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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022120 ID=TCONS_00022120|Name=TCONS_00022120|organism=Clytia hemisphaerica|type=transcript|length=2187bpRun BLAST on NCBI protein sequence of TCONS_00022120-protein >TCONS_00022120-protein ID=TCONS_00022120-protein|Name=TCONS_00022120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp MASEEQLEELEAIQAIFMDEYKDHSKKNCSPEFTIQLVPLQSTIAKDVHARun BLAST on NCBI transcript from alignment at sc0000405:115499..126820- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022120 ID=TCONS_00022120|Name=TCONS_00022120|organism=Clytia hemisphaerica|type=transcript|length=11322bp|location=Sequence derived from alignment at sc0000405:115499..126820- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000405:115499..126820- >TCONS_00022120 ID=TCONS_00022120|Name=TCONS_00022120|organism=Clytia hemisphaerica|type=CDS|length=24318bp|location=Sequence derived from alignment at sc0000405:115499..126820- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022120 vs. Swiss-Prot (Human)
Match: E2AK4 (eIF-2-alpha kinase GCN2 OS=Homo sapiens GN=EIF2AK4 PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 7.583e-23 Identity = 78/263 (29.66%), Postives = 133/263 (50.57%), Query Frame = 1
Query: 895 SSGGEKQIDDQAKQIQSITQEFNYLKSKVNYGGLINYHALDFDHSATNISAKLLSDSITGLCLASYLQEDG-LPLSLLHHICRQIVDGLYFLHSKSVVHHNLNLETTFINEQNEVTLSGYAMVRRICDLC---IXXXXXXXFNDKTEEEEQNGGRGKLLFRQDMKAGKKGDIYNMGLIALSLYQGHSLIQLPIDFPEDLPDALLSFLKSCLDVEEDKRSTAAQLLQHAFICDKIIDNPKTKHT---QQNNGASKNDHSESNXP 1662
+S +++ID KQIQ EFN L K+++ ++ Y A++ +I +L + I+G+ LA++L G +P+ L Q++ GL +LHS SVVH L+ ++ + V ++ Y++ +R+ D+C + + F+D K GKKGD++ +GL+ LSL QG + P+ P DLP FLK C+ +++ +R + QLL+H+FI NP+ K Q + D+ E+ P
Sbjct: 326 TSQEKEKIDKCKKQIQGTETEFNSL-VKLSHPNVVRYLAMNLKEQDDSIVVDILVEHISGVSLAAHLSHSGPIPVHQLRRYTAQLLSGLDYLHSNSVVHKVLSASNVLVDAEGTVKITDYSISKRLADICKEDVFEQTRVRFSDNA---------------LPYKTGKKGDVWRLGLLLLSLSQGQECGEYPVTIPSDLPADFQDFLKKCVCLDDKERWSPQQLLKHSFI------NPQPKMPLVEQSPEDSEGQDYVETVIP 566 The following BLAST results are available for this feature:
BLAST of TCONS_00022120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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