TCONS_00022185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022185
Unique NameTCONS_00022185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022185 ID=TCONS_00022185|Name=TCONS_00022185|organism=Clytia hemisphaerica|type=transcript|length=764bp
CTTGCCTGTGCAAAAGGTTAAACCAAAGCTGTCTAAGAAAAATACAAGGA
TCACACAAGTCCATGGATCAATGAAGGCCAAAAATGTGCTCACTGTATTG
AAAGACATCGAGAGTAAGAAACAAGAGCAAGTCAAAAGTAAGGAAGCCAC
tgtcaaaaaaaaggaagataCAAAACATGCATTTCTCAAGTGCAAAGAGA
AATGTATTTGTGAAAAACCAAAATGCGAAGCATTCGGGCCCAAGCAATGT
CCAGTGTGTCAGGACATTTTGAAGTCAGCTTGTAGTAAAGCCAAGTGCAA
AGTTGATGGGATAAAGCCAGTCATGATTGTTCCAGCAGCAGCTACAGCAA
GTTCTTCCAAGAGGAAAGCACCTGCTTCAGAAACCGAGGAAAATGAATCA
GATTTTGTTGATACCGATTTTGATGATACCGAGAATGAGAGCGATTTTGA
AAGTGAAACCAGCAACACCACGGATGATGTAAGTGCTGCATATATCTTAA
GAGCAACTTGGAAAACACTCAGCCCTCCAGTGACTGAGGATTCTCTCTTG
GGGAAGTGGTATGGTGTAGTGTATTGTACAAAGCAAGCTGTATGTTGGTA
AAATCTTGAAACGTTTCTTGGCTGATGAAAACAGGCTTGTTGAGTAATTG
GAAGTTAGGTGCTTGAAGCCCAAAGTAGGCTCTGGTACCATTCTTGAAGA
TACACCAGCTCATTTGCCAGATGTGTCACTGTTTGACTTAGCTGATGTGA
TTTATGGTCCTCTG
Run BLAST on NCBI

protein sequence of TCONS_00022185-protein

>TCONS_00022185-protein ID=TCONS_00022185-protein|Name=TCONS_00022185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
LPVQKVKPKLSKKNTRITQVHGSMKAKNVLTVLKDIESKKQEQVKSKEAT
VKKKEDTKHAFLKCKEKCICEKPKCEAFGPKQCPVCQDILKSACSKAKCK
VDGIKPVMIVPAAATASSSKRKAPASETEENESDFVDTDFDDTENESDFE
SETSNTTDDVSAAYILRATWKTLSPPVTEDSLLGKWYGVVYCTKQAVCW
Run BLAST on NCBI

transcript from alignment at sc0000406:283730..284493

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022185 ID=TCONS_00022185|Name=TCONS_00022185|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0000406:283730..284493 (Clytia hemisphaerica)
CAGAGGACCATAAATCACATCAGCTAAGTCAAACAGTGACACATCTGGCA
AATGAGCTGGTGTATCTTCAAGAATGGTACCAGAGCCTACTTTGGGCTTC
AAGCACCTAACTTCCAATTACTCAACAAGCCTGTTTTCATCAGCCAAGAA
ACGTTTCAAGATTTTACCAACATACAGCTTGCTTTGTACAATACACTACA
CCATACCACTTCCCCAAGAGAGAATCCTCAGTCACTGGAGGGCTGAGTGT
TTTCCAAGTTGCTCTTAAGATATATGCAGCACTTACATCATCCGTGGTGT
TGCTGGTTTCACTTTCAAAATCGCTCTCATTCTCGGTATCATCAAAATCG
GTATCAACAAAATCTGATTCATTTTCCTCGGTTTCTGAAGCAGGTGCTTT
CCTCTTGGAAGAACTTGCTGTAGCTGCTGCTGGAACAATCATGACTGGCT
TTATCCCATCAACTTTGCACTTGGCTTTACTACAAGCTGACTTCAAAATG
TCCTGACACACTGGACATTGCTTGGGCCCGAATGCTTCGCATTTTGGTTT
TTCACAAATACATTTCTCTTTGCACTTGAGAAATGCATGTTTTGtatctt
ccttttttttgacaGTGGCTTCCTTACTTTTGACTTGCTCTTGTTTCTTA
CTCTCGATGTCTTTCAATACAGTGAGCACATTTTTGGCCTTCATTGATCC
ATGGACTTGTGTGATCCTTGTATTTTTCTTAGACAGCTTTGGTTTAACCT
TTTGCACAGGCAAG

Coding sequence (CDS) from alignment at sc0000406:283730..284493

>TCONS_00022185 ID=TCONS_00022185|Name=TCONS_00022185|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000406:283730..284493 (Clytia hemisphaerica)
TTACCAACATACAGCTTGCTTTGTACAATACACTACACCATACCACTTCC
CCAAGAGAGAATCCTCAGTCACTGGAGGGCTGAGTGTTTTCCAAGTTGCT
CTTAAGATATATGCAGCACTTACATCATCCGTGGTGTTGCTGGTTTCACT
TTCAAAATCGCTCTCATTCTCGGTATCATCAAAATCGGTATCAACAAAAT
CTGATTCATTTTCCTCGGTTTCTGAAGCAGGTGCTTTCCTCTTGGAAGAA
CTTGCTGTAGCTGCTGCTGGAACAATCATGACTGGCTTTATCCCATCAAC
TTTGCACTTGGCTTTACTACAAGCTGACTTCAAAATGTCCTGACACACTG
GACATTGCTTGGGCCCGAATGCTTCGCATTTTGGTTTTTCACAAATACAT
TTCTCTTTGCACTTGAGAAATGCATGTTTTGtatcttccttttttttgac
aGTGGCTTCCTTACTTTTGACTTGCTCTTGTTTCTTACTCTCGATGTCTT
TCAATACAGTGAGCACATTTTTGGCCTTCATTGATCCATGGACTTGTGTG
ATCCTTGTATTTTTCTTAGACAGCTTTGGTTTAACCTTTTGCACAGGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012446XLOC_012446Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022185-proteinTCONS_00022185-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022185-exon-sc0000406-1491911889:283730..284493TCONS_00022185-exon-sc0000406-1491911889:283730..284493Clytia hemisphaericaexon
TCONS_00022185-exon-sc0000406-1510915933:283730..284493TCONS_00022185-exon-sc0000406-1510915933:283730..284493Clytia hemisphaericaexon
TCONS_00022185-exon-sc0000406-1575043694:283730..284493TCONS_00022185-exon-sc0000406-1575043694:283730..284493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:283730..284493 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.87577	1.54083	1.5806	2.60386	2.42877	2.20392	1.91685	2.69157	1.55111	1.03411	0.985302	0.518465	0.734256	1.24299	0.816402	1.08619	1.8092	0.635994	0.780359	0.668719	1.4824	1.79003	0.643619	0.505127	1.27052	1.59718	1.75052	1.63474	2.26139	1.7557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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