|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022170 ID=TCONS_00022170|Name=TCONS_00022170|organism=Clytia hemisphaerica|type=transcript|length=2945bpRun BLAST on NCBI protein sequence of TCONS_00022170-protein >TCONS_00022170-protein ID=TCONS_00022170-protein|Name=TCONS_00022170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp MSDNLSALFSSQFSVTKDENTTDGQHPRLCEFKERPINAGSQSKRRKDYLRun BLAST on NCBI transcript from alignment at sc0000406:251361..265001- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022170 ID=TCONS_00022170|Name=TCONS_00022170|organism=Clytia hemisphaerica|type=transcript|length=13641bp|location=Sequence derived from alignment at sc0000406:251361..265001- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000406:251361..265001- >TCONS_00022170 ID=TCONS_00022170|Name=TCONS_00022170|organism=Clytia hemisphaerica|type=CDS|length=11715bp|location=Sequence derived from alignment at sc0000406:251361..265001- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022170 vs. Swiss-Prot (Human)
Match: SPN1 (Snurportin-1 OS=Homo sapiens GN=SNUPN PE=1 SV=1) HSP 1 Score: 275.404 bits (703), Expect = 5.568e-83 Identity = 144/350 (41.14%), Postives = 210/350 (60.00%), Query Frame = 3
Query: 132 DNLSALFSSQFSVTKDENTTDGQHPRLCEFKERPINAGSQSKRRKDYLERQKSKRYDARNYARKLAEGDLDEDDANEIGMEIXXXXXXXXXXXXXXVFRP----YRNQLMLSEWVVDPPTDLVNDWTMVVCPTGKRVLVVAHKGQTSMYAKNGFMLKKFPSLLPGGHRANQIQGFHSTILDCVYDEANGCLFVLDMMCFRGYPLYDCETSFRFFWIQTKLFNESENDIQNISRYNKFKFIPCPSVKCEEASIIDMVTAMHEFQVDGLLFYHNQCHYTPGRTPLVGWLKPFMLPEILNIQLPSSYLDSDQNIDFNRTILKAANEDLQKTSSDRSIYKSKLNSSITSNESKN 1169
+ LS +S FSV++D N+T HPRL ++K + ++ QS+RR+ LE QKSKR D N+AR+LAE D GME E + +E + Y NQLMLSEW++D P+DL +W +VVCP GKR L+VA +G TS Y K+G+ + +F SLLPGG+R N + TILDC+Y+E N +VLD+MC+RG+P YDC+T FRF+W+ +KL E + ++ N FKF+ + C S+ D+++ F+VDGLLFYH Q HY+PG TPLVGWL+P+M+ ++L + +P+ L + + A LQ+ + K + +T S+N
Sbjct: 2 EELSQALASSFSVSQDLNSTAAPHPRLSQYKSK-YSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDW-------TGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDY-TILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKL--PEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPDY---------AGHQLQQIMEHKKSQKEGMKEKLTHKASEN 331 The following BLAST results are available for this feature:
BLAST of TCONS_00022170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.