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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022053 ID=TCONS_00022053|Name=TCONS_00022053|organism=Clytia hemisphaerica|type=transcript|length=3301bpRun BLAST on NCBI protein sequence of TCONS_00022053-protein >TCONS_00022053-protein ID=TCONS_00022053-protein|Name=TCONS_00022053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp MVTGDETNAARAFNRDALDPTLVEDKLIDVCKSLMSQTVDIDFDYKIERTRun BLAST on NCBI transcript from alignment at sc0000403:29207..51064- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022053 ID=TCONS_00022053|Name=TCONS_00022053|organism=Clytia hemisphaerica|type=transcript|length=21858bp|location=Sequence derived from alignment at sc0000403:29207..51064- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000403:29207..51064- >TCONS_00022053 ID=TCONS_00022053|Name=TCONS_00022053|organism=Clytia hemisphaerica|type=CDS|length=10752bp|location=Sequence derived from alignment at sc0000403:29207..51064- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022053 vs. Swiss-Prot (Human)
Match: CMTA1 (Calmodulin-binding transcription activator 1 OS=Homo sapiens GN=CAMTA1 PE=1 SV=4) HSP 1 Score: 90.1225 bits (222), Expect = 4.505e-18 Identity = 70/246 (28.46%), Postives = 108/246 (43.90%), Query Frame = 3
Query: 966 WIQXHKPGAVRLSVLCNSKTLSEEVDFTFVESSEKNWTEKIDHDDWLSISETTLADLLVKRISFISDMV---TGDETN---------------------AARAFNRDALDPTLVEDKLIDVCKSLMSQTVDIDFDYKIE----RTMTVLHLASALGYLKLIQLLMNWVESNPNKI-IQVEACPTCVDQFSLVPIMWASAKGHFTTTCVLHQWAESTIELKDACGCTSLSLAMESGHESLVEYLGRL 1616
+ H G V L V N++ +S V F + + T DWLS+ + +++R+ + + TG + + A A AL + E +++ VC+ +MS+ + I R MT+LHLA+A GY LIQ L+ W + + I +++E P VD FS P+MWA A GH VL++W I + D+ G L +A GH L E L L
Sbjct: 924 YCPAHDTGLVTLQVAFNNQIISNSVVFEYKARALP--TLPSSQHDWLSLDDNQFRMSILERLEQMERRMAEMTGSQQHKQASGGGSSGGGSGSGNGGSQAQCASGTGALG-SCFESRVVVVCEKMMSRACWAKSKHLIHSKTFRGMTLLHLAAAQGYATLIQTLIKWRTKHADSIDLELEVDPLNVDHFSCTPLMWACALGHLEAAVVLYKWDRRAISIPDSLGRLPLGIARSRGHVKLAECLEHL 1166 HSP 2 Score: 89.3521 bits (220), Expect = 8.650e-18 Identity = 68/188 (36.17%), Postives = 108/188 (57.45%), Query Frame = 3
Query: 1938 PASPAQNALQSPFNRQMRE----------TAEFCEFFYKA--KKIEKDFAXXXXXXXXXXXXYRAANVIQTAYKAYKERRKQRDQEFSSATLIQSYYRRYKQYAAFKKMQKGAVLIQNQYRAHREKSK--KKYEAASLIQTNWRRYR---------------QRKCTKSEANKLEQQASRRVNRYLQQ 2414
P +P+ N SP + E A++ EF + +K+E +FA+LTL+D EQ ELY AA ++QTA++ YK R + QE ++A +IQ YR+YKQYA +KKM + A+LIQ+++R++ E+ K + AA LIQ +R Y+ Q+K S K + QA+R++ R+L++
Sbjct: 1463 PLTPSSNTSLSPVGSPVSEIAFEKPNLPSAADWSEFLSASTSEKVENEFAQLTLSDHEQRELYEAARLVQTAFRKYKGRPLREQQEVAAA-VIQRCYRKYKQYALYKKMTQAAILIQSKFRSYYEQKKFQQSRRAAVLIQKYYRSYKKCGKRRQARRTAVIVQQKLRSSLLTKKQDQAARKIMRFLRR 1649 The following BLAST results are available for this feature:
BLAST of TCONS_00022053 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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