TCONS_00022170-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022170-protein
Unique Name	TCONS_00022170-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	354

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022170-protein ID=TCONS_00022170-protein|Name=TCONS_00022170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MSDNLSALFSSQFSVTKDENTTDGQHPRLCEFKERPINAGSQSKRRKDYL
ERQKSKRYDARNYARKLAEGDLDEDDANEIGMEISAEKDEKAKEKKSKVF
RPYRNQLMLSEWVVDPPTDLVNDWTMVVCPTGKRVLVVAHKGQTSMYAKN
GFMLKKFPSLLPGGHRANQIQGFHSTILDCVYDEANGCLFVLDMMCFRGY
PLYDCETSFRFFWIQTKLFNESENDIQNISRYNKFKFIPCPSVKCEEASI
IDMVTAMHEFQVDGLLFYHNQCHYTPGRTPLVGWLKPFMLPEILNIQLPS
SYLDSDQNIDFNRTILKAANEDLQKTSSDRSIYKSKLNSSITSNESKNES
NMET

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012432	XLOC_012432	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022170	TCONS_00022170	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024721	Snurportin-1_N

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024721	Snurportin-1, N-terminal	PFAM	PF11538	Snurportin1	coord: 26..66 e-value: 2.9E-10 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	CDD	cd09232	Snurportin-1_C	coord: 103..288 e-value: 6.26607E-80 score: 243.699
None	No IPR available	SUPERFAMILY	56091	DNA ligase/mRNA capping enzyme, catalytic domain	coord: 100..286

Blast

[Close]

BLAST of TCONS_00022170-protein vs. Swiss-Prot (Human)
Match: SPN1 (Snurportin-1 OS=Homo sapiens GN=SNUPN PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 3.953e-92
Identity = 144/346 (41.62%), Postives = 211/346 (60.98%), Query Frame = 0

Query:    3 DNLSALFSSQFSVTKDENTTDGQHPRLCEFKERPINAGSQSKRRKDYLERQKSKRYDARNYARKLAEGDLDEDDANEIGMEISAEKDEKAKEKKSKVFRPYRNQLMLSEWVVDPPTDLVNDWTMVVCPTGKRVLVVAHKGQTSMYAKNGFMLKKFPSLLPGGHRANQIQGFHSTILDCVYDEANGCLFVLDMMCFRGYPLYDCETSFRFFWIQTKLFNESENDIQNISRYNKFKFIPCPSVKCEEASIIDMVTAMHEFQVDGLLFYHNQCHYTPGRTPLVGWLKPFMLPEILNIQLPSSYLDSDQNIDFNRTILKAANEDLQKTSSDRSIYKSKLNSSITSNESKN 348
            + LS   +S FSV++D N+T   HPRL ++K +  ++  QS+RR+  LE QKSKR D  N+AR+LAE D    ++ E   +   E D    +K  K    Y NQLMLSEW++D P+DL  +W +VVCP GKR L+VA +G TS Y K+G+ + +F SLLPGG+R N     + TILDC+Y+E N   +VLD+MC+RG+P YDC+T FRF+W+ +KL    E  +   ++ N FKF+   +  C   S+ D+++    F+VDGLLFYH Q HY+PG TPLVGWL+P+M+ ++L + +P+  L +  +          A   LQ+    +   K  +   +T   S+N
Sbjct:    2 EELSQALASSFSVSQDLNSTAAPHPRLSQYKSK-YSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPK---HYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDY-TILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKL--PEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPDY---------AGHQLQQIMEHKKSQKEGMKEKLTHKASEN 331

The following BLAST results are available for this feature:

BLAST of TCONS_00022170-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022170-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPN1	3.953e-92	41.62	Snurportin-1 OS=Homo sapiens GN=SNUPN PE=1 SV=1	[more]

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TCONS_00022170-protein (polypeptide) - C. hemisphaerica