|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022151 ID=TCONS_00022151|Name=TCONS_00022151|organism=Clytia hemisphaerica|type=transcript|length=885bp
ATAGGTACATTGCAATGTTGCATGATggtattgattttttgaaatgcttG
CCAATCTACAAAAAAAGTAGCAGATGTTATATCTCCAAAGTTTGCAAAAC
ACCAAAGCTGAATGTCAAGGGAGTGCTGGTTCCATTCCAAACTGAGGGAA
GGTGAGGTTCTTGATCAATGGGAAAATAAGATATGACTGCACGAAACCAC
GTGGTCCTTACAACTGGTTTCAAAGAgGTCAATTGAGTGAACAGGCCCCT
CGTGGTCAATATAACCGAATTTGGTACAAACTTCTTGTTCGATTTGAACT
CAAAACTAAAGCACACAAACACTGGTGGAAATTCTCTTACAAATGTGCCA
AAAACGGGTGTAAAGATTTGGTGAAGAAGAGCGGCACTTTGGGTGGCCAT
GCGGTTGCGGGTCCACAGTCATGTAAGAATGATGTTCTGAAATACCGGAA
TTACTTGTTGGAAAATCAGAGAAGGCGTTGTCCGGGATGTGTGGAGCCAT
GATATACTTATGAGACGCTCAGTTTAGTGACTAAAATGGTAAACGGTTGG
TTTTATTAGAAGACCCAGTAAAATTTTGCCGAACCTGAggattttcttaa
atttctattgttccaaacaatAGAACTTTTGTTCTGGAGGCCTAAATCTG
AGGctagtgttcttataaaattgttcttacaaaTAAAATAGCGCGTAGTT
GAAAATCTGTATTTTTTGAATTCTTACAATATCTTTTTGGCGAGGGAGTA
ACAATTTTGTGGGGTATTTTATTATTGTTTAGAGCGGTATATTATagtaa
attaaattttgatatgATAGGTAGTTCTGATTACTGAATGAAATATATCC
GAGGAGAAAACAATGATCCAAAACAATTGTCCATT Run BLAST on NCBI transcript from alignment at sc0000406:41033..46601+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022151 ID=TCONS_00022151|Name=TCONS_00022151|organism=Clytia hemisphaerica|type=transcript|length=5569bp|location=Sequence derived from alignment at sc0000406:41033..46601+ (Clytia hemisphaerica)
ATAGGTACATTGCAATGTTGCATGATggtattgattttttgaaatgcttG
CCAATCTACAAAAAAAGTAGCAGATGTTATATCTCCAAAGTTTGCAAAAC
ACCAAAGCTGAATGTCAAGGGAGTGCTGGTTCCATTCCAAACTGAGGTTT
GAATTTTGTTATTCAAAATTGTTCCCTGTCTTTAAATAAAAGCGACGCTT
GCTTAAACTTGTAggtaatgacaaaaaataacacaaaggatttattatac
actggatatacaagtaacagacttttgccgatttctcgtgtactagctat
gtccgcagtaaagatattattgttcactctccttccctcattaaatgatt
tttcgaagcatttttattgcatttcttatcgaaaatcactcatccaattc
ccaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNccccggtggaaaaataggccaaaaaattgTCCCCGGtaaa
aaaataccctacattttcaaccccactgggaaattgccctatgattctat
ccccattgaaaattgaatagaaaaaattggactccaaaaccatccccact
ggaatttttgagctggaaacaaaagattttctattcccattgggatttcg
atagaaattttcatcccaaaattttcaaacttcaacctcaaaaaaaccac
cttgccatccaccacgtgcctccaaaggattttcataccacagtggagcc
aagacactcaaatcttatgtatgttaatctcagctcttctagggacagtc
ttggaaagatattcccaattgaaaatttcgtgtcactataagcattttgt
ctgaatttcttgtccaatgatgtttttctcacattagatttcacaaatgt
atccagcttggaatgctagccttacttgCTAGCcttacaaactttttttc
tgcaaatgtacaaaaagaaagagcaaGAGAACTTCTTTAAAATAAGACTG
Atgataaagatttttaaaaatcagacatcttcgagccgccatgacagttg
tcctttgcgggcaaagctagaacatcaattgttttctgaaacaatggaaa
tacaatgatcgctctccatcgttttatgagtcatttatccagtgtataat
aaatctttgatgACACGCAAAAAGCTAACAGTTAGGTTTATAATCAGTCT
CATACTTTGAGCCACTTGCACCAATTTTTCATTATACTGGATGTGACACG
ATGTTTTGTAAGCACTATTTTGATCATAAAAAGCTAAGCGACAGGAAATG
AGTTTGATTTTTAATCTAAGCTTTCGATGTATCTCAGACGTCGTCTATTT
ATATAGCGGATATTTGTATGGAGCTGCTTTACCCATAGTCATGGGGTAAA
GTCAAGACTCAGACTTTTACGAGAAAGAAACACCATACACGATTTTCTAT
AAGGACATCCAATGTTcataactttttgacttttaagccaTAAAATGTAC
TTAAtatgttctcattttcaccattttctgtGTTTTTGTCCATGTTCCTA
AGAATTTGGATGTGAATCCTCAAAgtcttaaaatgctcttaactttgtAC
TTAACAAACCGAAAAAATGGAACCCTTCTCCTCTCGCCTTAGATCTGTAA
AAGACCATACAAGATTGTGATTCATCTCCAGTCCTTTAAAACACCTTGGT
ATGCCACGCCCAAACTTCGACCAATCACAATTAATTTCAGAGACGACCAT
AGAAACGGGATGTTTAAAATTCACAGCGATACCACTATAAAAGCGCACGT
ACGATATCTAAGGTTCTTTAATACAGGTATGTTTCGTTTGGAAATGTCTT
TAACATAGCTCACATAAACATGCTTAATTTATTCTTGTAGTGTTCCAACT
ATCGTTGACCAGGAAAGATCTTCTCAAAGCCAAGGGTGCCAAATAAGACG
AAAAATGCGAACAGTGACAAGATTATAATACTAGCCTAAGAAATGAAGAT
TAAATGGGATCACTTCATAACTAATCCACTAATCTAGGCTTCAGAAAGAA
ATGTTCAAAGGCAATCTGCACTATCAAATATAtctcttatctgatattcc
gatggcggattggcggccgctcacgctaaagctctaaagggagcgggcca
atttcccatcggagaggaatgatagtcggcctttggcgtgccgcatcctc
agtcgggttcaacagtcCTTGCCCATAAACCTagaatatttcggttggac
ccgccaatccctgagggctgggttaccagacctcccgcagcaaaattctt
gacgcagtctcgcaaaattccgtaatgtaaaccttccagatgttgaaaat
tttaccgaccttcagagctttagcgtgtcggatgaaaatttcaccatctg
ggtgccagataaataTATCTCGAACCTAGAGCAGCCTTTGTGAGCATTAC
AGCAGAGTCATATAAGAAAAGGATCTTGGTGCGAATTTACCATTCGCCTG
GACGACTTCATACTTGACTTTCTTCGCCATAGGGAAGGTGAGGTTCTTGA
TCAATGGGAAAATAAGATATGACTGCACGAAACCACGTGGTCCTTACAAC
TGGTTTCAAAGAggtgagaaaaacttttttgctcagttttttttatcatg
GTTCTGAATACATCTTTTGTGATTGGGTCATTTCTTATAATTTCAGCCTG
GGAATACAAGTTAATTTGCGCTACACTCTAGACGTAAACGGAATCctgat
attttttgttgataAAGACTTTTTTGAGGTCGAGttccctgcaaaatttt
aaaagccaaatcATAAATTAGGTGCTTTAATTTACTTGAGGAATATTAAA
TATTAGCCCTAATCACGcactcaggatctaaaagctccgCTCAAAAATAT
TCTATTATGGAAATATGGCTGGAAACAGGGtattaacctttcaaagccgc
taacttttttgaaaaaggccaaaaagtttatcatttttttctggagattt
attctttcaaaggcaatttctcgaccaggacaaacgattcaggtaccaac
tttggtatcgttggaaagctcttctcaggcaaattaaggcctatccagat
ttttcaaacttacctcaattttttatcaccgtttccacttatcatagcat
atcacttcatatatcgaaagaagcgtattggagtgtagatcactggaatt
gctgtgccataattaattttttcacccaaaaaaagatattaggcaaaaac
caaaaaatgctgacgtcagcaaaacttgttttttgaataactccaatttg
gcttatggtaaaaacatgaaatttggaccaaagttgcacaccattaaaag
gatcattttgaaaaaaaaattttgaaattttgctgacgtcagcacttaat
tgaaaaatttcgtattttgctgatttctgctgacgtcggcaaaatttgca
aaaaaaNaagaaacaaaatttttgaatttttgctgacgtcagcagttaat
tgcaaaatttcgtattttgctgatttctgctgacgtcagcaaaatttgca
aaaaaaaattatacaaaaatgttcctattattgatatgcaacttttgtcc
aaatttcatgaatataccataagccaaactgtctaatatctttttttggg
cgaaaaaattaattatggcacagcaattctagtgatctacactccaatag
GCTTCTTTCGATGCATGAAGTGATATcctatgacaagtggaaacggtgat
aaaaaattatggtaaaCTTGGACGTGCCATAATTTGCCTGagtttctctc
agctacaaaaaatagcagattttttttctctcaatctcaagtggtcagga
gttatgaccaaaagactgtgtatcggtaaaataaccttttcaaaacgtat
atatacgtatttcGCCTACTAAGGGTattaaggcggggtcaaaatgcttg
caacgttacaaatcatttctaggagctcattttcatttcaaatgaaGGGT
ATCAACAAGTAGAATAAGATTCAGATGTTTTCTGATTAAGAAATTTGGCA
TAATTCGcaaaaaacttagattttgCGTAGATagatttttgctattttga
tgacgtcataaacatttaAGTcctaataacttttgatttaagtatcgaaa
ttaattgaaattcGTCCAAAGATGCACATAATTAATGTTTccagaataaa
aaaatttgcttatgaaatttgatgacgtcatcacttttcgactgaaaaaa
taaaaatgaaatactttaaaatactgacgtcatcataattttaaaaatat
tttgaaatcttgcTTTTCccgcccgaactttaaaattttattttaaaaac
gaCGAAATacctagactatgctatagtctaagacgaattcgAATCTCGGG
TGACACTGATTGTAATTTAACGTTTACTCAACCCTCGATCAATTTCTTCT
GTATTCTTCAGGTCAATTGAGTGAACAGGCCCCTCGTGGTCAATATAACC
GAATTTGGTACAAACTTCTTGTTCGATTTGAACTCAAAACTAAAGCACAC
AAACACTGGTGGAAATTCTCTTACAAATGTGCCAAAAACGGGTGTAAAGA
TTTGGTGAAGAAGAGCGGCACTTTGGGTGGCCATGCGGTTGCGGGTCCAC
AGTCATGTAAGAATGATGTTCTGAAATACCGGAATTACTTGTTGGAAAAT
CAGAGAAGGCGTTGTCCGGGATGTGTGGAGCCATGATATACTTATGAGAC
GCTCAGTTTAGTGACTAAAATGGTAAACGGTTGGTTTTATTAGAAGACCC
AGTAAAATTTTGCCGAACCTGAggattttcttaaatttctattgttccaa
acaatAGAACTTTTGTTCTGGAGGCCTAAATCTGAGGctagtgttcttat
aaaattgttcttacaaaTAAAATAGCGCGTAGTTGAAAATCTGTATTTTT
TGAATTCTTACAATATCTTTTTGGCGAGGGAGTAACAATTTTGTGGGGTA
TTTTATTATTGTTTAGAGCGGTATATTATagtaaattaaattttgatatg
ATAGGTAGTTCTGATTACTGAATGAAATATATCCGAGGAGAAAACAATGA
TCCAAAACAATTGTCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022151-exon-sc0000406-1491911889:41033..41178 | TCONS_00022151-exon-sc0000406-1491911889:41033..41178 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1510915933:41033..41178 | TCONS_00022151-exon-sc0000406-1510915933:41033..41178 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1575043694:41033..41178 | TCONS_00022151-exon-sc0000406-1575043694:41033..41178 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1491911889:44015..44095 | TCONS_00022151-exon-sc0000406-1491911889:44015..44095 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1510915933:44015..44095 | TCONS_00022151-exon-sc0000406-1510915933:44015..44095 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1575043694:44015..44095 | TCONS_00022151-exon-sc0000406-1575043694:44015..44095 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1491911889:45944..46601 | TCONS_00022151-exon-sc0000406-1491911889:45944..46601 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1510915933:45944..46601 | TCONS_00022151-exon-sc0000406-1510915933:45944..46601 | Clytia hemisphaerica | exon |
| TCONS_00022151-exon-sc0000406-1575043694:45944..46601 | TCONS_00022151-exon-sc0000406-1575043694:45944..46601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000406 | supercontig | sc0000406:41033..46601 + |
Blast
The following BLAST results are available for this feature:
|
