TCONS_00022090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022090
Unique NameTCONS_00022090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022090 ID=TCONS_00022090|Name=TCONS_00022090|organism=Clytia hemisphaerica|type=transcript|length=2830bp
ATGACTTTTACACttatgaaaatcaaatatcaagATTTAGACAAAAGATG
AAGGATGATTTCTTAACAAAAACTGCTAACTCTCAAAAGACAACTGTTAA
GAAAAAGAAACCAGAAACTGCGAAAAACGCTAATTTGTGTAATGAAGTTA
TAGTGTGTGGAGATAGCTTGTTGAACAATATCGATGGGAAAGGATTATCG
TCTAAACAAGCAAGGGTTCGTGTTAAAAACTTTCCTGGTGCAGATACGGA
AGATATGATAGATTTTGTGAAACCTCTTTTGAAGAAGTCACCAAAATTTT
TGATTGTTCATGCTGGTACAAACGACATTACGTCTGGTTGCCAAACTAAA
GAAAATCTGGAAACTATAAGAAATCTTGTCACGGAAACTAGTCCTTCGAC
CGAGCTCATATTCTCTGAGGTGCTTTTAAGGGAAGATAGAATAAATTCTC
AAAGCTTGGTGAAAGAAAAGAACAAAATCATTGGAAATTTCTGTGAAAGG
TACAATTTACATTTTATTGAACACAACAACATTTCACGAAAGATGTTGGC
ATCAAAAAAGCTTCACTTAAACGGGGGAGGTATCTCGACCTTTGCTCAAA
ATCTTAAAAAGTTTGTGTGTGGTAACTGTTGATATGTTGATGGCAATTTG
ATTGACCGACCTGATAATGATGATGCTGAGCTTCCTAATTTGGGAAGAGA
AATTGATGTTAATGTTATTTACAATATCAAGTCTAAAAATCCTTCGAATA
TATTATTGGGCTATTTGAATATTAACTCTATCAGAAATAAGTTCTCTGAC
CTGAAAATTCTGCTTGAAAACTCTTTTGATATATTTACTATCGCTGAAAC
AAAGATCGACGAATCCTTTCCTAGCTCCCAATTCAAATGGCAGGGCTATC
ACTTTCCCCCTTTTCGTCTAGATTGTAAATCCAATAGTGGAGGCTTACTG
ACTTATGTAAAATCTGATATCCCTGCACGTAAACTAATTAAATTCAAGCT
TGATCCATCTTTGCATATCTTACCCATTGAGGTTAGATTCAGGAAAACAA
AGAtacttatttttaatatttatcgGCCAGATAGGATTAGTATAGACATA
TTCTTTGAAACGCTGTCTGAAGCTATTCATTTTTATGAAGTAGATTATGA
TAATACTTTTATTATAGGTGACTTCAACCTTGAACCCAATGATcacaaag
ttttgaattttcttgaATTAAACGACATGACCAACGTCATTAAATCAAAA
ACTTGTTTTAAATCAATATCAGGGTCATGTATTGATCTCATAATAAAAAA
CACACCAAAAATGATCAGTTTGAACAGCTCAAAATCTGTCAGTGGGAATA
TACCGACTCGTGTGTTTAAAATTGCTGCGGCTTCGTGTACTCCATTCTTG
ACTTCTTGTTTCAACGAATCCTTAATATCTGGAACTTTTCCGGATAGGTT
GAAACTAGCTGACATTATTCCTACTTTCAAAAAAGGTGCTCTGACAGACA
AGACCAATTACAGACCCATAAGTCTTCTCCCTGtgatatcaaaaattttt
gagcGTCTCCTAACAAACCAACTTACTACTTTTTTTGAACCATCCTTCTC
CAAATTATTATGTGGATTTCGAAAAGGCCACAGCACTCCGAAAGTGAAAG
TGTTTTCTTAAAGAACAATGCTGAATGATAAAATTCTTCGAAAGATCAGA
ATCTTTGTTTACTACTTTGCAAACTACCCAAACACTACATTAAACAGTAA
AACGAGTAAAACAACAATATAAGATGGTAGCATTTTGGAGCTAGTAAAAT
GAGCTCCAAAATATACCAGATTATCCAATACACTGTAAAACAATAGAGTT
ATGGAACAACAAAAACAGACAGAGGCTCCACCTGCATACCAAGAAGGTCA
ATGGGATAGCGAGCAGCAGACAAGAGGCAGTGGGGACGCCTCCCTGAAGG
GATACCCTTTACCGCCTACAGCACAACATCAACAGCCAACTTCTTATGGA
AACCAACCACCCATGTACTATCAACAGACACCGTGTCAGCAACAACCTGG
CTATGTTTATGGTGCACCACCACCCCCACCTGGCACAGTATACATGGCGC
CCCAACAAGTGGTTATGGAGCCGCCCCCACCCGATTGGGCGCTCTTGTCA
TGGTTCACTTGTCTCTGTTGTTGCTGGCCTATCGGTTTGATTGCTGTTAT
CAAGTCACTGGATGTTGGATCAGCCATTCGTTCAGGTGATATGGTGCGTG
CAAAAGAGTCCTCTGAAAGTGCAAAGAAGTTTGCTTATCTTGCTTTCGCA
TGTGGAATATTTTTCTCCCTGTTGTGGCTTATATTATGGATCATTTTTGC
CGATCAAATTCATTCACATAGAAgacactttcatttttaaaattggACTA
CGAAAGTTTTCTGGTTCAAAGTTATCCTAAGTTCTGGTCCAAATAATTGG
CAgttcacacttttttataaattgttCTTTGAAAGAGAAAAGATATAATG
GAAAGAATGTCTcgtttggaaagaaaattttgagcgGATTGATTTCATGT
GggcttcttttaaaaattttccaaaaaaaaagtagAACAAAACTTCTAGa
ctgaatttttcaaaacaacaaagtttGAGCCCTAGGGCCATAACTGGAAA
AGCTAATTGAAATTCAGAAACAACGCATAAAACATTTAAACCAAGAAAGA
AATTATATCACCAATTCGACGCGAAGGACAAGGACAAAAGTGAAATCCAA
CAAAATCAATACAGCGGCAAaactaaaactcaaaaataatgacaaacaGA
CAATCTTACAATTGACAATtaacaaataaa
Run BLAST on NCBI

protein sequence of TCONS_00022090-protein

>TCONS_00022090-protein ID=TCONS_00022090-protein|Name=TCONS_00022090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
DFYTYENQISRFRQKMKDDFLTKTANSQKTTVKKKKPETAKNANLCNEVI
VCGDSLLNNIDGKGLSSKQARVRVKNFPGADTEDMIDFVKPLLKKSPKFL
IVHAGTNDITSGCQTKENLETIRNLVTETSPSTELIFSEVLLREDRINSQ
SLVKEKNKIIGNFCERYNLHFIEHNNISRKMLASKKLHLNGGGISTFAQN
LKKFVCGNC
Run BLAST on NCBI

transcript from alignment at sc0000405:13329..18473+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022090 ID=TCONS_00022090|Name=TCONS_00022090|organism=Clytia hemisphaerica|type=transcript|length=5145bp|location=Sequence derived from alignment at sc0000405:13329..18473+ (Clytia hemisphaerica)
ATGACTTTTACACttatgaaaatcaaatatcaagATTTAGACAAAAGATG
AAGGATGATTTCTTAACAAAAACTGCTAACTCTCAAAAGACAACTGTTAA
GAAAAAGAAACCAGAAACTGCGAAAAACGCTAATTTGTGTAATGAAGTTA
TAGTGTGTGGAGATAGCTTGTTGAACAATATCGATGGGAAAGGATTATCG
TCTAAACAAGCAAGGGTTCGTGTTAAAAACTTTCCTGGTGCAGATACGGA
AGATATGATAGATTTTGTGAAACCTCTTTTGAAGAAGTCACCAAAATTTT
TGATTGTTCATGCTGGTACAAACGACATTACGTCTGGTTGCCAAACTAAA
GAAAATCTGGAAACTATAAGAAATCTTGTCACGGAAACTAGTCCTTCGAC
CGAGCTCATATTCTCTGAGGTGCTTTTAAGGGAAGATAGAATAAATTCTC
AAAGCTTGGTGAAAGAAAAGAACAAAATCATTGGAAATTTCTGTGAAAGG
TACAATTTACATTTTATTGAACACAACAACATTTCACGAAAGATGTTGGC
ATCAAAAAAGCTTCACTTAAACGGGGGAGGTATCTCGACCTTTGCTCAAA
ATCTTAAAAAGTTTGTGTGTGGTAACTGTTGATATGTTGATGGCAATTTG
ATTGACCGACCTGATAATGATGATGCTGAGCTTCCTAATTTGGGAAGAGA
AATTGATGTTAATGTTATTTACAATATCAAGTCTAAAAATCCTTCGAATA
TATTATTGGGCTATTTGAATATTAACTCTATCAGAAATAAGTTCTCTGAC
CTGAAAATTCTGCTTGAAAACTCTTTTGATATATTTACTATCGCTGAAAC
AAAGATCGACGAATCCTTTCCTAGCTCCCAATTCAAATGGCAGGGCTATC
ACTTTCCCCCTTTTCGTCTAGATTGTAAATCCAATAGTGGAGGCTTACTG
ACTTATGTAAAATCTGATATCCCTGCACGTAAACTAATTAAATTCAAGCT
TGATCCATCTTTGCATATCTTACCCATTGAGGTTAGATTCAGGAAAACAA
AGAtacttatttttaatatttatcgGCCAGATAGGATTAGTATAGACATA
TTCTTTGAAACGCTGTCTGAAGCTATTCATTTTTATGAAGTAGATTATGA
TAATACTTTTATTATAGGTGACTTCAACCTTGAACCCAATGATcacaaag
ttttgaattttcttgaATTAAACGACATGACCAACGTCATTAAATCAAAA
ACTTGTTTTAAATCAATATCAGGGTCATGTATTGATCTCATAATAAAAAA
CACACCAAAAATGATCAGTTTGAACAGCTCAAAATCTGTCAGTGGGAATA
TACCGACTCGTGTGTTTAAAATTGCTGCGGCTTCGTGTACTCCATTCTTG
ACTTCTTGTTTCAACGAATCCTTAATATCTGGAACTTTTCCGGATAGGTT
GAAACTAGCTGACATTATTCCTACTTTCAAAAAAGGTGCTCTNCTTTTCC
GGATAGGTTGAAACTAGCTGACATTATTCCTACTTTCAAAAAAGGTGCTC
TGACAGACAAGACCAATTACAGACCCATAAGTCTTCTCCCTGtgatatca
aaaatttttgagcGTCTCCTAACAAACCAACTTACTACTTTTTTTGAACC
ATCCTTCTCCAAATTATTATGTGGATTTCGAAAAGGCCACAGCACTCCGA
AAGTGAAAGTGTTTTCTTAAAGAACAATGCTGAATGATAAAATTCTTCGA
AAGATCAGAATCTTTGTTTACTACTTTGCAAACTACCCAAACACTACATT
AAACAGTAAAACGAGTAAAACAACAATATAAGATGGTAGCATTTTGGAGC
TAGTAAAATGAGCTCCAAAATATACCAGATTATCCAATACACTGTAAAAC
AATAGAGTTATGGAACAACAAAAACAGACAGGTATATAATACTTTTCAGt
gatttacacttttttttataagaacaaactgtataagaacataaggctac
gatgtccaaaatgttaagaacaagttaagaacctTTTATAAGGCTTTGCA
GTCTCTAAAACaacctatttcttaggaaaatcaaaaaatgacaaaaataa
gaacatgttaagaacatttgggcttaaaactaaaaaagtcaaGGAACATC
Tgcaggcttcaaaaattttggatgttcttatacaataaattgaagttgag
attGGAATTGTTcgatactcaaagtttcacgcAACCTTTCCTTATCatct
tcagtcaaaaattctataaggatgttcttataaaagNAACCTTTCCTTAC
CatcttcagtcaaaaattctatacggatgttcttataaaaggaaATGTGT
ACCATTTCAATCATGTAATTCCAGTCTAAATGAATCATTGGTATTTGGAA
CTGATTACGATCACACAATGGGTTTCTGTTGGATGGAAGCGAAAACCTCT
AAAATTTTGGACCTACAGAAAGTCGTTATTAGAAAGTTGTAGTCATGGTT
ACCCATGAATGATTGTGCCCGTGAAATGGTCTATTTCTAGGTGGTATTCT
AACATTATTCGAGTAAGGTTGTAAAGGAAGCTTCTAAGAAtgctaaaaat
atgaaatctgGAATCAGAGAAAAAAGCCATTCACTTAGAATTACACCTTG
ACATGGGGCTGACGATCGATTCGAATTAAAGAcgaatttaaaataaatta
ttcTTTTCATAAACTTTCCAAACAGAGGCTCCACCTGCATACCAAGAAGG
TCAATGGGATAGCGAGCAGCAGACAAGAGGCAGTGGGGACGCCTCCCTGA
AGGGATACCCTTTACCGCCTACAGCACAACATCAACAGCCAACTTCTTAT
GGAAACCAACCACCCATGTACTATCAACAGACACCGTGTCAGCAACAACC
TGGCTATGTTTATGTAAGTGAAATATTGATACTCAAGATGAACTttaaaa
ttttagccaaataaaAAGGCAACGAATTCATTCAATTGTGTGACTGaatt
ttttcctcaattttttcataattattatcATGCATATTGCCCTTATGTGT
TACATAAGGTCAATATGGCAGAGCAAATGCCCGCCAAttggcatggttgt
gagttcgagtctcgccagatccgttggttttccaacggttctagTGGCTG
GTCAaaagacaacatgagagcgactgtattcacttcattataattattat
caaaacaaaaaaggtttTACTTTTCCTAAATAATTACAAAAGCAGTAATA
GCCCAGAAGTAATATTTCATTAATTCTCTTCCACAACAACTAGGGTGCAC
CACCACCCCCACCTGGCACAGTATACATGGCGCCCCAACAAGTGGTTATG
GAGCCGCCCCCACCCGATTGGGCGCTCTTGTCATGGTTCACTTGTCTCTG
TTGTTGCTGGCCTATCGGTTTGATTGCTGTTATCAAGTCACTGGATGTGA
GTATGATACACGTTTATACATAAGAAAATAAGGCTTTGATGACCATGAAG
AACAAGTCAGGAATATCTTAACTCTTAGACCACGAATATGcgtccaaaac
aagccaaaatactCAGTCTCAAGAGTTGAGACCATAGCTCCTCACCAATT
GATTTAAAGAGGCATAAACCGAATACTTTTGGAAAGAGTATAAATCACTT
TCCgatggtaccaaaaccattttctaaatcaaaagctacaagctttcatg
gcactttaaagttttgagtttcaaaggaaaaatttagaaaaatttcaact
ttttcaaaaaaaacagcGCGCACAAAGGGTTAAGGCTTTTCGAACTCAAA
AACACCGAAATTTTTGAGAAGTTGCGCTAAAAAACTCACAAATGGTGAAa
acaagaacattttgaggcataaaaccaaaaaattaagaacatacaAAAGC
TTCATAATCTTTGGACGTTcgtataaaaaaaacttgtaaccGGGAAAGAT
TACTTGACTTTATTTTGGCAATCTCATTTgcaaaactaaattttaaaaat
tcggattttgggctctcttaaccatcaaaattaatttaataTTGTGAATT
CACCTCTTATAAATGTACTTTTAGGTATATTTGTGTACCACTGATCTAAC
TGTAGCATTAGTAACTTTTTAGTGAATCACTGCtaaaatttgagaccaaa
aggactattttataaaaaataattcaagaaaaaccattttgtaggttgtA
AGGGAGTAAATAgctaaaagtgcattttttcacttcttcgtaaaaaaact
gaaaactggttTCTGCAAAACATCACTGCTAGGGAAGAAAACCAAAAAAA
GCTTACTTTACACAAAAAGGTTTCAGCCTCAAATTCCACCTAAATTTTCA
GATAGAGGGTACCTATATTtttatgtaggttttaaggggtattcactggt
attgttttttcaaaactcaCAAAGCGTCATTAAACGGGGCTATAACGTCT
GTACTATAATTAAACACAATAATCACgaaacaaaaattgtttcagTGTTT
CAATTTCACTTTCTTCTTTGTGTTATAGGTTGGATCAGCCATTCGTTCAG
GTGATATGGTGCGTGCAAAAGAGTCCTCTGAAAGTGCAAAGAAGTTTGCT
TATCTTGCTTTCGCATGTGGAATATTTTTCTCCCTGTTGTGGCTTATATT
ATGGATCATTTTTGCCGATCAAATTCATTCACATAGAAgacactttcatt
tttaaaattggACTACGAAAGTTTTCTGGTTCAAAGTTATCCTAAGTTCT
GGTCCAAATAATTGGCAgttcacacttttttataaattgttCTTTGAAAG
AGAAAAGATATAATGGAAAGAATGTCTcgtttggaaagaaaattttgagc
gGATTGATTTCATGTGggcttcttttaaaaattttccaaaaaaaaagtag
AACAAAACTTCTAGactgaatttttcaaaacaacaaagtttGAGCCCTAG
GGCCATAACTGGAAAAGCTAATTGAAATTCAGAAACAACGCATAAAACAT
TTAAACCAAGAAAGAAATTATATCACCAATTCGACGCGAAGGACAAGGAC
AAAAGTGAAATCCAACAAAATCAATACAGCGGCAAaactaaaactcaaaa
ataatgacaaacaGACAATCTTACAATTGACAATtaacaaataaa

Coding sequence (CDS) from alignment at sc0000405:13329..18473+

>TCONS_00022090 ID=TCONS_00022090|Name=TCONS_00022090|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000405:13329..18473+ (Clytia hemisphaerica)
GACTTTTACACttatgaaaatcaaatatcaagATTTAGACAAAAGATGAA
GGATGATTTCTTAACAAAAACTGCTAACTCTCAAAAGACAACTGTTAAGA
AAAAGAAACCAGAAACTGCGAAAAACGCTAATTTGTGTAATGAAGTTATA
GTGTGTGGAGATAGCTTGTTGAACAATATCGATGGGAAAGGATTATCGTC
TAAACAAGCAAGGGTTCGTGTTAAAAACTTTCCTGGTGCAGATACGGAAG
ATATGATAGATTTTGTGAAACCTCTTTTGAAGAAGTCACCAAAATTTTTG
ATTGTTCATGCTGGTACAAACGACATTACGTCTGGTTGCCAAACTAAAGA
AAATCTGGAAACTATAAGAAATCTTGTCACGGAAACTAGTCCTTCGACCG
AGCTCATATTCTCTGAGGTGCTTTTAAGGGAAGATAGAATAAATTCTCAA
AGCTTGGTGAAAGAAAAGAACAAAATCATTGGAAATTTCTGTGAAAGGTA
CAATTTACATTTTATTGAACACAACAACATTTCACGAAAGATGTTGGCAT
CAAAAAAGCTTCACTTAAACGGGGGAGGTATCTCGACCTTTGCTCAAAAT
CTTAAAAAGTTTGTGTGTGGTAACTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012389XLOC_012389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022090-exon-sc0000405-1491911889:13329..14775TCONS_00022090-exon-sc0000405-1491911889:13329..14775Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1510915933:13329..14775TCONS_00022090-exon-sc0000405-1510915933:13329..14775Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1575043694:13329..14775TCONS_00022090-exon-sc0000405-1575043694:13329..14775Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1491911889:14835..15259TCONS_00022090-exon-sc0000405-1491911889:14835..15259Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1510915933:14835..15259TCONS_00022090-exon-sc0000405-1510915933:14835..15259Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1575043694:14835..15259TCONS_00022090-exon-sc0000405-1575043694:14835..15259Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1491911889:16054..16241TCONS_00022090-exon-sc0000405-1491911889:16054..16241Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1510915933:16054..16241TCONS_00022090-exon-sc0000405-1510915933:16054..16241Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1575043694:16054..16241TCONS_00022090-exon-sc0000405-1575043694:16054..16241Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1491911889:16622..16774TCONS_00022090-exon-sc0000405-1491911889:16622..16774Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1510915933:16622..16774TCONS_00022090-exon-sc0000405-1510915933:16622..16774Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1575043694:16622..16774TCONS_00022090-exon-sc0000405-1575043694:16622..16774Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1491911889:17857..18473TCONS_00022090-exon-sc0000405-1491911889:17857..18473Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1510915933:17857..18473TCONS_00022090-exon-sc0000405-1510915933:17857..18473Clytia hemisphaericaexon
TCONS_00022090-exon-sc0000405-1575043694:17857..18473TCONS_00022090-exon-sc0000405-1575043694:17857..18473Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022090-proteinTCONS_00022090-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000405supercontigsc0000405:13329..18473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.980832	0.856693	1.07817	0.961008	3.99762	2.37727	2.6452	3.25112	1.84503	1.97421	2.67468	1.7891	2.66684	2.66148	1.68327	2.98593	1.48662	2.12289	2.1373	2.87233	1.5788	1.4363	1.28817	1.93907	1.4533	1.86773	5.6104	2.99105	0.781241	0.505129
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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