0	0	0	0
Blast
[Close]
BLAST of TCONS_00022238 vs. Swiss-Prot (Human)
Match: PPT2 (Lysosomal thioesterase PPT2 OS=Homo sapiens GN=PPT2 PE=1 SV=4)

HSP 1 Score: 232.646 bits (592), Expect = 3.247e-70
Identity = 115/276 (41.67%), Postives = 171/276 (61.96%), Query Frame = 2 
Query:  362 YKPVVIVHGVMSEADHLEDMKQMIEKHHPGTNVTLVHLYPDIESFTPLQRQLKYWKQKIEPLMKEAIDGIHFICHSQGGLICQGLIEETEKHNVHTFIALSSPLNGQFGVPKFVSSYIPWL--KGEREKLSGFMYSTFTQDTFAISNYWKDPREEYYESYLDESRYLPILHNNPQSPRADDMAKRKKNFLELKKLVLIGGPDDGVITPWQSSLYGFYDEEYKIQDMKQQKLYQEDWFGLRTLFERGDVVMSSILGVKHIEWHGNQNVFKSFIEPWL 1183
            YKPV++VHG+   +     + + I + HPGT VT++ L+   ES  PL  Q++ +++ + P+M +A  G+H IC+SQGGL+C+ L+   + HNV +FI+LSSP  GQ+G     + Y+ WL     R  L    YS + Q+ F+I NYW DP  +  + YL+ S +L +++     P A      +KNFL +  LVLIGGPDDGVITPWQSS +GFYD    + +M++Q +Y  D FGL+TL  RG +V   + G+ H  WH N+ ++++ IEPWL
Sbjct:   36 YKPVIVVHGLFDSSYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMAKAPQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGD----TDYLKWLFPTSMRSNLYRICYSPWGQE-FSICNYWHDPHHD--DLYLNASSFLALINGERDHPNA---TVWRKNFLRVGHLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVYLRDSFGLKTLLARGAIVRCPMAGISHTAWHSNRTLYETCIEPWL 301
The following BLAST results are available for this feature:
BLAST of TCONS_00022238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPT23.247e-7041.67Lysosomal thioesterase PPT2 OS=Homo sapiens GN=PPT... [more]
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