TCONS_00022141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022141
Unique NameTCONS_00022141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022141 ID=TCONS_00022141|Name=TCONS_00022141|organism=Clytia hemisphaerica|type=transcript|length=758bp
GCCAAAAATCATGATTGTAGCTTTTGAAGTTCCTGAGATATGGAAAGATG
CAAGTCATGGAAAAATCAAAGTTGAAAACCCTATCGTTGAGCTTGATGGT
GACGAAATGACAAGAATCATTTGGCACAAAATTAAAGGAGAGCTCATTTT
GCCATACTTGGATATTGACTGTAAATATTATGATCTTGGTCTGCCCTACC
GTGATGAAACCAATGATCAAGTTACTGTTGATGCAGCAGAAGCCATCTTG
AAATACAATGTTGGTGTGAAGTGTGCCACCATCACTCCTGATGAAGAACG
GGTCACTGAGTTCAATTTGAAAGAGATGTGGAGGAGCCCCAATGGAACCA
TCCGAAACATCTTAGGTGGAACTGTTTTCCGTGAACCCATCATGTGTACA
AATGTACCTCGACTTGTTCCTGGTTGGGTTGAACCTATTGTTATTGGACG
TCATGCCCACGGTGATCAGTATAAAGCACAAGACGTGGTTGTGAAGGGAG
CTGgcaaatttgaaattcaattcacACCAAAGGATGGCAGTGAAAAAACC
ACTGTGGACGTCTTCGATTTCGATGGAAGTGGTGGTTGTATTATGGGTAT
GTACAATACAGACGAATCCATCCGTGATTTCGCACACAGCTGTTTCCAAT
ACGCCCTTATGAAGAAATGGCCACTCTACATGAGCACTAAAAACACCATC
TTGAAAAGATACGACGGTAGATTTAAAGATATCTTTCAAGACATCTTTGA
AGAGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00022141-protein

>TCONS_00022141-protein ID=TCONS_00022141-protein|Name=TCONS_00022141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
PKIMIVAFEVPEIWKDASHGKIKVENPIVELDGDEMTRIIWHKIKGELIL
PYLDIDCKYYDLGLPYRDETNDQVTVDAAEAILKYNVGVKCATITPDEER
VTEFNLKEMWRSPNGTIRNILGGTVFREPIMCTNVPRLVPGWVEPIVIGR
HAHGDQYKAQDVVVKGAGKFEIQFTPKDGSEKTTVDVFDFDGSGGCIMGM
YNTDESIRDFAHSCFQYALMKKWPLYMSTKNTILKRYDGRFKDIFQDIFE
E
Run BLAST on NCBI

transcript from alignment at sc0000406:5..16698+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022141 ID=TCONS_00022141|Name=TCONS_00022141|organism=Clytia hemisphaerica|type=transcript|length=16694bp|location=Sequence derived from alignment at sc0000406:5..16698+ (Clytia hemisphaerica)
GCCAAAAATCATGATTGTAGCTTTTGAAGTTCCTGAGATATGGAAAGGTT
CGTCGATTTCGTCCCGTTtttaccccagatgactataattctttttattt
tcagatccGTTTTATTTTTCAGTCTACAAGCTTAAACTCATCAGGATTaa
aaactaggctagtcttacctcttttatctttcctttaacaacaaaacaat
gctgacaagttgacacaacacatgtgtacatgtgCATTgtattgacaagt
aatccctgagagacaattaaaagaaacaccaattactccaaatttgagtt
taaggctGATCTATGTGGAAGAGAAgcctttctttttttcaggaaaagca
agaaaaaaagaaaaacaaagaagaagaacTAATAAAATGTACGGCAAATG
CTGCTATGTCGGTTAAGGCAGCACTACCCACTTAATTATTAAGTGGCCGT
TGGACGGACCCCTTGCTTGATGGTGCTTGATGGTGGATTGCTGGCTATCA
AGTATCACCTGGACAAACTTTGTTCTGAAGATCAACAGAAGAGAGAAAGA
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AACAACACAGACACTGTATTTAATTACACATGCTCACCTACTATTTATTC
AGATCATCTTGTTGTAGATGTTACAACACATCTGAATTTTGATAATCAAA
TTTCGGAGAAACTGAAGAACGTAACTTAATAAGCAAATTTGACCTCTACA
ACTTCCAAAGTGATAAAATTGACTGGGAAATTATTAACAAAGAATTAACA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTATTCTTATGAGAAAACGTAAAAGACTctccaaaaagaatttcaaaacc
aataaaacaaatcagAAACTAATTGACATTGAACTGACGCTACAGCAATC
CTACAAAAATGAACGCGATAAAGCAGAGCTGGATGCCTCACTCAAAATCA
AAAGCAATCCTAAATACTTCTACTCCTATGCAAAAAGATTCACAAAAACT
AAACCTAAAGTTGGCCCACTGAAAAATCCANNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNAGTATTTACCACTCCCAAAACAGACTACAGTTTTCTGAA
TTCAAATGAGACAAAAGACTCCTCAACCCTTGAGCACATTACTTTCACAG
AAGATGATTTCATTCAACAAATTGACACTATTCCAGCCAACTCGTCAGCC
GGACCAGATGGCTTGccagaaaagtttttcaaaatgtgcaAGAAATCACT
TTCTAAGCCACTTAAGATGATATGGCAAAACAACTCTGACAAAGGAATCA
CACctgaaattctcaaaacaagCCACATTACACCAATATTCAAGAAAGGA
GATCAAGGTTTACCAGAGAATTATCGACCTGTTGCGCTNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNatgtgctgattttttctgcaaaagaaagctg
aataaattctctacactttggaaaaaatacttatgttgaaagaggtttcc
ttccttgagacatgtaagcttgaatatttttttctaaaatgtatGGTTTG
TTACTGCTGCATGCGTAAGGCCTGACCTCCCtactactgattgcttcccg
atgctccttcgcagctgtttatcacggtttgtgtaaaccacaggttacag
gtcacaggttacaggttacaggtcagtgatgacaggttgactctaatcaa
tgtcattgcagaggaaaatgtttggaaaacacaaagaattatcaaaaaca
taattctcaagcaatttcatccatataaaagcatttcaaacatcaaaatt
taaccatgtgcttttatcgatctttcgcagtttgcgccgtgtataacgca
gaccagaaaatatttgaaagcatactatacgtataacaggtatattacat
attgtaatgtttgtaatgttatatgaaggttacatataataaaacacatc
gctctaaaactaccttctcagaactcaagagcttctgattggtgtaattt
tacatcgagccatattgttatcatcacattcggtatgttaaatatttttg
gtatttttctcttgtaagacatgatattttgtgattctgtcaatattttt
gtcaaaaattgtcattaagtcattaaaataacaattgaatgattaattag
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NNNNNNNNNNNNNNNNNNNNNNNNttctgattggtgccgttttatatcca
ttcacactatcaacatcacattctgtattataaatatttttcgtgttttt
gtcttttcttgcatcagattttatgagtctgttaaaatttttgtcaaaaa
ttgtcattaagtcattaaaataataactaattaactaaaataataactga
ataattaattagttccatccttctaaaacttagggaccttgcaagcttct
gtttatccattcacaccatccacatcacattttgcatgataaatattttt
cgtgcttttgtcttgttaggcatcatattttatgattttgtcattatttt
tgtaagtaagtgtcactaggttgttattctatatCTAAATAatatgtatt
acttttttgtaatttaatgcgttatgtattgatgttatgttatgtatatg
ttatgatcttattatattttttccggtctgcactttgttgacctgtaacc
tgcgacctgtaacctgcggtttacacaaaccgtgtttatcaaatttccac
caatgaatggaaaatttgaaattgcttcattgttttttttctgatttttt
catgAAGACAGAGGGCATCGCTCTCTCAGCTTGGTAAATACCACATACGT
GCGTTTGGCatgtgcgtttggtttgggaacgcgaaacacgaacgcgaact
acccatgtctaaacttttcaatatatctctagaactaacagattttttga
aattctgtaaaaagatctaagttcctgaatagttttactatgttctgtga
aaaaatcataaccatcggtcaaatactcgttcatctatttaagattgaag
acaaaaatttgcgaagaaaaataaaccttgaacaaaaaatgcttttttaa
acacttttttccaccgaaaaacaaataacttttacagacttaccttaccc
aaacattgaagaagccactactaattaaagtaaacgAGATAAGATGAGAT
AAAACCTtcaaatcaaccagaatttacaacctttcgtccaaagcaaaaga
cgtgcttttcttgccgccatcttgttttagaatcggtcttttttcatcca
atcagatcgcgtgatttcactttcgctttctctagttcaataagactgcg
ggatttgagtcatgtgacatctctattaaaaaacccgcgcgaattaaaat
agaaatacagggggtcacaccactggctacaggaactgaaagcaagcaat
taaggccaatatttttggtttttctgaaggaccaaaggtataggaagctt
tactgactACGCAAACGCACATGTTTTGCATTTGATACAAATAAGCTCTC
AAATTCTTTTTACGTCCCCTGACAGCGTGATTTCTAGGCTAGACTTACCT
TATttctattccaacaataaaatgTTTACATAGTTGACACATAATACACA
TTGACAGAAATATTCCCCATGCAATTTTTATATTGAAACCTCTCTCACTT
ATTTGGGGGGTGTAAAtttgtctcattttttaaactcaggggGGCCTAAA
AAAGTGGGGGACCTGAAGGGCTGCACTAAAGTTCTGGGGGCTCATTACAA
Taattaagaaattgtaaaaaaaatttttgtttggttttaatgttctgttt
ttaaatattcttgAAAGTACTTTTTGCGGGGCCCTGAACCTTAagatttc
aactgggacctAAACCTTACCGTAGAGTTGTTTAATATCAACATGTGTCT
TGTtatttcgacatagctgtaggctggtcttcgaaataaaaaatcaaaca
taaacaaatacataccaaagttatcaatcaatcactaaattgtactctcc
ctatatcacgtcacagattgttgagatgtaagaaacgtgaagtgggtttt
tttcgaaaagaaaactttaacgatgtagtcacTAAAAACTTCCGTAGAAt
tgtctaatatcgacatgcgtcttctaaagtcgacaccggatctgtaaaat
aatcaaaacaaaccttgaatgaaattcttggtatcattcttatNNNNNNN
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AATAAAAacgatttcaattgttttttattctgtcaatcatgttctaacag
ccaatcaaatccttcaCAATATGTACTAGCCTGTGCTGTGCTTGAAAACG
CGTATCGtctagtaaattgttacacactgacaccgggcagaatgctaatg
aaaggcccagtacgctaaagctagctgggccaaaaagtgttttctttccc
gatagagttgaagagcaaactttcatctgtattgatttgatacaaaagat
gaggaatcttgtcacagaaaatgttcattagaaggctgtaattctaaatc
cGTTGATAtgcaaattttcttcaaattcaaagggttgtaaacgcttCGAC
AActttttgggagtcagtaatgctttcctatcaattttctttgtttcagc
taatcgattttcgccagacagtctcatTGAAAAACCACCcgttgcaatcc
tttcaatgaaaaaaagcaCACGAAACGTATGCAAACTtgctcgtaacttt
ctcgtgtccatcattaaaattttacaactttattacgtttcaagtcacgt
gataaaaataattcgcgcgcttagcctggtttccccttccttaattataa
aaaatcacgctctaggcgctaagaggccgCATGCCGCTCACGCTGTGATG
GCCAGtagtatggcggtcacattaaattcaaaaggaaacccggttctttt
tattattttcggttcacagtaaaaaggtctactaaaaaattccccgcgtg
caaaatgttgttttgatttggatatCTTCGTTCTGTTGAataaaagcatg
ctaattagtttttagtgactacatcgttaaagttttcttttcgaaaaaaa
cctACTTCGCGTTTCTTACATTTccacaatctgtgacgtgatagggagag
tacaatttagtgattgattgttaactttggtatgtatttgtttatgtttg
attttttatttcgaagaccagcctacagctatgtcaaaataacaagacgc
atgtcgatgttaaacgactctacggtaattagcatgctttcattcaACGG
AACGAGGatatccaaatcaaaacaatattttgcacgcgaggaatttttta
gtagacttTTTTAcagtgaaccgaaaataataaaaagaacccggtttcct
tttgaatttaatgtgaccgccgTACTGGCCATCACGGTGTGTggcctctt
agcgcctagagcgtgtgtttatgataaataaggaaggggaaaccaggcta
agcgcacaaattatttttatcacatgacttgaagcgtaataaagttgtaa
aattttaatgatggacacaagaaagttacgaggaagtttgcatgctcttt
gtgtgttgtgtaaaactgcttatgatttggctgtttttttaattgaaaaa
attgcaatgtttattgaacttctagtttgatggatgaacttgtttgaaaa
gaatgataccaagaatttcattcagggtttgttttgattattttacagat
ccggtgtcgactttagaagacgcatgtcgatattagacgattctacggta
ctgaaaagtggggggacctaaaacttaggggggacctaattttgtTGGGG
tgacctagaaccccattcggagccatgTAATCTGCAataagtctttttta
aatttcaaccaatgagattgcTGTGTATGATGAAGGTAAATGACTATTGG
CTCTACTTTTCGGCACTAATGGCTTTTCAACTCCTTGGATAACTAGTAGT
CATTtaactttatttgtttcaatcgttGATTCTAagggatgatttttttt
cttatcttcAGTTCTCAAAcaaaagcgggaatttgattttttcaaagaat
ccttTCTGATTGGAACAAAGCAGTTCACCCTCATTTGATTGGATACttct
ttttaaacaatcttATGACAATTTTTTGATTAGACAAAAAAACAATCGAT
ATCGCCATGATTGGATAATAAATTATTTGGCACTTTCACAAGCGTTTGAA
TTCTTagtttttattctatttctTCATGTTCACCAACCAAGGTAGTCTTC
ATATATATACCACAGGAAAATCATGAAACCCGCCAACCTAATCTTGAGTT
TGGGAAATCCCCAAGATTTGCGAACAATCATTTTTTCCCACTTTTGcttt
tctctttgatcttttattggtttcttttgttgatttcttgCGTCATCGAT
GACTTGcgcaaaatttcttgaaatggaaacacagattttaccaagctgtc
tctaaaaaatagaaactgttttgttttgtttttgtttgcaaaaatcagat
ttttttattaGGGGAAATTCTCAAATTCCCATAGTCTTTTTTTCCTGGAA
AACCGCTGCTCGCTTACATATCAGTAGTAtgggattttagtttttttgga
aattcctAATATTGCTGATATAGGGTaatcattttaaaatatttatttac
cACTATATCATAATATTTCCTGAtatgtactttaggcgtacaaactttcg
agaggatgaaaaattgtgaaattcaCAACATTTGCTTTCACAACATTTGC
TTTTGCAAATTTAATAACAGAAATATATTTCTCGCAAGCACAAACTTACG
caaatcaagacgtaaaatggAGAACtaaaattctgtcttcaaattacccg
cCCCCTCTTATGCCATCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAACTAGAGTTGCCGTTGCTC
TTACAAAAAATGACATTACAGGGTCTTCTTAAAAATtgactatgttatat
catataGTTATTACTGGCCATGATATTGAAGGGTCAATAAGTCAATAGTt
gataaaaaatcaacttcATTTTGCATGATATCTCATGATTTGAAAGAgct
atgaacttgaaattttgaccagtaaTAGACAATGATAATACCAGTCTAAA
TTTTATTGTTATGATCCAATCATCTGATTTactggtattttacagaccag
aatctATTAGAGGTTTGTGTTGAAAACAGTTGAAAAATGCTATGaacttg
ttttacttttttagtcTCATCACTATTCTCATCAATATTACCTTCTTTCT
TTTTACATCAATCaatccattcagcatgtagcttatGCTTATGCAGACAT
CCCAACATCATTAATTGAAAGGCCAAAGCTTCTATAACATTACATCAAGT
TATTGAAACTTGGCCTCCCTATGAAATTCTAATTTGCATTGCTTAAAGAT
TTGCTACTGCTATTGCTACTGATTACAATTAAATTAATAAGGTTTTAATA
GCACTTCAATTTTAATTCTAGATGCAAGTCATGGAAAAATCAAAGTTGAA
AACCCTATCGTTGAGCTTGATGGTGACGAAATGACAAGAATCATTTGGCA
CAAAATTAAAGGAGAGGTAACAACTTTTAAGGATCTTGGGCCCAGCCTGC
ATGTCCATTGCAGGCTGCATCATTTTAGGCGTGCGATATcacgcgcacac
ctccacacacacctaaaatgtcTGAGGAGTGCGATCAATCACACCCCATA
AAGTAAGTTTCACAACTGAAAGTTGTGCATAGCACGccttatcacacgcc
taaattactaaaattaaggttttaggtttaggagtgtgattgaccacatg
cctgaaattttcaaatgatgcagcctgcattgtgtaaacgttttttattg
tttttattttatctcgATGTTTCTAAAGCAATTCACATTCTAATATCAGA
AGGCAGTGCATTTTGCACTTTGTTGATTCAACTGTTGCACACAGCTTAAA
ATGTAGTTAGTCCAAGCTGTAAATAACAGAAacatctaaataaaaaaatc
tttaacagCCAGGCTTATAAGGACTTAAGCtttcaatgcaaaaaaaatct
attatgtaatattCATACAAATTATACAATAGTAATTGGCTTAGAGATCA
ATACAGGAAAATATTGGCCGCTGTCGAGGTATAGACCAAGCTTGCGAGCT
TGTATTGGACCGTTTACGTCAGTTGTTGtgttttaaaaaagtgtataaTA
AGATAATTCAAAgctctttaaaaatctttttttcaatatcaacTCAACAT
CTAAAGATTGGGGTGACTTTTGAATGTTATGATTATCAATTGgcctcaaa
aaaaaaatttgaagtattttaacaacaaaaacaagcaaagcaCGTGAGGA
ATAAGAGGAAACCATTGTGGAATCCAAGTGACTTGAATTAAATGATCTCT
TATTTCATGGTTAACTTTTCTTGACAACAATCCATTTACACTTGTAGCTC
ATTTTGCCATACTTGGATATTGACTGTAAATATTATGATCTTGGTCTGCC
CTACCGTGATGAAACCAATGATCAAGTTACTGTTGATGCAGCAGAAGCCA
TCTTGAAATACAATGTTGGTGTGAAGTGTGCCACCATCACTCCTGATGAA
GAACGGGTCACTGGTATGTATCGGATTGAAGTTTGAAATCTTTATCTTTT
GCTTCTTTATACTAATGGTTTAATTTTCCTCTTCAAACTAAGTTTTAATC
ctttgaattatttatttttaaagctAAGACAGACATACAGGCAGGCAGGG
AGGCAGGCATACTGATAGACAAGAagcattttttcatcttttgtaAATTT
CTGTGAAGAACTATtgcaaaaattatgtttttgagatttcaattgttttt
ttttaatctcttTTTCTTTCCAACTTTTCAACAGAGTTCAATTTGAAAGA
GATGTGGAGGAGCCCCAATGGAACCATCCGAAACATCTTAGGTGGAACTG
TTTTCCGTGAACCCATCATGTGTACAAATGTACCTCGACTTGTTCCTGGT
TGGGTTGAACCTATTGTTATTGGACGTCATGCCCACGGTGATCAGGTTGG
AAAGATTTCTATTATTACTGTATAATGGGAAAAAtcttaataaaaaattt
tatgCACGATGCTATATTGGAATTTCCGTTGGAAACAGTGTGCACAGTTC
TTCCTTCTCAGCAAGGTGGAAAAAGAGGTTTTTCTGTCTCATatttcaac
aaaatttgaagaatcttCCCAGATTGGTTTTCTCCAAAACTCTTCTAAAA
ACGTTTCTTTGAAGAAATCAATCAACTTTTTCTACTGTTTTCTAGTATAA
AGCACAAGACGTGGTTGTGAAGGGAGCTGgcaaatttgaaattcaattca
cACCAAAGGATGGCAGTGAAAAAACCACTGTGGACGTCTTCGATTTCGAT
GGCAAGAAATTTCATCTAGATTTGTTTTACTaacgaaaaatcaaccttta
gGAACTAATTCGTTTTCAGAAGAAGCATTTTTCTAGACTATTTCACCAGA
ttgtttattttcattaaaatgtgtCCCCtctaaaatcagtttttttaaca
GATCTCCTTTCAAGGTGTAGTCTCTTTTATTTCCCCTTATTTGAAGCATC
GTTCCCTTTCTTTAAATTCGGAAGTACTCCAATTTGCTTAAAACTATTTA
TTTTTCGCTACTGATTTTTCTGAACTGTTATATAAGCAAATACTTTCTAT
ATCCTATCCAGGAAGTGGTGGTTGTATTATGGGTATGTACAATACAGACG
AATCCATCCGTGATTTCGCACACAGCTGTTTCCAATACGCCCTTATGAAG
AAATGGCCACTCTACATGAGCACTAAAAACACCATCTTGAAAAGATACGA
CGGTAGATTTAAAGATATCTTTCAAGACATCTTTGAAGAGTAAG

Coding sequence (CDS) from alignment at sc0000406:5..16698+

>TCONS_00022141 ID=TCONS_00022141|Name=TCONS_00022141|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000406:5..16698+ (Clytia hemisphaerica)
CCAAAAATCATGATTGTAGCTTTTGAAGTTCCTGAGATATGGAAAGATGC
AAGTCATGGAAAAATCAAAGTTGAAAACCCTATCGTTGAGCTTGATGGTG
ACGAAATGACAAGAATCATTTGGCACAAAATTAAAGGAGAGCTCATTTTG
CCATACTTGGATATTGACTGTAAATATTATGATCTTGGTCTGCCCTACCG
TGATGAAACCAATGATCAAGTTACTGTTGATGCAGCAGAAGCCATCTTGA
AATACAATGTTGGTGTGAAGTGTGCCACCATCACTCCTGATGAAGAACGG
GTCACTGAGTTCAATTTGAAAGAGATGTGGAGGAGCCCCAATGGAACCAT
CCGAAACATCTTAGGTGGAACTGTTTTCCGTGAACCCATCATGTGTACAA
ATGTACCTCGACTTGTTCCTGGTTGGGTTGAACCTATTGTTATTGGACGT
CATGCCCACGGTGATCAGTATAAAGCACAAGACGTGGTTGTGAAGGGAGC
TGgcaaatttgaaattcaattcacACCAAAGGATGGCAGTGAAAAAACCA
CTGTGGACGTCTTCGATTTCGATGGAAGTGGTGGTTGTATTATGGGTATG
TACAATACAGACGAATCCATCCGTGATTTCGCACACAGCTGTTTCCAATA
CGCCCTTATGAAGAAATGGCCACTCTACATGAGCACTAAAAACACCATCT
TGAAAAGATACGACGGTAGATTTAAAGATATCTTTCAAGACATCTTTGAA
GAGTAACCAAAAATCATGATTGTAGCTTTTGAAGTTCCTGAGATATGGAA
AGATGCAAGTCATGGAAAAATCAAAGTTGAAAACCCTATCGTTGAGCTTG
ATGGTGACGAAATGACAAGAATCATTTGGCACAAAATTAAAGGAGAGCTC
ATTTTGCCATACTTGGATATTGACTGTAAATATTATGATCTTGGTCTGCC
CTACCGTGATGAAACCAATGATCAAGTTACTGTTGATGCAGCAGAAGCCA
TCTTGAAATACAATGTTGGTGTGAAGTGTGCCACCATCACTCCTGATGAA
GAACGGGTCACTGAGTTCAATTTGAAAGAGATGTGGAGGAGCCCCAATGG
AACCATCCGAAACATCTTAGGTGGAACTGTTTTCCGTGAACCCATCATGT
GTACAAATGTACCTCGACTTGTTCCTGGTTGGGTTGAACCTATTGTTATT
GGACGTCATGCCCACGGTGATCAGTATAAAGCACAAGACGTGGTTGTGAA
GGGAGCTGgcaaatttgaaattcaattcacACCAAAGGATGGCAGTGAAA
AAACCACTGTGGACGTCTTCGATTTCGATGGAAGTGGTGGTTGTATTATG
GGTATGTACAATACAGACGAATCCATCCGTGATTTCGCACACAGCTGTTT
CCAATACGCCCTTATGAAGAAATGGCCACTCTACATGAGCACTAAAAACA
CCATCTTGAAAAGATACGACGGTAGATTTAAAGATATCTTTCAAGACATC
TTTGAAGAGTAACCAAAAATCATGATTGTAGCTTTTGAAGTTCCTGAGAT
ATGGAAAGATGCAAGTCATGGAAAAATCAAAGTTGAAAACCCTATCGTTG
AGCTTGATGGTGACGAAATGACAAGAATCATTTGGCACAAAATTAAAGGA
GAGCTCATTTTGCCATACTTGGATATTGACTGTAAATATTATGATCTTGG
TCTGCCCTACCGTGATGAAACCAATGATCAAGTTACTGTTGATGCAGCAG
AAGCCATCTTGAAATACAATGTTGGTGTGAAGTGTGCCACCATCACTCCT
GATGAAGAACGGGTCACTGAGTTCAATTTGAAAGAGATGTGGAGGAGCCC
CAATGGAACCATCCGAAACATCTTAGGTGGAACTGTTTTCCGTGAACCCA
TCATGTGTACAAATGTACCTCGACTTGTTCCTGGTTGGGTTGAACCTATT
GTTATTGGACGTCATGCCCACGGTGATCAGTATAAAGCACAAGACGTGGT
TGTGAAGGGAGCTGgcaaatttgaaattcaattcacACCAAAGGATGGCA
GTGAAAAAACCACTGTGGACGTCTTCGATTTCGATGGAAGTGGTGGTTGT
ATTATGGGTATGTACAATACAGACGAATCCATCCGTGATTTCGCACACAG
CTGTTTCCAATACGCCCTTATGAAGAAATGGCCACTCTACATGAGCACTA
AAAACACCATCTTGAAAAGATACGACGGTAGATTTAAAGATATCTTTCAA
GACATCTTTGAAGAGTAACCAAAAATCATGATTGTAGCTTTTGAAGTTCC
TGAGATATGGAAAGATGCAAGTCATGGAAAAATCAAAGTTGAAAACCCTA
TCGTTGAGCTTGATGGTGACGAAATGACAAGAATCATTTGGCACAAAATT
AAAGGAGAGCTCATTTTGCCATACTTGGATATTGACTGTAAATATTATGA
TCTTGGTCTGCCCTACCGTGATGAAACCAATGATCAAGTTACTGTTGATG
CAGCAGAAGCCATCTTGAAATACAATGTTGGTGTGAAGTGTGCCACCATC
ACTCCTGATGAAGAACGGGTCACTGAGTTCAATTTGAAAGAGATGTGGAG
GAGCCCCAATGGAACCATCCGAAACATCTTAGGTGGAACTGTTTTCCGTG
AACCCATCATGTGTACAAATGTACCTCGACTTGTTCCTGGTTGGGTTGAA
CCTATTGTTATTGGACGTCATGCCCACGGTGATCAGTATAAAGCACAAGA
CGTGGTTGTGAAGGGAGCTGgcaaatttgaaattcaattcacACCAAAGG
ATGGCAGTGAAAAAACCACTGTGGACGTCTTCGATTTCGATGGAAGTGGT
GGTTGTATTATGGGTATGTACAATACAGACGAATCCATCCGTGATTTCGC
ACACAGCTGTTTCCAATACGCCCTTATGAAGAAATGGCCACTCTACATGA
GCACTAAAAACACCATCTTGAAAAGATACGACGGTAGATTTAAAGATATC
TTTCAAGACATCTTTGAAGAGTAACCAAAAATCATGATTGTAGCTTTTGA
AGTTCCTGAGATATGGAAAGATGCAAGTCATGGAAAAATCAAAGTTGAAA
ACCCTATCGTTGAGCTTGATGGTGACGAAATGACAAGAATCATTTGGCAC
AAAATTAAAGGAGAGCTCATTTTGCCATACTTGGATATTGACTGTAAATA
TTATGATCTTGGTCTGCCCTACCGTGATGAAACCAATGATCAAGTTACTG
TTGATGCAGCAGAAGCCATCTTGAAATACAATGTTGGTGTGAAGTGTGCC
ACCATCACTCCTGATGAAGAACGGGTCACTGAGTTCAATTTGAAAGAGAT
GTGGAGGAGCCCCAATGGAACCATCCGAAACATCTTAGGTGGAACTGTTT
TCCGTGAACCCATCATGTGTACAAATGTACCTCGACTTGTTCCTGGTTGG
GTTGAACCTATTGTTATTGGACGTCATGCCCACGGTGATCAGTATAAAGC
ACAAGACGTGGTTGTGAAGGGAGCTGgcaaatttgaaattcaattcacAC
CAAAGGATGGCAGTGAAAAAACCACTGTGGACGTCTTCGATTTCGATGGA
AGTGGTGGTTGTATTATGGGTATGTACAATACAGACGAATCCATCCGTGA
TTTCGCACACAGCTGTTTCCAATACGCCCTTATGAAGAAATGGCCACTCT
ACATGAGCACTAAAAACACCATCTTGAAAAGATACGACGGTAGATTTAAA
GATATCTTTCAAGACATCTTTGAAGAGTAACCAAAAATCATGATTGTAGC
TTTTGAAGTTCCTGAGATATGGAAAGATGCAAGTCATGGAAAAATCAAAG
TTGAAAACCCTATCGTTGAGCTTGATGGTGACGAAATGACAAGAATCATT
TGGCACAAAATTAAAGGAGAGCTCATTTTGCCATACTTGGATATTGACTG
TAAATATTATGATCTTGGTCTGCCCTACCGTGATGAAACCAATGATCAAG
TTACTGTTGATGCAGCAGAAGCCATCTTGAAATACAATGTTGGTGTGAAG
TGTGCCACCATCACTCCTGATGAAGAACGGGTCACTGAGTTCAATTTGAA
AGAGATGTGGAGGAGCCCCAATGGAACCATCCGAAACATCTTAGGTGGAA
CTGTTTTCCGTGAACCCATCATGTGTACAAATGTACCTCGACTTGTTCCT
GGTTGGGTTGAACCTATTGTTATTGGACGTCATGCCCACGGTGATCAGTA
TAAAGCACAAGACGTGGTTGTGAAGGGAGCTGgcaaatttgaaattcaat
tcacACCAAAGGATGGCAGTGAAAAAACCACTGTGGACGTCTTCGATTTC
GATGGAAGTGGTGGTTGTATTATGGGTATGTACAATACAGACGAATCCAT
CCGTGATTTCGCACACAGCTGTTTCCAATACGCCCTTATGAAGAAATGGC
CACTCTACATGAGCACTAAAAACACCATCTTGAAAAGATACGACGGTAGA
TTTAAAGATATCTTTCAAGACATCTTTGAAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012420XLOC_012420Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022141-proteinTCONS_00022141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022141-exon-sc0000406-1491911889:5..51TCONS_00022141-exon-sc0000406-1491911889:5..51Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1510915933:5..51TCONS_00022141-exon-sc0000406-1510915933:5..51Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1575043694:5..51TCONS_00022141-exon-sc0000406-1575043694:5..51Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1491911889:14276..14370TCONS_00022141-exon-sc0000406-1491911889:14276..14370Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1510915933:14276..14370TCONS_00022141-exon-sc0000406-1510915933:14276..14370Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1575043694:14276..14370TCONS_00022141-exon-sc0000406-1575043694:14276..14370Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1491911889:15252..15417TCONS_00022141-exon-sc0000406-1491911889:15252..15417Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1510915933:15252..15417TCONS_00022141-exon-sc0000406-1510915933:15252..15417Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1575043694:15252..15417TCONS_00022141-exon-sc0000406-1575043694:15252..15417Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1491911889:15689..15849TCONS_00022141-exon-sc0000406-1491911889:15689..15849Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1510915933:15689..15849TCONS_00022141-exon-sc0000406-1510915933:15689..15849Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1575043694:15689..15849TCONS_00022141-exon-sc0000406-1575043694:15689..15849Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1491911889:16100..16205TCONS_00022141-exon-sc0000406-1491911889:16100..16205Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1510915933:16100..16205TCONS_00022141-exon-sc0000406-1510915933:16100..16205Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1575043694:16100..16205TCONS_00022141-exon-sc0000406-1575043694:16100..16205Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1491911889:16516..16698TCONS_00022141-exon-sc0000406-1491911889:16516..16698Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1510915933:16516..16698TCONS_00022141-exon-sc0000406-1510915933:16516..16698Clytia hemisphaericaexon
TCONS_00022141-exon-sc0000406-1575043694:16516..16698TCONS_00022141-exon-sc0000406-1575043694:16516..16698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:5..16698 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
361.434	374.006	414.136	428.145	90.6329	79.0567	89.0643	97.2259	107.224	119.458	126.752	123.089	188.073	171.705	279.798	337.833	230.043	233.35	47.1936	72.1002	112.215	127.45	169.455	171.843	100.535	109.292	127.599	91.4465	122.436	99.4583
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024084IsoPropMal-DH-like_dom
IPR004790Isocitrate_DH_NADP
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006102isocitrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004450isocitrate dehydrogenase (NADP+) activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006102 isocitrate metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0004450 isocitrate dehydrogenase (NADP+) activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Blast
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BLAST of TCONS_00022141 vs. Swiss-Prot (Human)
Match: IDHP (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.867e-119
Identity = 166/231 (71.86%), Postives = 193/231 (83.55%), Query Frame = 2 
Query:   62 KIKVENPIVELDGDEMTRIIWHKIKGELILPYLDIDCKYYDLGLPYRDETNDQVTVDAAEAILKYNVGVKCATITPDEERVTEFNLKEMWRSPNGTIRNILGGTVFREPIMCTNVPRLVPGWVEPIVIGRHAHGDQYKAQDVVVKGAGKFEIQFTPKDGSEKTTVDVFDFDGSGGCIMGMYNTDESIRDFAHSCFQYALMKKWPLYMSTKNTILKRYDGRFKDIFQDIFEE 754
            +IKV  P+VE+DGDEMTRIIW  IK +LILP++DI  KY+DLGLP RD+T+DQVT+D+A A  KY+V VKCATITPDE RV EF LK+MW+SPNGTIRNILGGTVFREPI+C N+PRLVPGW +PI IGRHAHGDQYKA D V   AG F++ FTPKDGS     +V++F  +GG  MGMYNTDESI  FAHSCFQYA+ KKWPLYMSTKNTILK YDGRFKDIFQ+IF++
Sbjct:   43 RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFP-AGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDK 272
The following BLAST results are available for this feature:
BLAST of TCONS_00022141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IDHP1.867e-11971.86Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
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