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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022090 ID=TCONS_00022090|Name=TCONS_00022090|organism=Clytia hemisphaerica|type=transcript|length=2830bp
ATGACTTTTACACttatgaaaatcaaatatcaagATTTAGACAAAAGATG
AAGGATGATTTCTTAACAAAAACTGCTAACTCTCAAAAGACAACTGTTAA
GAAAAAGAAACCAGAAACTGCGAAAAACGCTAATTTGTGTAATGAAGTTA
TAGTGTGTGGAGATAGCTTGTTGAACAATATCGATGGGAAAGGATTATCG
TCTAAACAAGCAAGGGTTCGTGTTAAAAACTTTCCTGGTGCAGATACGGA
AGATATGATAGATTTTGTGAAACCTCTTTTGAAGAAGTCACCAAAATTTT
TGATTGTTCATGCTGGTACAAACGACATTACGTCTGGTTGCCAAACTAAA
GAAAATCTGGAAACTATAAGAAATCTTGTCACGGAAACTAGTCCTTCGAC
CGAGCTCATATTCTCTGAGGTGCTTTTAAGGGAAGATAGAATAAATTCTC
AAAGCTTGGTGAAAGAAAAGAACAAAATCATTGGAAATTTCTGTGAAAGG
TACAATTTACATTTTATTGAACACAACAACATTTCACGAAAGATGTTGGC
ATCAAAAAAGCTTCACTTAAACGGGGGAGGTATCTCGACCTTTGCTCAAA
ATCTTAAAAAGTTTGTGTGTGGTAACTGTTGATATGTTGATGGCAATTTG
ATTGACCGACCTGATAATGATGATGCTGAGCTTCCTAATTTGGGAAGAGA
AATTGATGTTAATGTTATTTACAATATCAAGTCTAAAAATCCTTCGAATA
TATTATTGGGCTATTTGAATATTAACTCTATCAGAAATAAGTTCTCTGAC
CTGAAAATTCTGCTTGAAAACTCTTTTGATATATTTACTATCGCTGAAAC
AAAGATCGACGAATCCTTTCCTAGCTCCCAATTCAAATGGCAGGGCTATC
ACTTTCCCCCTTTTCGTCTAGATTGTAAATCCAATAGTGGAGGCTTACTG
ACTTATGTAAAATCTGATATCCCTGCACGTAAACTAATTAAATTCAAGCT
TGATCCATCTTTGCATATCTTACCCATTGAGGTTAGATTCAGGAAAACAA
AGAtacttatttttaatatttatcgGCCAGATAGGATTAGTATAGACATA
TTCTTTGAAACGCTGTCTGAAGCTATTCATTTTTATGAAGTAGATTATGA
TAATACTTTTATTATAGGTGACTTCAACCTTGAACCCAATGATcacaaag
ttttgaattttcttgaATTAAACGACATGACCAACGTCATTAAATCAAAA
ACTTGTTTTAAATCAATATCAGGGTCATGTATTGATCTCATAATAAAAAA
CACACCAAAAATGATCAGTTTGAACAGCTCAAAATCTGTCAGTGGGAATA
TACCGACTCGTGTGTTTAAAATTGCTGCGGCTTCGTGTACTCCATTCTTG
ACTTCTTGTTTCAACGAATCCTTAATATCTGGAACTTTTCCGGATAGGTT
GAAACTAGCTGACATTATTCCTACTTTCAAAAAAGGTGCTCTGACAGACA
AGACCAATTACAGACCCATAAGTCTTCTCCCTGtgatatcaaaaattttt
gagcGTCTCCTAACAAACCAACTTACTACTTTTTTTGAACCATCCTTCTC
CAAATTATTATGTGGATTTCGAAAAGGCCACAGCACTCCGAAAGTGAAAG
TGTTTTCTTAAAGAACAATGCTGAATGATAAAATTCTTCGAAAGATCAGA
ATCTTTGTTTACTACTTTGCAAACTACCCAAACACTACATTAAACAGTAA
AACGAGTAAAACAACAATATAAGATGGTAGCATTTTGGAGCTAGTAAAAT
GAGCTCCAAAATATACCAGATTATCCAATACACTGTAAAACAATAGAGTT
ATGGAACAACAAAAACAGACAGAGGCTCCACCTGCATACCAAGAAGGTCA
ATGGGATAGCGAGCAGCAGACAAGAGGCAGTGGGGACGCCTCCCTGAAGG
GATACCCTTTACCGCCTACAGCACAACATCAACAGCCAACTTCTTATGGA
AACCAACCACCCATGTACTATCAACAGACACCGTGTCAGCAACAACCTGG
CTATGTTTATGGTGCACCACCACCCCCACCTGGCACAGTATACATGGCGC
CCCAACAAGTGGTTATGGAGCCGCCCCCACCCGATTGGGCGCTCTTGTCA
TGGTTCACTTGTCTCTGTTGTTGCTGGCCTATCGGTTTGATTGCTGTTAT
CAAGTCACTGGATGTTGGATCAGCCATTCGTTCAGGTGATATGGTGCGTG
CAAAAGAGTCCTCTGAAAGTGCAAAGAAGTTTGCTTATCTTGCTTTCGCA
TGTGGAATATTTTTCTCCCTGTTGTGGCTTATATTATGGATCATTTTTGC
CGATCAAATTCATTCACATAGAAgacactttcatttttaaaattggACTA
CGAAAGTTTTCTGGTTCAAAGTTATCCTAAGTTCTGGTCCAAATAATTGG
CAgttcacacttttttataaattgttCTTTGAAAGAGAAAAGATATAATG
GAAAGAATGTCTcgtttggaaagaaaattttgagcgGATTGATTTCATGT
GggcttcttttaaaaattttccaaaaaaaaagtagAACAAAACTTCTAGa
ctgaatttttcaaaacaacaaagtttGAGCCCTAGGGCCATAACTGGAAA
AGCTAATTGAAATTCAGAAACAACGCATAAAACATTTAAACCAAGAAAGA
AATTATATCACCAATTCGACGCGAAGGACAAGGACAAAAGTGAAATCCAA
CAAAATCAATACAGCGGCAAaactaaaactcaaaaataatgacaaacaGA
CAATCTTACAATTGACAATtaacaaataaa Run BLAST on NCBI protein sequence of TCONS_00022090-protein >TCONS_00022090-protein ID=TCONS_00022090-protein|Name=TCONS_00022090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
DFYTYENQISRFRQKMKDDFLTKTANSQKTTVKKKKPETAKNANLCNEVI
VCGDSLLNNIDGKGLSSKQARVRVKNFPGADTEDMIDFVKPLLKKSPKFL
IVHAGTNDITSGCQTKENLETIRNLVTETSPSTELIFSEVLLREDRINSQ
SLVKEKNKIIGNFCERYNLHFIEHNNISRKMLASKKLHLNGGGISTFAQN
LKKFVCGNC Run BLAST on NCBI transcript from alignment at sc0000405:13329..18473+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022090 ID=TCONS_00022090|Name=TCONS_00022090|organism=Clytia hemisphaerica|type=transcript|length=5145bp|location=Sequence derived from alignment at sc0000405:13329..18473+ (Clytia hemisphaerica)
ATGACTTTTACACttatgaaaatcaaatatcaagATTTAGACAAAAGATG
AAGGATGATTTCTTAACAAAAACTGCTAACTCTCAAAAGACAACTGTTAA
GAAAAAGAAACCAGAAACTGCGAAAAACGCTAATTTGTGTAATGAAGTTA
TAGTGTGTGGAGATAGCTTGTTGAACAATATCGATGGGAAAGGATTATCG
TCTAAACAAGCAAGGGTTCGTGTTAAAAACTTTCCTGGTGCAGATACGGA
AGATATGATAGATTTTGTGAAACCTCTTTTGAAGAAGTCACCAAAATTTT
TGATTGTTCATGCTGGTACAAACGACATTACGTCTGGTTGCCAAACTAAA
GAAAATCTGGAAACTATAAGAAATCTTGTCACGGAAACTAGTCCTTCGAC
CGAGCTCATATTCTCTGAGGTGCTTTTAAGGGAAGATAGAATAAATTCTC
AAAGCTTGGTGAAAGAAAAGAACAAAATCATTGGAAATTTCTGTGAAAGG
TACAATTTACATTTTATTGAACACAACAACATTTCACGAAAGATGTTGGC
ATCAAAAAAGCTTCACTTAAACGGGGGAGGTATCTCGACCTTTGCTCAAA
ATCTTAAAAAGTTTGTGTGTGGTAACTGTTGATATGTTGATGGCAATTTG
ATTGACCGACCTGATAATGATGATGCTGAGCTTCCTAATTTGGGAAGAGA
AATTGATGTTAATGTTATTTACAATATCAAGTCTAAAAATCCTTCGAATA
TATTATTGGGCTATTTGAATATTAACTCTATCAGAAATAAGTTCTCTGAC
CTGAAAATTCTGCTTGAAAACTCTTTTGATATATTTACTATCGCTGAAAC
AAAGATCGACGAATCCTTTCCTAGCTCCCAATTCAAATGGCAGGGCTATC
ACTTTCCCCCTTTTCGTCTAGATTGTAAATCCAATAGTGGAGGCTTACTG
ACTTATGTAAAATCTGATATCCCTGCACGTAAACTAATTAAATTCAAGCT
TGATCCATCTTTGCATATCTTACCCATTGAGGTTAGATTCAGGAAAACAA
AGAtacttatttttaatatttatcgGCCAGATAGGATTAGTATAGACATA
TTCTTTGAAACGCTGTCTGAAGCTATTCATTTTTATGAAGTAGATTATGA
TAATACTTTTATTATAGGTGACTTCAACCTTGAACCCAATGATcacaaag
ttttgaattttcttgaATTAAACGACATGACCAACGTCATTAAATCAAAA
ACTTGTTTTAAATCAATATCAGGGTCATGTATTGATCTCATAATAAAAAA
CACACCAAAAATGATCAGTTTGAACAGCTCAAAATCTGTCAGTGGGAATA
TACCGACTCGTGTGTTTAAAATTGCTGCGGCTTCGTGTACTCCATTCTTG
ACTTCTTGTTTCAACGAATCCTTAATATCTGGAACTTTTCCGGATAGGTT
GAAACTAGCTGACATTATTCCTACTTTCAAAAAAGGTGCTCTNCTTTTCC
GGATAGGTTGAAACTAGCTGACATTATTCCTACTTTCAAAAAAGGTGCTC
TGACAGACAAGACCAATTACAGACCCATAAGTCTTCTCCCTGtgatatca
aaaatttttgagcGTCTCCTAACAAACCAACTTACTACTTTTTTTGAACC
ATCCTTCTCCAAATTATTATGTGGATTTCGAAAAGGCCACAGCACTCCGA
AAGTGAAAGTGTTTTCTTAAAGAACAATGCTGAATGATAAAATTCTTCGA
AAGATCAGAATCTTTGTTTACTACTTTGCAAACTACCCAAACACTACATT
AAACAGTAAAACGAGTAAAACAACAATATAAGATGGTAGCATTTTGGAGC
TAGTAAAATGAGCTCCAAAATATACCAGATTATCCAATACACTGTAAAAC
AATAGAGTTATGGAACAACAAAAACAGACAGGTATATAATACTTTTCAGt
gatttacacttttttttataagaacaaactgtataagaacataaggctac
gatgtccaaaatgttaagaacaagttaagaacctTTTATAAGGCTTTGCA
GTCTCTAAAACaacctatttcttaggaaaatcaaaaaatgacaaaaataa
gaacatgttaagaacatttgggcttaaaactaaaaaagtcaaGGAACATC
Tgcaggcttcaaaaattttggatgttcttatacaataaattgaagttgag
attGGAATTGTTcgatactcaaagtttcacgcAACCTTTCCTTATCatct
tcagtcaaaaattctataaggatgttcttataaaagNAACCTTTCCTTAC
CatcttcagtcaaaaattctatacggatgttcttataaaaggaaATGTGT
ACCATTTCAATCATGTAATTCCAGTCTAAATGAATCATTGGTATTTGGAA
CTGATTACGATCACACAATGGGTTTCTGTTGGATGGAAGCGAAAACCTCT
AAAATTTTGGACCTACAGAAAGTCGTTATTAGAAAGTTGTAGTCATGGTT
ACCCATGAATGATTGTGCCCGTGAAATGGTCTATTTCTAGGTGGTATTCT
AACATTATTCGAGTAAGGTTGTAAAGGAAGCTTCTAAGAAtgctaaaaat
atgaaatctgGAATCAGAGAAAAAAGCCATTCACTTAGAATTACACCTTG
ACATGGGGCTGACGATCGATTCGAATTAAAGAcgaatttaaaataaatta
ttcTTTTCATAAACTTTCCAAACAGAGGCTCCACCTGCATACCAAGAAGG
TCAATGGGATAGCGAGCAGCAGACAAGAGGCAGTGGGGACGCCTCCCTGA
AGGGATACCCTTTACCGCCTACAGCACAACATCAACAGCCAACTTCTTAT
GGAAACCAACCACCCATGTACTATCAACAGACACCGTGTCAGCAACAACC
TGGCTATGTTTATGTAAGTGAAATATTGATACTCAAGATGAACTttaaaa
ttttagccaaataaaAAGGCAACGAATTCATTCAATTGTGTGACTGaatt
ttttcctcaattttttcataattattatcATGCATATTGCCCTTATGTGT
TACATAAGGTCAATATGGCAGAGCAAATGCCCGCCAAttggcatggttgt
gagttcgagtctcgccagatccgttggttttccaacggttctagTGGCTG
GTCAaaagacaacatgagagcgactgtattcacttcattataattattat
caaaacaaaaaaggtttTACTTTTCCTAAATAATTACAAAAGCAGTAATA
GCCCAGAAGTAATATTTCATTAATTCTCTTCCACAACAACTAGGGTGCAC
CACCACCCCCACCTGGCACAGTATACATGGCGCCCCAACAAGTGGTTATG
GAGCCGCCCCCACCCGATTGGGCGCTCTTGTCATGGTTCACTTGTCTCTG
TTGTTGCTGGCCTATCGGTTTGATTGCTGTTATCAAGTCACTGGATGTGA
GTATGATACACGTTTATACATAAGAAAATAAGGCTTTGATGACCATGAAG
AACAAGTCAGGAATATCTTAACTCTTAGACCACGAATATGcgtccaaaac
aagccaaaatactCAGTCTCAAGAGTTGAGACCATAGCTCCTCACCAATT
GATTTAAAGAGGCATAAACCGAATACTTTTGGAAAGAGTATAAATCACTT
TCCgatggtaccaaaaccattttctaaatcaaaagctacaagctttcatg
gcactttaaagttttgagtttcaaaggaaaaatttagaaaaatttcaact
ttttcaaaaaaaacagcGCGCACAAAGGGTTAAGGCTTTTCGAACTCAAA
AACACCGAAATTTTTGAGAAGTTGCGCTAAAAAACTCACAAATGGTGAAa
acaagaacattttgaggcataaaaccaaaaaattaagaacatacaAAAGC
TTCATAATCTTTGGACGTTcgtataaaaaaaacttgtaaccGGGAAAGAT
TACTTGACTTTATTTTGGCAATCTCATTTgcaaaactaaattttaaaaat
tcggattttgggctctcttaaccatcaaaattaatttaataTTGTGAATT
CACCTCTTATAAATGTACTTTTAGGTATATTTGTGTACCACTGATCTAAC
TGTAGCATTAGTAACTTTTTAGTGAATCACTGCtaaaatttgagaccaaa
aggactattttataaaaaataattcaagaaaaaccattttgtaggttgtA
AGGGAGTAAATAgctaaaagtgcattttttcacttcttcgtaaaaaaact
gaaaactggttTCTGCAAAACATCACTGCTAGGGAAGAAAACCAAAAAAA
GCTTACTTTACACAAAAAGGTTTCAGCCTCAAATTCCACCTAAATTTTCA
GATAGAGGGTACCTATATTtttatgtaggttttaaggggtattcactggt
attgttttttcaaaactcaCAAAGCGTCATTAAACGGGGCTATAACGTCT
GTACTATAATTAAACACAATAATCACgaaacaaaaattgtttcagTGTTT
CAATTTCACTTTCTTCTTTGTGTTATAGGTTGGATCAGCCATTCGTTCAG
GTGATATGGTGCGTGCAAAAGAGTCCTCTGAAAGTGCAAAGAAGTTTGCT
TATCTTGCTTTCGCATGTGGAATATTTTTCTCCCTGTTGTGGCTTATATT
ATGGATCATTTTTGCCGATCAAATTCATTCACATAGAAgacactttcatt
tttaaaattggACTACGAAAGTTTTCTGGTTCAAAGTTATCCTAAGTTCT
GGTCCAAATAATTGGCAgttcacacttttttataaattgttCTTTGAAAG
AGAAAAGATATAATGGAAAGAATGTCTcgtttggaaagaaaattttgagc
gGATTGATTTCATGTGggcttcttttaaaaattttccaaaaaaaaagtag
AACAAAACTTCTAGactgaatttttcaaaacaacaaagtttGAGCCCTAG
GGCCATAACTGGAAAAGCTAATTGAAATTCAGAAACAACGCATAAAACAT
TTAAACCAAGAAAGAAATTATATCACCAATTCGACGCGAAGGACAAGGAC
AAAAGTGAAATCCAACAAAATCAATACAGCGGCAAaactaaaactcaaaa
ataatgacaaacaGACAATCTTACAATTGACAATtaacaaataaa Coding sequence (CDS) from alignment at sc0000405:13329..18473+ >TCONS_00022090 ID=TCONS_00022090|Name=TCONS_00022090|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000405:13329..18473+ (Clytia hemisphaerica)
GACTTTTACACttatgaaaatcaaatatcaagATTTAGACAAAAGATGAA
GGATGATTTCTTAACAAAAACTGCTAACTCTCAAAAGACAACTGTTAAGA
AAAAGAAACCAGAAACTGCGAAAAACGCTAATTTGTGTAATGAAGTTATA
GTGTGTGGAGATAGCTTGTTGAACAATATCGATGGGAAAGGATTATCGTC
TAAACAAGCAAGGGTTCGTGTTAAAAACTTTCCTGGTGCAGATACGGAAG
ATATGATAGATTTTGTGAAACCTCTTTTGAAGAAGTCACCAAAATTTTTG
ATTGTTCATGCTGGTACAAACGACATTACGTCTGGTTGCCAAACTAAAGA
AAATCTGGAAACTATAAGAAATCTTGTCACGGAAACTAGTCCTTCGACCG
AGCTCATATTCTCTGAGGTGCTTTTAAGGGAAGATAGAATAAATTCTCAA
AGCTTGGTGAAAGAAAAGAACAAAATCATTGGAAATTTCTGTGAAAGGTA
CAATTTACATTTTATTGAACACAACAACATTTCACGAAAGATGTTGGCAT
CAAAAAAGCTTCACTTAAACGGGGGAGGTATCTCGACCTTTGCTCAAAAT
CTTAAAAAGTTTGTGTGTGGTAACTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022090-exon-sc0000405-1491911889:13329..14775 | TCONS_00022090-exon-sc0000405-1491911889:13329..14775 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1510915933:13329..14775 | TCONS_00022090-exon-sc0000405-1510915933:13329..14775 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1575043694:13329..14775 | TCONS_00022090-exon-sc0000405-1575043694:13329..14775 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1491911889:14835..15259 | TCONS_00022090-exon-sc0000405-1491911889:14835..15259 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1510915933:14835..15259 | TCONS_00022090-exon-sc0000405-1510915933:14835..15259 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1575043694:14835..15259 | TCONS_00022090-exon-sc0000405-1575043694:14835..15259 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1491911889:16054..16241 | TCONS_00022090-exon-sc0000405-1491911889:16054..16241 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1510915933:16054..16241 | TCONS_00022090-exon-sc0000405-1510915933:16054..16241 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1575043694:16054..16241 | TCONS_00022090-exon-sc0000405-1575043694:16054..16241 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1491911889:16622..16774 | TCONS_00022090-exon-sc0000405-1491911889:16622..16774 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1510915933:16622..16774 | TCONS_00022090-exon-sc0000405-1510915933:16622..16774 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1575043694:16622..16774 | TCONS_00022090-exon-sc0000405-1575043694:16622..16774 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1491911889:17857..18473 | TCONS_00022090-exon-sc0000405-1491911889:17857..18473 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1510915933:17857..18473 | TCONS_00022090-exon-sc0000405-1510915933:17857..18473 | Clytia hemisphaerica | exon |
| TCONS_00022090-exon-sc0000405-1575043694:17857..18473 | TCONS_00022090-exon-sc0000405-1575043694:17857..18473 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000405 | supercontig | sc0000405:13329..18473 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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