TCONS_00022080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022080
Unique NameTCONS_00022080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022080 ID=TCONS_00022080|Name=TCONS_00022080|organism=Clytia hemisphaerica|type=transcript|length=1725bp
tttaaagaaaaagtttcatggccaaatttaggccaaatttTGGATTTGTG
GAAGTTGCTTCATTAGATTTTATCTTTACATAAATGaaaggattgttttt
tgtttgtgcCCAAAACTTACCATGGCTCCTTAGCTCTAAAACATcgaaca
ttttcatcttcattcagcATGTTTCCGACTATCTctctcaggtaggtcca
ttcaacatgttgtttgttctttttcaaTCTTCCTTGGTCCGTCTCGCGTA
cttctttcttttcatcatcggttataaatatttcatcctTCACTTGAAAG
TAAATTTATTATTCCACaaaaaagtagataaaagaagaaaagaaagaaca
caaaacaaaacaacagcAATAAACagtcgaaaaaaaagaagaagaataat
aataataaagaagAAATACttagttctttatttttttatttttgtcataA
AATAGAAAATGCTTGGTATAATAAACTAGTCTTTATCTTGAACTTAACTT
CCTATGCTTCTATTATTTGGTATTTATTAATACGTTTGACCTCTGGCTGG
CATTGCTAAACGGACGGTATTTTCAAGTTTCATGTAGTGCGTGGAAACCG
TCCCCCGTGATTACGCTACCATTATGAAAATCAGTAAGAAACCAGGTATC
TGGTTGTTGACCAAGTTCAATGTGGTTTTCCGTAAGAAGGTCAGCGGCCG
GAAGAATACAAACGAATTCGCGACCAGTCGACAACACTCACAACAACCTT
ATGATAATGTTCAAgttGACACTTTGAGCGAAGAGCAGATTTTAGACTTC
AAAGAAGCCTTCGCGCTTTTTGACAAAGACGGAGATGGTACAATCACAAC
AAAAGAACTTGGCACCGTCATGAGAAGTCTGGGACAGAATCCAACTGAAA
ACGAACTTGAAGATATGATTAATGAAGTCGATTTTGACGGATCAGGGACG
ATAGAATTTCCCGAGTTTATAACAATGATGGCGCGAAAGTTGCGAGACAC
AGACGATGATATACAAGAAGCATTCCGCGTCTTCGATCAAAGGGGTACAG
GACATATCAGTGCAAAAGAATTACACAGTGTGATGACGAACCTCGGTGGA
GAATATTTGACACCTCAAGAAATCGATGAAATCATGCACGAAGTAGATGC
CGACGGAGATGGGCTCATCAATTATGAAGaatttgttgAAATGATGGCTT
CGAATAAATGAATGGGAATCATCAAAGCTTCGATGTCATCAAAGGTGTAA
TtaattttaatagtttttaaaTCGTTAAAGGTTAATATATATATAGAATG
AAGATTAAAATGACTAAAACTAAATGGATTTGAAATGTCGAGgagttagt
tcatctaatgtttccagctcacccaaataaaGACTTATACGCATGCCTAA
TTTATccttcttttaaaccacatgcagttaattcccgtgataaacaaaaa
gGAATGAATCTGTAGTGGTGGTTGAGTTACTTTcagtcggggttgtggac
ggcgaaatatgcCATCTTtgataaagtctgtctcaaaataatttgcagct
gagacaaaaattcctgtaacttttgatagaattcgaatcaaaaatcaaaa
aattttcaaaaatattcattcaatcaaaagatatctaacaaaaattattg
ctggttgactctataaagtagtaaaaaacgacaaaaaaacagccttttgt
caaTCAACCAATGACTAACTTTgtt
Run BLAST on NCBI

protein sequence of TCONS_00022080-protein

>TCONS_00022080-protein ID=TCONS_00022080-protein|Name=TCONS_00022080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MKISKKPGIWLLTKFNVVFRKKVSGRKNTNEFATSRQHSQQPYDNVQVDT
LSEEQILDFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTENELEDMIN
EVDFDGSGTIEFPEFITMMARKLRDTDDDIQEAFRVFDQRGTGHISAKEL
HSVMTNLGGEYLTPQEIDEIMHEVDADGDGLINYEEFVEMMASNK
Run BLAST on NCBI

transcript from alignment at sc0000403:243970..252203-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022080 ID=TCONS_00022080|Name=TCONS_00022080|organism=Clytia hemisphaerica|type=transcript|length=8234bp|location=Sequence derived from alignment at sc0000403:243970..252203- (Clytia hemisphaerica)
TTTAAAGAAAAAGTTTCATGGCCAAATTTAGGCCAAATTTTGGATTTGTG
GAAGTTGCTTCATTAGATTTTATCTTTACATAAATGAAAGGATTGTTTTT
TGTTTGTGCCCAAAACTTACCATGGCTCCTTAGCTCTAAAACATCGAACA
TTTTCATCTTCATTCAGCATGTTTCCGACTATCTCTCTCAGGTAGGTCCA
TTCAACATGTTGTTTGTTCTTTTTCAATCTTCCTTGGTCCGTCTCGCGTA
CTTCTTTCTTTTCATCATCGGTTATAAATATTTCATCCTTCACTTGAAAG
TAAATTTATTATTCCACAAAAAAGTAGATAAAAGAAGAAAAGAAAGAACA
CAAAACAAAACAACAGCAATAAACAGTCGAAAAAAAAGAAGAAGAATAAT
AATAATAAAGAAGAAATACTTAGTTCTTTATTTTTTTATTTTTGTCATAA
AATAGAAAATGCTTGGTATAATAAACTAGTCTTTATCTTGAACTTAACTT
CCTATGCTTCTATTATTTGGTATTTATTAATACGTTTGACCTCTGGCTGG
CATTGCTAAACGGACGGTATTTTCAAGTTTCATGTAGTGCGTGGAAACCG
TCCCCCGTGATTACGCTACCATTATGAAAATCAGTAAGAAACCAGGTATC
TGGTTGTTGACCAAGTTCAATGTGGTTTTCCGTAAGAAGGTCAGCGGCCG
GAAGAATACAAACGAATTCGCGACCAGTCGACAACACTCACAACAACCTT
ATGATAATGTTCAAGTAAATTACTTTTTTGATTAAAGTACTTTTTAGTTT
TATGAAGTGGTACACATTTTTTTTATAAGCAACCGAATTGCTAAGGGTCC
AGCCCTGAGAATGGCCAAAAGATTAAGCAACTTGGCCTGAAACTGAACCA
GGAAAGTAACCATTAAGCATTATTAAGCATTTAAATGGTATTAAAATGTA
TACCGATGGTATTTGAATACCAAATTTATTTGGCAATTTTAAGCAACTTT
TTGGCTGAAATCCGGAAAATCCTTAGCAACTCCAGCCCTGAGCCGAAAGT
TGGGGTTGCTTATATGTGTCGGATATTAGTGCGACGTACTTTTGACTTAG
AAAGTACGACCTTTGAAAATAGGAAAATTTCGATTTTTGTAATTTGAGCG
TCATTAGTAGATGGTAGGTTTTTTGGAACCCTTTGAAAGATTTAAGATGT
GAAAAGGCACCTTCGAAGAAAACGATTAAAGAAAGAAGAAGGGAAGTCAT
TGTGTTGGTTAGGCCATTCTAGTCCTACTTAACTATCAGCCTAGATTCCA
ATGGAGGTGCAAACGAATCGGGTGTTACTCGTAATACACCTTAAGTATTT
CTTTTAAACTTTTACGCCTAATGTTGCATACGAACGAACTAGGCTAGGTA
TAGGAGGGTCAAATTAAGCCAAATGTCTGAAGTCTTGCACTGGTACGTCC
ATAGATTACAAAGATTTGACGTCTCCGGTAAACTCGAAGCAAACCCTTTT
AGTGTAAGGGCTGATAAGTAGCGAATGCAACTATCATTCATATGTCTGAA
AACATTGTTTCAATGCTAACATAGGAGTCTGTTAAATGACGCGCCTTACG
CTCCTGAATTTTGACGCGGCCTCTTACGCGCCCTAAATTTTTGACGTGCC
TTACAGTATTACTACTATAAATTTTTGTAAATTTTGACGTGATTTTTATT
GCCCCCGGCACGTGAAAGGCGAATGTTCTGCAAAAAATTATTCAGAAAAA
AAGACGACAACAACGGCGGTTCATTTCATTTTTTCTGATTTCTAATCCAA
ATTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
GACACATGGTTTTATCAATATTTCATTTTCTGGTTGAATTCTCAGTGTGT
TATTTTCTTGCGAGTTCATACTTAATTGATTATGCCTTATTATTTTCCAA
ACTTTAGCTAAATTGTGCTTATAAGCGTTATGCTTATAAATAAATAAGAG
TGTAACGGTAGGGCGATTACTCAGGCTAAAAGTAGCATTCCTTATAAAAT
TATCATAAATTCATGCCCACGTTAAGCACAGTCCCTTACTTGCTTTGAAA
ATAATGCTTACCGAAAGCCTAATTCCCTCAAATCAAAAGTTATTGATTGG
TTTCTTATAAAGAAGATGCTTATAAGAAAAATAAATATGCTGACATTAAA
CACAATTCCTTACTTGCTTTGAAAAGAACTAATAGCGAGGTTAAATATCG
GGTTTGTCTAGAACACGTTTCCGTTCAGTTTCTCGTTCTAGAGCAAATCC
GATATTTTTGCCCGGGGTATGTCTGTCTAGCTTTCAGGTTAGCCTGTAGA
AAAATGCCGTAGCGCGAACGAAGGCTTCAAAAATTCGTCCGTCGTCCTGA
GTTATCTACTGATACTTAACCTCAGGGCGCGTCGGTAATAAGGCAAGTAA
GTAAGGCGCGTCAAAAATTTAGGGCACATCGATAATAAGGCACGTAAGAA
GGTGCGTCAAAACTTAAAGGCGCGTCGAAATTCAGGTGCGAAGGGCGCGT
GGGCGCGTGGGCGCGTGGGCGCGTAAGGCGCGTCATTTAACAGACTCCTA
ACATAGCATCCGTAGCATTCAAATGACGATAGATCCATGTAAACTGTAAC
CCCAAACTCGCCATTGATGCTAAGGTTGTATCGAATTTTGTTTCGAGGCA
ACGATAGAGCTCTTGCCGATGGTGCCGAACATTTTCATCTTCTACAAAGA
TTGCAAATTTTGGAAGAATGTTAGATTTTGTTCGTACAAGTCGTCTTTTC
AATGACCTCACAAGGCTTTATTTATGTTTTAGCTCAACAGCTAGACGATC
CTATCGTCTACATATTATCACTGGAAAAGGGAATAATTCAGGAAGCGGGA
TAAATTTGAAAACGAGTTTAGTTCGGGGCAGGGTAAACAGTGTCGGAGGT
GTTTACAGTATATACCTCTACCGTCACTATTTTTCCCGTAAACCGCTCTG
AAGCCCTGACTCTGTGCATATATACTTTCCCGCGTTTACTGACCCTCTAA
ACGGACGATAGCATCGTCTACCTCAACAGCACGCCAGACTTTCAAATGAT
CAATTCTGCAAATTCACCTATAGTTTCGCATGGATCTTTATTAGTACAAT
CCTTCAATTTCTTGAATTCCTGACCAATTTCATTTTTGATTTTTAGGTTG
ACACTTTGAGCGAAGAGCAGATTTTAGGTGAGCAATTTTGTAATTTTGAC
TTTTAGAACACTCCCTTCTCACGGGTCTATGTAGGTTTCTAGGTAGGATT
TTTCCAGCCAGTGAGCAGTGAGGGTTGGTTTATTTGATTATTTTCAACGG
GGACAAAAATCGGAGGGTAATTTTCCAACAGGACCATAAGTGTGCCAGTT
TTTCCAGTGGGAAGGGTTCCCAGTGGGTCTGTGAGAAGTTGGTGTTTTTA
AAGTTCTTGCTTATTACCCAGTTGCCCAGTCTTATTGCGTGTAAGCCTTC
CATGAGCGAAACTGGATAATCGAGGAAAAGTGTTAATAATATTTCTAAAG
TCTTTTTCAAGCCATAATCTTATCATAAGACATGGTAAAGATAAGGCAAA
TTGTTTATCATTTTTGTGGTCAACCTTGTTTCATACGAACGATAACATCT
TGACCATCCAATCAAGGGGTTCCCTTTTTTCTTTATAACCTCTTTATTTG
CTCATGACGTCACGTATAATACACCTTTTCGACCGTAGGCGCGTACCACT
TTATTATTTAATTATCTCCCTTAAACTCGATTCAATCCTTTTTTTACCCC
TTTTTCCATTGTCTATAGGTGCGAAAAAAGCCTGGGACGGTTTTAGGGTG
GTAAAACGGACAAAAAAATACCCGCGCGGTAATTGGCGGCTACGGTCGTA
AAGATGTTTTGAAACGTTCCTTTAGTTGAAATCAACTTTTTCAACAATGT
GGTTTGATAAATTCATTTCAATTTCCGTGCACATCGAAAAAGCTAATTTC
TTTTGATCCAGTCCAATCCTAATATTTTAATGTGGTTTTATATCAATTTT
TTAAAATTGACGAACTAATATTCCAATTAACCAGACTATTTGCTAAGTTA
GTGCCGAAAATATGTTTAACATCTACAATTTACTCCCCATAACTCGATCA
TCAATAATGGTTCGATTTATAGAGGCTTTAACAGAAGGGAAGTTCCCTGA
AAGGGGCGAAGAAAGACATCAGAGGTTCAAATTATTAATGAAAACCATTT
TTTTTCTCAATTATTTATCAAAAGACTTCAAAGAAGCCTTCGCGCTTTTT
GACAAAGACGGAGATGGTACAATCACAACAAAAGAACTTGGCACCGTCAT
GAGAAGTCTGGGACAGAATCCAACTGAAAACGAACTTGAAGATATGATTA
ATGAAGTCGATTTTGACGGTACCGTTTTTTTATCGAAGTGGCTATCCCTA
TCAGACTTAATTTGATATTCCTGTACAAACCTTCTGTCCTAGAACTTCAC
ACTTCTGTGTCAGAGACAAATCGCCACCCCCCCTACCCACTTACAAGTTC
GGTCACACAGTTGTATCGGGTGGGATACCCAAGTGTCATTTCTATACATT
GGAGAGAAAGGTTTATTTTCATTCCCACCATTGAAAAGCATTGAAAGGCA
GATTCTCATATTGGAATTTCGGAACTGTAAAAAAAAAAAGAATTTGAAAG
GATGTCTCGTTGAAAGAGGTTTCATTTGACATTTATCTACTCATCATTCC
AGTTGACTATAAAATGCAATGGTGATAGTGGGTGACTGAGGCAGAAAATT
ATTGTGGACTTAAGGGAAAAGCTCTCTTTTTGCAGTTTATACGGGTTAAG
AAAAAGAACGCTGGGGGTTTTATTGGCTCTGTAACGGTCGACTTGATTCT
TCGACTTTAAATCGGATGATTTTTACCCTTTTGAAAGTTTCTGTCCGCAA
AGAAGTTCAAAAGTGTACTTTATTTTTCCCCATAAGATAAATAAAACTAT
AATAGACAGTGCACGTATTAACACGTATTTACACTTTTAAAGACGGCGGA
GCGACTGCATCGATTTGGAATAACCCACAGTTTTTAACCGCAAAGTTGAG
GACGGTAGAAGTGCTGAGTCAGTCAGGACGTAGACAAATCGGAAGCTACC
CGTCTCCGCCGAAAACAAACAAACACACACTCGCTAATAAACCTTTTTAG
TTGAGTAAAGATTGTAGAGATTAGACTATGCTTCACTCGCTAGATTACTC
TTATTTTTATGCTTGTTTAGCCTTATGGGGACCCATGAAGGATTAGAAAG
TATGGTATCAAAGGAAAATATAGCACACTTTTCCCCTTGACATAATCTGA
AAAACACGTTTTTATTTTGAAGTAGAGCTTACTCAAGGAATCATATAAGT
CATCATCAGTAGGTGATCGTCTTAAAAACATTATTCCATGTTTTTGGTAT
AGTAACACGACACGCGATTGCCATACATAGCCCACCCTCACCCTCACCCT
AGTGGCCAATCTTTTTTGGGGGGATGCCGCAAGACAAGAGGTGCAAAAAG
GCGCCTCTGATTACTAATTGTGGCACCCCTTTGCTTTTTAACAATTTTGA
GCCAAAAAGAGAAAAAATGCCTAAAAATTTTCATACTCGATTTAGTCGCG
TAATTTTTACAAAGATATTTTACTTTAAAAAGGGCCTCCCCAATTCGCTA
CTACGCTACTGACCTTTCCGGAACTTATAATTTGATTTCAAATGAAATAA
CACTTTGCTATCATATTCAATACTACAGGATCAGGGACGATAGAATTTCC
CGAGTTTATAACAATGATGGCGCGAAAGTTGCGAGACACAGACGATGATA
TACAAGAAGCATTCCGCGTCTTCGATCAAAGGGGTATGTGTTTTCTTTCT
CTGATTTAAACTCTTTTGGGTTGATGTTTAAGAAAATCAAACAAAGAGGT
TTTTGAAAAATTCTTCCTATAAGGCTAATAGCTTAAATGACAAATAGTAT
AACCAGAGCTTCATTTTTGTTTCGGTAAAAACTATTTATTCGATCTCACT
CTCAAGAGGTCATCATCAGAGTTAACGGGGTTTTTTTATTACAGAGAGCC
TCCTGTAACACATACAAAGTTAAGAAAATCTATTTCATTTCAAATAATAA
TAAAAAAATCGAAAAGTGAAGGTGCCATACTAAAGAAAGTTTCAAAGCTT
CAAATGGTATCGCATATGAAAGCTTGGATAGTTCTATAGATAGTTCTATA
TAACCTTAAAATTCAACACGAAACGGTTACACAACTGGTGCTTCTGTGTC
TTCTTGCTAAAATAAGTTTTAGATTTGATCTTCGAAAATAAACAGGAAAG
GATCACATAGCAGAAATTGGGACCAGGAGAGCTTCAAAACATTCCACTTT
CGTTTTCCGTCTCATTTATGAACTGTTTTAAAAAACGAGGCATGTTGGGT
ACTTATTTTTTCTCAAACTGAATGTATTTTAGCTATCTTAGTACAATGAA
AAACGAATGAAAACGGTATAGGAAATCACACGTGTATTCCGATCGGAGTA
ATAACTAATACTTGCTTAGGCATTAAAACTCGCCAGTAGCGTTGTTCGGT
TCTAGCCGTAATTTGGCCAACAAAACCCCTAAAGAAATTAGGTGAAAAAG
AGTCTGGTAATAAGAAGAGTTGTCTTTCACTTTTTCATCAGGTACAGGAC
ATATCAGTGCAAAAGAATTACACAGTGTGATGACGAACCTCGGTGGAGAA
TATTTGACACCTCAAGAAATCGATGAAATCATGCACGAAGTAGATGCCGA
CGGAGATGGGCTCATCAATTATGAAGGTACATAATATTTGAATGTTCAGC
TAATGTTTTTGTGTACGTCAAATGGACGTTTTATGTCAGTTTGATGCCAA
CTAGCCTGTACCAAATTCTTTTTGCGGATGGAGATGGGCTCATCAATTAT
GAAGGTACAATATAATGGGCTCTTCCCGAAAATTTTTGTACATGGGGGGT
GGAGGATATATTGGAAATTTTGTCCGGGAGTAGTGAACATTTTACTAGAT
TTGCCTTGTTTGAGGGACAAAACCACTCTATTTAGGGGTAATTATGAATG
TCCGGGGGGTCAAAAGTCACAATGTCCGAGGGGTAAATTACCAAAAAATG
TTATATCCTCCACCCCCAATATTCAATTTTTTTCTGGAAGAGCCCAATGT
TGTTTGAATGTTCAGCTAACATTTTTGTGTACGTCAAATGGACGTTTTAT
GTCAGTTTGGATGCAACTAGCCTGTACCAAATTATTTTATGAAATTGATT
TTCAAATAAGCAAGAAAATTTTCGTGGTTGTTCGGGGTGGTACTGGCTAG
ATACCAACTAAAGCTTGAGATAATATTTGTACGGTGTACGGTGTACACAT
TCATTGAGTTTAAAGCCCTGAACTAGAGAACTAGCTAGAGAGGAATCTTC
AACCTTTCTCAAGCAAGAGAAAGTGAAGCCTTTTTTGCACTCACCCAGCT
TTTATGAGTTTTAAATTATTCTCTTATTAAATTTTTAGAATTTGTTGAAA
TGATGGCTTCGAATAAATGAATGGGAATCATCAAAGCTTCGATGTCATCA
AAGGTGTAATTAATTTTAATAGTTTTTAAATCGTTAAAGGTTAATATATA
TATAGAATGAAGATTAAAATGACTAAAACTAAATGGATTTGAAATGTCGA
GGAGTTAGTTCATCTAATGTTTCCAGCTCACCCAAATAAAGACTTATACG
CATGCCTAATTTATCCTTCTTTTAAACCACATGCAGTTAATTCCCGTGAT
AAACAAAAAGGAATGAATCTGTAGTGGTGGTTGAGTTACTTTCAGTCGGG
GTTGTGGACGGCGAAATATGCCATCTTTGATAAAGTCTGTCTCAAAATAA
TTTGCAGCTGAGACAAAAATTCCTGTAACTTTTGATAGAATTCGAATCAA
AAATCAAAAAATTTTCAAAAATATTCATTCAATCAAAAGATATCTAACAA
AAATTATTGCTGGTTGACTCTATAAAGTAGTAAAAAACGACAAAAAAACA
GCCTTTTGTCAATCAACCAATGACTAACTTTGTT

Coding sequence (CDS) from alignment at sc0000403:243970..252203-

>TCONS_00022080 ID=TCONS_00022080|Name=TCONS_00022080|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000403:243970..252203- (Clytia hemisphaerica)
AATTTGTTGAAATGATGGCTTCGAATAAATGAGTACAGGACATATCAGTG
CAAAAGAATTACACAGTGTGATGACGAACCTCGGTGGAGAATATTTGACA
CCTCAAGAAATCGATGAAATCATGCACGAAGTAGATGCCGACGGAGATGG
GCTCATCAATTATGAAGGATCAGGGACGATAGAATTTCCCGAGTTTATAA
CAATGATGGCGCGAAAGTTGCGAGACACAGACGATGATATACAAGAAGCA
TTCCGCGTCTTCGATCAAAGGGACTTCAAAGAAGCCTTCGCGCTTTTTGA
CAAAGACGGAGATGGTACAATCACAACAAAAGAACTTGGCACCGTCATGA
GAAGTCTGGGACAGAATCCAACTGAAAACGAACTTGAAGATATGATTAAT
GAAGTCGATTTTGACGGTTGACACTTTGAGCGAAGAGCAGATTTTAGATG
AAAATCAGTAAGAAACCAGGTATCTGGTTGTTGACCAAGTTCAATGTGGT
TTTCCGTAAGAAGGTCAGCGGCCGGAAGAATACAAACGAATTCGCGACCA
GTCGACAACACTCACAACAACCTTATGATAATGTTCAAAATTTGTTGAAA
TGATGGCTTCGAATAAATGAGTACAGGACATATCAGTGCAAAAGAATTAC
ACAGTGTGATGACGAACCTCGGTGGAGAATATTTGACACCTCAAGAAATC
GATGAAATCATGCACGAAGTAGATGCCGACGGAGATGGGCTCATCAATTA
TGAAGGATCAGGGACGATAGAATTTCCCGAGTTTATAACAATGATGGCGC
GAAAGTTGCGAGACACAGACGATGATATACAAGAAGCATTCCGCGTCTTC
GATCAAAGGGACTTCAAAGAAGCCTTCGCGCTTTTTGACAAAGACGGAGA
TGGTACAATCACAACAAAAGAACTTGGCACCGTCATGAGAAGTCTGGGAC
AGAATCCAACTGAAAACGAACTTGAAGATATGATTAATGAAGTCGATTTT
GACGGTTGACACTTTGAGCGAAGAGCAGATTTTAGATGAAAATCAGTAAG
AAACCAGGTATCTGGTTGTTGACCAAGTTCAATGTGGTTTTCCGTAAGAA
GGTCAGCGGCCGGAAGAATACAAACGAATTCGCGACCAGTCGACAACACT
CACAACAACCTTATGATAATGTTCAAAATTTGTTGAAATGATGGCTTCGA
ATAAATGAGTACAGGACATATCAGTGCAAAAGAATTACACAGTGTGATGA
CGAACCTCGGTGGAGAATATTTGACACCTCAAGAAATCGATGAAATCATG
CACGAAGTAGATGCCGACGGAGATGGGCTCATCAATTATGAAGGATCAGG
GACGATAGAATTTCCCGAGTTTATAACAATGATGGCGCGAAAGTTGCGAG
ACACAGACGATGATATACAAGAAGCATTCCGCGTCTTCGATCAAAGGGAC
TTCAAAGAAGCCTTCGCGCTTTTTGACAAAGACGGAGATGGTACAATCAC
AACAAAAGAACTTGGCACCGTCATGAGAAGTCTGGGACAGAATCCAACTG
AAAACGAACTTGAAGATATGATTAATGAAGTCGATTTTGACGGTTGACAC
TTTGAGCGAAGAGCAGATTTTAGATGAAAATCAGTAAGAAACCAGGTATC
TGGTTGTTGACCAAGTTCAATGTGGTTTTCCGTAAGAAGGTCAGCGGCCG
GAAGAATACAAACGAATTCGCGACCAGTCGACAACACTCACAACAACCTT
ATGATAATGTTCAAAATTTGTTGAAATGATGGCTTCGAATAAATGAGTAC
AGGACATATCAGTGCAAAAGAATTACACAGTGTGATGACGAACCTCGGTG
GAGAATATTTGACACCTCAAGAAATCGATGAAATCATGCACGAAGTAGAT
GCCGACGGAGATGGGCTCATCAATTATGAAGGATCAGGGACGATAGAATT
TCCCGAGTTTATAACAATGATGGCGCGAAAGTTGCGAGACACAGACGATG
ATATACAAGAAGCATTCCGCGTCTTCGATCAAAGGGACTTCAAAGAAGCC
TTCGCGCTTTTTGACAAAGACGGAGATGGTACAATCACAACAAAAGAACT
TGGCACCGTCATGAGAAGTCTGGGACAGAATCCAACTGAAAACGAACTTG
AAGATATGATTAATGAAGTCGATTTTGACGGTTGACACTTTGAGCGAAGA
GCAGATTTTAGATGAAAATCAGTAAGAAACCAGGTATCTGGTTGTTGACC
AAGTTCAATGTGGTTTTCCGTAAGAAGGTCAGCGGCCGGAAGAATACAAA
CGAATTCGCGACCAGTCGACAACACTCACAACAACCTTATGATAATGTTC
AAAATTTGTTGAAATGATGGCTTCGAATAAATGAGTACAGGACATATCAG
TGCAAAAGAATTACACAGTGTGATGACGAACCTCGGTGGAGAATATTTGA
CACCTCAAGAAATCGATGAAATCATGCACGAAGTAGATGCCGACGGAGAT
GGGCTCATCAATTATGAAGGATCAGGGACGATAGAATTTCCCGAGTTTAT
AACAATGATGGCGCGAAAGTTGCGAGACACAGACGATGATATACAAGAAG
CATTCCGCGTCTTCGATCAAAGGGACTTCAAAGAAGCCTTCGCGCTTTTT
GACAAAGACGGAGATGGTACAATCACAACAAAAGAACTTGGCACCGTCAT
GAGAAGTCTGGGACAGAATCCAACTGAAAACGAACTTGAAGATATGATTA
ATGAAGTCGATTTTGACGGTTGACACTTTGAGCGAAGAGCAGATTTTAGA
TGAAAATCAGTAAGAAACCAGGTATCTGGTTGTTGACCAAGTTCAATGTG
GTTTTCCGTAAGAAGGTCAGCGGCCGGAAGAATACAAACGAATTCGCGAC
CAGTCGACAACACTCACAACAACCTTATGATAATGTTCAAAATTTGTTGA
AATGATGGCTTCGAATAAATGAGTACAGGACATATCAGTGCAAAAGAATT
ACACAGTGTGATGACGAACCTCGGTGGAGAATATTTGACACCTCAAGAAA
TCGATGAAATCATGCACGAAGTAGATGCCGACGGAGATGGGCTCATCAAT
TATGAAGGATCAGGGACGATAGAATTTCCCGAGTTTATAACAATGATGGC
GCGAAAGTTGCGAGACACAGACGATGATATACAAGAAGCATTCCGCGTCT
TCGATCAAAGGGACTTCAAAGAAGCCTTCGCGCTTTTTGACAAAGACGGA
GATGGTACAATCACAACAAAAGAACTTGGCACCGTCATGAGAAGTCTGGG
ACAGAATCCAACTGAAAACGAACTTGAAGATATGATTAATGAAGTCGATT
TTGACGGTTGACACTTTGAGCGAAGAGCAGATTTTAGATGAAAATCAGTA
AGAAACCAGGTATCTGGTTGTTGACCAAGTTCAATGTGGTTTTCCGTAAG
AAGGTCAGCGGCCGGAAGAATACAAACGAATTCGCGACCAGTCGACAACA
CTCACAACAACCTTATGATAATGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012381XLOC_012381Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022080-proteinTCONS_00022080-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022080-exon-sc0000403-1575043694:251440..252203TCONS_00022080-exon-sc0000403-1575043694:251440..252203Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1575043694:248827..248857TCONS_00022080-exon-sc0000403-1575043694:248827..248857Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1575043694:247636..247779TCONS_00022080-exon-sc0000403-1575043694:247636..247779Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1575043694:246171..246275TCONS_00022080-exon-sc0000403-1575043694:246171..246275Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1575043694:245228..245362TCONS_00022080-exon-sc0000403-1575043694:245228..245362Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1575043694:243970..244515TCONS_00022080-exon-sc0000403-1575043694:243970..244515Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1510915933:251440..252203TCONS_00022080-exon-sc0000403-1510915933:251440..252203Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1510915933:248827..248857TCONS_00022080-exon-sc0000403-1510915933:248827..248857Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1510915933:247636..247779TCONS_00022080-exon-sc0000403-1510915933:247636..247779Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1510915933:246171..246275TCONS_00022080-exon-sc0000403-1510915933:246171..246275Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1510915933:245228..245362TCONS_00022080-exon-sc0000403-1510915933:245228..245362Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1510915933:243970..244515TCONS_00022080-exon-sc0000403-1510915933:243970..244515Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1491911889:251440..252203TCONS_00022080-exon-sc0000403-1491911889:251440..252203Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1491911889:248827..248857TCONS_00022080-exon-sc0000403-1491911889:248827..248857Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1491911889:247636..247779TCONS_00022080-exon-sc0000403-1491911889:247636..247779Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1491911889:246171..246275TCONS_00022080-exon-sc0000403-1491911889:246171..246275Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1491911889:245228..245362TCONS_00022080-exon-sc0000403-1491911889:245228..245362Clytia hemisphaericaexon
TCONS_00022080-exon-sc0000403-1491911889:243970..244515TCONS_00022080-exon-sc0000403-1491911889:243970..244515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:243970..252203 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.255418	0.218964	0.617942	0.497466	0.227106	0.179462	2.45382	2.7702	13.7741	8.05337	8.90479	13.8219	3.72177	3.37879	0.956271	0.740802	3.67205	4.1305	4.77388	5.12111	9.48474	11.1933	2.8958	5.97893	2.77244	4.03424	0.710706	0.985774	0.186919	0.12983
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
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BLAST of TCONS_00022080 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.104e-66
Identity = 107/148 (72.30%), Postives = 128/148 (86.49%), Query Frame = 3 
Query:  765 VDTLSEEQILDFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTENELEDMINEVDFDGSGTIEFPEFITMMARKLRDTD--DDIQEAFRVFDQRGTGHISAKELHSVMTNLGGEYLTPQEIDEIMHEVDADGDGLINYEEFVEMMAS 1202
             D L+EEQI +FKEAF+LFDKDGDGTITTKELGTVMRSLGQNPTE EL+DMINEVD DG+GTI+FPEF+TMMARK++DTD  ++I+EAFRVFD+ G G+ISA EL  VMTNL GE LT +E+DE++ E D DGDG +NYEEFV+MM +
Sbjct:    2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00022080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM36.104e-6672.30Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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