TCONS_00022032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022032
Unique NameTCONS_00022032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022032 ID=TCONS_00022032|Name=TCONS_00022032|organism=Clytia hemisphaerica|type=transcript|length=1842bp
CAAATTAGGGCAACAGTATCACGAGAGAGTCATTTTTATCATATGTAGAA
ATAACATTCAAGCACTCTTAAGATTTTGCCTTTAAAAGTGCCTCTCGAAT
CATTGTGTCTTTTAGACGCCACATGCATTTTTTTCTAGGGCATTTTGAAG
TGTGTGATTTACCGCAAATTTTAAAGTAAACAATACACACGCATCATAGT
Atattgtattttcatttcaattatttcagcaataatttaaaaaaattgat
gtataaataagcgagggagctaatATCCCAAAAACAGAAAAGCAATTCCC
AATGGAAAACTGGTCACACGTTTATAACTCAAGAACAACTCGACAATATA
GAAGAGAAGACGATATGGAATCATCATTCGATCGCTCTTCAACATGTAGT
TCATTCGATTCTGAATCAACTGCGTCTACCTCATCTTCGCATTCACAATA
TTCGATCTGTAAAAGGAACGGTCGGAGGGGTGGCGTTCAAATGAAAAGCA
ACGGTCCTGATTTTACGGTCAAGAATGGACAATGGACATTATGGGTTGAC
ACTTTACCACGTGCAGAACTAAACAATTACAAAGTAGCGTTTTCAATGTT
CGATCGCAAACGTAAAGGAAGGATAGGAGCACGACATCTTGGTGAATTAA
TGAGAAGCTTAGGTTACAATCCACTGGAACAAGAACTTAGTGATCTCATC
GACGAATTTACTGACCGAAATTCCAGTAGGATAACGTTCCCTGAATTCGT
TACCATCATGGCACAGAAACGACGCTCTTCTGATCAATACATTCGCGACA
CGTTAGACGTCCTCGATAAAGAAGGCAAAGGATTAGTACCAATCACTGAC
CTCCAAAAAAACCTTGCCACTATAGGTGATCAATTGAAGCCTGAAGAAAT
AGCAGAAATTTTCACTGATCTCGATATAGATGACGATGGAAATGTTTCTT
ATGACGaTCTTGTCGAAATGATATCAACAGCTCCAGAGGTTTTCGACGAA
CCTGAAAAACAACGAACGCAACGCAATCGAAAGATGTCTGAATACACCGT
AAAAGGCGCCCTTAAAAGCTTTTTTGGAACCTGACCCCAGAGTGATGTAT
GCCAATTTTGAGAGAGGTGACACCAGCTGAGATATGGTACTCATTGCATT
TCCTTTAGATCGTGTTGTGCTACTGAACGAGCTGTCATCTCCAAGTCTAC
AAGATTCTCGACACGTTACCTGATAATGGATGGTTTAACGACCACAGACG
AATTTTAatcaaattcaaacaaaatatgGACAAGATTAGttttaaaaatg
gtttttgAAGGACAACAATATCTTTTCTGGTGCTGGAAACATGACAACAA
TGGCGATATCAAATGAAATCACTGCTGGATTGTCCAAGATTCTGGATTCT
TTATACGGCACACAACTATCTATTTTTGATCTACTTTACAGTGTGTCTAG
ATAAGCTTAACAGAATCTATTTTATATAAAACTTGTCAACTGTATTTGAG
TACTAGTAAtgtacagattttctatttacTAAGGAAATTCAGTTCAAATT
GCAATTTAATAGGTTTGATTAAAGCGGGGCTAATAAAATAATGTCTTAGC
ATGAAAGccgttttgaagatttttctatGAATAAATCCTGGACACACTGT
ATGCAAGATAGTATTTGACTTTTCGGATCCTAGCTTCAACTACTACGAGA
ATTCCTGCATCATCAGTTGGACCAGAAGGGATTCAATAGttgtaaaattg
aaatatgaaaattgaaaaataactatttttgaaaagaaaaattttttata
taatatttctaaaatgagaattttaaaatttcaaaatttttt
Run BLAST on NCBI

protein sequence of TCONS_00022032-protein

>TCONS_00022032-protein ID=TCONS_00022032-protein|Name=TCONS_00022032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MENWSHVYNSRTTRQYRREDDMESSFDRSSTCSSFDSESTASTSSSHSQY
SICKRNGRRGGVQMKSNGPDFTVKNGQWTLWVDTLPRAELNNYKVAFSMF
DRKRKGRIGARHLGELMRSLGYNPLEQELSDLIDEFTDRNSSRITFPEFV
TIMAQKRRSSDQYIRDTLDVLDKEGKGLVPITDLQKNLATIGDQLKPEEI
AEIFTDLDIDDDGNVSYDDLVEMISTAPEVFDEPEKQRTQRNRKMSEYTV
KGALKSFFGT
Run BLAST on NCBI

transcript from alignment at sc0000403:234607..237913+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022032 ID=TCONS_00022032|Name=TCONS_00022032|organism=Clytia hemisphaerica|type=transcript|length=3307bp|location=Sequence derived from alignment at sc0000403:234607..237913+ (Clytia hemisphaerica)
CAAATTAGGGCAACAGTATCACGAGAGAGTCATTTTTATCATATGTAGAA
ATAACATTCAAGCACTCTTAAGATTTTGCCTTTAAAAGTGCCTCTCGAAT
CATTGTGTCTTTTAGACGCCACATGCATTTTTTTCTAGGGCATTTTGAAG
TGTGTGATTTACCGCAAATTTTAAAGTAAACAATACACACGCATCATAGT
Atattgtattttcatttcaattatttcagcaataatttaaaaaaattgat
gtataaataagcgagggagctaatATCCCAAAAACAGAAAAGCAATTCCC
AATGGAAAACTGGTCACACGTTTATAACTCAAGAACAACTCGACAATATA
GAAGAGAAGACGATATGGAATCATCATTCGATCGCTCTTCAACATGTAGT
TCATTCGATTCTGAATCAACTGCGTCTACCTCATCTTCGCATTCACAATA
TTCGATCTGTAAAAGGAACGGTCGGAGGGGTGGCGTTCAAATGAAAAGCA
ACGGTCCTGATTTTACGGTCAAGAATGGACAATGGACATTATGGGTAagt
tgaattttcttttcataaatCCTTTGTTCTTATTGTTCTTATTTCCTAGC
CTTCTACCGATATTCGGGTCGACACGATATGAACAttattcttttaaaat
aaaGGCAACTCCGCTTTAGTTAGATTTTAAGTTTGGGTAAATTTTCCATG
ACAACGATATTACATGAACTTCTGGATATTAAAAGGGCCTTAAAAACCCT
CGATTTGTTAGACTGTCTAAAAGTTCTGGATATATCTGGGCTATTCACGT
ACAATATCTATTTGTAAACGACTTAACCTCaaaacgatttttttttaatt
tcaactttAGGTTGACACTTTACCACGTGCAGAACTAAACAGTAAGTTTA
GTTACCTATTCAGGTTTCTTTCAAACATTTCAATGCAAAACAGGGTGTCA
ATAGGACCTTGAAAACCATGCACATGTTAAAAATGAATCATCCACCCTCA
AAAACCTTTGAAGATTATGTATTTTCTTGGAGAgactttgaaaactttga
aaaattcctGAAAACCTTAAAGGTTTCTacaattttaatcaatttgaGTC
GTACCCCTAAAATGAAAACATCGCAGGTTTAGTACtcgtgattttttgaa
aaaaattacagaTGTCAAGTCTATATAGAGCCATCTTATAGAAATTGATT
CTAatgtaaaatatttattattttctttatagATTACAAAGTAGCGTTTT
CAATGTTCGATCGCAAACGTAAAGGAAGGATAGGAGCACGACATCTTGGT
GAATTAATGAGAAGCTTAGGTTACAATCCACTGGAACAAGAACTTAGTGA
TCTCATCGACGAATTTACTGACCGAAGTAAGTTTGTTAGCCTGGTGAACC
ATGCAACTTATTCTCAGTGTAATAAAAAAGAAACCGCATGCGTACAATAT
CCGTAAATCATATAGCGCATCGTAGCTTTAAAGTCATTGTTTGAATTTTA
ATGTTTGCTTCGAATAAGTATTCATTCACAACTTTAACCATCATATTTTT
ACCAAGTGACTGAATGGTAGCTTAGATTTCTATATCACTTTGTCACCGAT
TTTTGATATtgcaaaactttttactttttttttaactttttttaattcta
ttgAAAAATCAGTTATTCCATATCTGGCACAAAAGTTAGTTAAGATTGAA
ACCCAACTATATTTCAAACTCTATAAACAGATTTCTTACATATTTATAGA
TTCCAGTAGGATAACGTTCCCTGAATTCGTTACCATCATGGCACAGAAAC
GACGCTCTTCTGATCAATACATTCGCGACACGTTAGACGTCCTCGATAAA
GAAGGCAAAGGATTAGTACCAATCACTGACCTCCAAAAAAACCTTGCCAC
TATAGGTGATCAATTGAAGCCTGAAGAAATAGCAGAAATTTTCACTGATC
TCGATATAGATGACGATGGAAATGTTTCTTATGACGGTaagaatttttca
gattcaaatTGGACCAATTTTGTGTATCCGGCTAAGATTTCGTCTCAATC
CCAGGCTATAAAGCCTTTTACAAATTATGATATAATATCTTATGATAGTA
TTCGAATATACCTGGTGTGCCCACACCCCTATATCACTGAGCCAATAGCC
GATTTCACTAAACCTCCGTAAATTCCAAAGTTTCAGTGTATCTACACCCC
TTtgtattcaatgtaacaaacACCTCCATGTCTCACTCAACCAGGGATGA
CTTCCAAAGAGTGAGTGGTGCTTGATTATATCTTTGTACCTCCTTAATTG
CCAACAATGAGCTGTTGAAGTGATTTGAAGAGaagatttcaatttgaatt
tcttttcacttttttacagaTCTTGTCGAAATGATATCAACAGCTCCAGA
GGTTTTCGACGAACCTGAAAAACAACGAACGCAACGCAATCGAAAGATGT
CTGAATACACCGTAAAAGGCGCCCTTAAAAGCTTTTTTGGAACATGACCC
CAGAGTGATGTATGCCAATTTTGAGAGAGGTGNTTTTTTTGGAACCTGAC
CCCAGAGTGATGTATGCCAATTTTGAGAGAGGTGACACCAGCTGAGATAT
GGTACTCATTGCATTTCCTTTAGATCGTGTTGTGCTACTGAACGAGCTGT
CATCTCCAAGTCTACAAGATTCTCGACACGTTACCTGATAATGGATGGTT
TAACGACCACAGACGAATTTTAatcaaattcaaacaaaatatgGACAAGA
TTAGttttaaaaatggtttttgAAGGACAACAATATCTTTTCTGGTGCTG
GAAACATGACAACAATGGCGATATCAAATGAAATCACTGCTGGATTGTCC
AAGATTCTGGATTCTTTATACGGCACACAACTATCTATTTTTGATCTACT
TTACAGTGTGTCTAGATAAGCTTAACAGAATCTATTTTATATAAAACTTG
TCAACTGTATTTGAGTACTAGTAAtgtacagattttctatttacTAAGGA
AATTCAGTTCAAATTGCAATTTAATAGGTTTGATTAAAGCGGGGCTAATA
AAATAATGTCTTAGCATGAAAGccgttttgaagatttttctatGAATAAA
TCCTGGACACACTGTATGCAAGATAGTATTTGACTTTTCGGATCCTAGCT
TCAACTACTACGAGAATTCCTGCATCATCAGTTGGACCAGAAGGGATTCA
ATAGttgtaaaattgaaatatgaaaattgaaaaataactatttttgaaaa
gaaaaattttttatataatatttctaaaatgagaattttaaaatttcaaa
atttttt

Coding sequence (CDS) from alignment at sc0000403:234607..237913+

>TCONS_00022032 ID=TCONS_00022032|Name=TCONS_00022032|organism=Clytia hemisphaerica|type=CDS|length=4698bp|location=Sequence derived from alignment at sc0000403:234607..237913+ (Clytia hemisphaerica)
ATGGAAAACTGGTCACACGTTTATAACTCAAGAACAACTCGACAATATAG
AAGAGAAGACGATATGGAATCATCATTCGATCGCTCTTCAACATGTAGTT
CATTCGATTCTGAATCAACTGCGTCTACCTCATCTTCGCATTCACAATAT
TCGATCTGTAAAAGGAACGGTCGGAGGGGTGGCGTTCAAATGAAAAGCAA
CGGTCCTGATTTTACGGTCAAGAATGGACAATGGACATTATGGGTTGACA
CTTTACCACGTGCAGAACTAAACAATTACAAAGTAGCGTTTTCAATGTTC
GATCGCAAACGTAAAGGAAGGATAGGAGCACGACATCTTGGTGAATTAAT
GAGAAGCTTAGGTTACAATCCACTGGAACAAGAACTTAGTGATCTCATCG
ACGAATTTACTGACCGAAATTCCAGTAGGATAACGTTCCCTGAATTCGTT
ACCATCATGGCACAGAAACGACGCTCTTCTGATCAATACATTCGCGACAC
GTTAGACGTCCTCGATAAAGAAGGCAAAGGATTAGTACCAATCACTGACC
TCCAAAAAAACCTTGCCACTATAGGTGATCAATTGAAGCCTGAAGAAATA
GCAGAAATTTTCACTGATCTCGATATAGATGACGATGGAAATGTTTCTTA
TGACGaTCTTGTCGAAATGATATCAACAGCTCCAGAGGTTTTCGACGAAC
CTGAAAAACAACGAACGCAACGCAATCGAAAGATGTCTGAATACACCGTA
AAAGGCGCCCTTAAAAGCTTTTTTGGAACCTGAATGGAAAACTGGTCACA
CGTTTATAACTCAAGAACAACTCGACAATATAGAAGAGAAGACGATATGG
AATCATCATTCGATCGCTCTTCAACATGTAGTTCATTCGATTCTGAATCA
ACTGCGTCTACCTCATCTTCGCATTCACAATATTCGATCTGTAAAAGGAA
CGGTCGGAGGGGTGGCGTTCAAATGAAAAGCAACGGTCCTGATTTTACGG
TCAAGAATGGACAATGGACATTATGGGTTGACACTTTACCACGTGCAGAA
CTAAACAATTACAAAGTAGCGTTTTCAATGTTCGATCGCAAACGTAAAGG
AAGGATAGGAGCACGACATCTTGGTGAATTAATGAGAAGCTTAGGTTACA
ATCCACTGGAACAAGAACTTAGTGATCTCATCGACGAATTTACTGACCGA
AATTCCAGTAGGATAACGTTCCCTGAATTCGTTACCATCATGGCACAGAA
ACGACGCTCTTCTGATCAATACATTCGCGACACGTTAGACGTCCTCGATA
AAGAAGGCAAAGGATTAGTACCAATCACTGACCTCCAAAAAAACCTTGCC
ACTATAGGTGATCAATTGAAGCCTGAAGAAATAGCAGAAATTTTCACTGA
TCTCGATATAGATGACGATGGAAATGTTTCTTATGACGaTCTTGTCGAAA
TGATATCAACAGCTCCAGAGGTTTTCGACGAACCTGAAAAACAACGAACG
CAACGCAATCGAAAGATGTCTGAATACACCGTAAAAGGCGCCCTTAAAAG
CTTTTTTGGAACCTGAATGGAAAACTGGTCACACGTTTATAACTCAAGAA
CAACTCGACAATATAGAAGAGAAGACGATATGGAATCATCATTCGATCGC
TCTTCAACATGTAGTTCATTCGATTCTGAATCAACTGCGTCTACCTCATC
TTCGCATTCACAATATTCGATCTGTAAAAGGAACGGTCGGAGGGGTGGCG
TTCAAATGAAAAGCAACGGTCCTGATTTTACGGTCAAGAATGGACAATGG
ACATTATGGGTTGACACTTTACCACGTGCAGAACTAAACAATTACAAAGT
AGCGTTTTCAATGTTCGATCGCAAACGTAAAGGAAGGATAGGAGCACGAC
ATCTTGGTGAATTAATGAGAAGCTTAGGTTACAATCCACTGGAACAAGAA
CTTAGTGATCTCATCGACGAATTTACTGACCGAAATTCCAGTAGGATAAC
GTTCCCTGAATTCGTTACCATCATGGCACAGAAACGACGCTCTTCTGATC
AATACATTCGCGACACGTTAGACGTCCTCGATAAAGAAGGCAAAGGATTA
GTACCAATCACTGACCTCCAAAAAAACCTTGCCACTATAGGTGATCAATT
GAAGCCTGAAGAAATAGCAGAAATTTTCACTGATCTCGATATAGATGACG
ATGGAAATGTTTCTTATGACGaTCTTGTCGAAATGATATCAACAGCTCCA
GAGGTTTTCGACGAACCTGAAAAACAACGAACGCAACGCAATCGAAAGAT
GTCTGAATACACCGTAAAAGGCGCCCTTAAAAGCTTTTTTGGAACCTGAA
TGGAAAACTGGTCACACGTTTATAACTCAAGAACAACTCGACAATATAGA
AGAGAAGACGATATGGAATCATCATTCGATCGCTCTTCAACATGTAGTTC
ATTCGATTCTGAATCAACTGCGTCTACCTCATCTTCGCATTCACAATATT
CGATCTGTAAAAGGAACGGTCGGAGGGGTGGCGTTCAAATGAAAAGCAAC
GGTCCTGATTTTACGGTCAAGAATGGACAATGGACATTATGGGTTGACAC
TTTACCACGTGCAGAACTAAACAATTACAAAGTAGCGTTTTCAATGTTCG
ATCGCAAACGTAAAGGAAGGATAGGAGCACGACATCTTGGTGAATTAATG
AGAAGCTTAGGTTACAATCCACTGGAACAAGAACTTAGTGATCTCATCGA
CGAATTTACTGACCGAAATTCCAGTAGGATAACGTTCCCTGAATTCGTTA
CCATCATGGCACAGAAACGACGCTCTTCTGATCAATACATTCGCGACACG
TTAGACGTCCTCGATAAAGAAGGCAAAGGATTAGTACCAATCACTGACCT
CCAAAAAAACCTTGCCACTATAGGTGATCAATTGAAGCCTGAAGAAATAG
CAGAAATTTTCACTGATCTCGATATAGATGACGATGGAAATGTTTCTTAT
GACGaTCTTGTCGAAATGATATCAACAGCTCCAGAGGTTTTCGACGAACC
TGAAAAACAACGAACGCAACGCAATCGAAAGATGTCTGAATACACCGTAA
AAGGCGCCCTTAAAAGCTTTTTTGGAACCTGAATGGAAAACTGGTCACAC
GTTTATAACTCAAGAACAACTCGACAATATAGAAGAGAAGACGATATGGA
ATCATCATTCGATCGCTCTTCAACATGTAGTTCATTCGATTCTGAATCAA
CTGCGTCTACCTCATCTTCGCATTCACAATATTCGATCTGTAAAAGGAAC
GGTCGGAGGGGTGGCGTTCAAATGAAAAGCAACGGTCCTGATTTTACGGT
CAAGAATGGACAATGGACATTATGGGTTGACACTTTACCACGTGCAGAAC
TAAACAATTACAAAGTAGCGTTTTCAATGTTCGATCGCAAACGTAAAGGA
AGGATAGGAGCACGACATCTTGGTGAATTAATGAGAAGCTTAGGTTACAA
TCCACTGGAACAAGAACTTAGTGATCTCATCGACGAATTTACTGACCGAA
ATTCCAGTAGGATAACGTTCCCTGAATTCGTTACCATCATGGCACAGAAA
CGACGCTCTTCTGATCAATACATTCGCGACACGTTAGACGTCCTCGATAA
AGAAGGCAAAGGATTAGTACCAATCACTGACCTCCAAAAAAACCTTGCCA
CTATAGGTGATCAATTGAAGCCTGAAGAAATAGCAGAAATTTTCACTGAT
CTCGATATAGATGACGATGGAAATGTTTCTTATGACGaTCTTGTCGAAAT
GATATCAACAGCTCCAGAGGTTTTCGACGAACCTGAAAAACAACGAACGC
AACGCAATCGAAAGATGTCTGAATACACCGTAAAAGGCGCCCTTAAAAGC
TTTTTTGGAACCTGAATGGAAAACTGGTCACACGTTTATAACTCAAGAAC
AACTCGACAATATAGAAGAGAAGACGATATGGAATCATCATTCGATCGCT
CTTCAACATGTAGTTCATTCGATTCTGAATCAACTGCGTCTACCTCATCT
TCGCATTCACAATATTCGATCTGTAAAAGGAACGGTCGGAGGGGTGGCGT
TCAAATGAAAAGCAACGGTCCTGATTTTACGGTCAAGAATGGACAATGGA
CATTATGGGTTGACACTTTACCACGTGCAGAACTAAACAATTACAAAGTA
GCGTTTTCAATGTTCGATCGCAAACGTAAAGGAAGGATAGGAGCACGACA
TCTTGGTGAATTAATGAGAAGCTTAGGTTACAATCCACTGGAACAAGAAC
TTAGTGATCTCATCGACGAATTTACTGACCGAAATTCCAGTAGGATAACG
TTCCCTGAATTCGTTACCATCATGGCACAGAAACGACGCTCTTCTGATCA
ATACATTCGCGACACGTTAGACGTCCTCGATAAAGAAGGCAAAGGATTAG
TACCAATCACTGACCTCCAAAAAAACCTTGCCACTATAGGTGATCAATTG
AAGCCTGAAGAAATAGCAGAAATTTTCACTGATCTCGATATAGATGACGA
TGGAAATGTTTCTTATGACGaTCTTGTCGAAATGATATCAACAGCTCCAG
AGGTTTTCGACGAACCTGAAAAACAACGAACGCAACGCAATCGAAAGATG
TCTGAATACACCGTAAAAGGCGCCCTTAAAAGCTTTTTTGGAACCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012373XLOC_012373Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022032-proteinTCONS_00022032-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022032-exon-sc0000403-1491911889:234607..235150TCONS_00022032-exon-sc0000403-1491911889:234607..235150Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1510915933:234607..235150TCONS_00022032-exon-sc0000403-1510915933:234607..235150Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1575043694:234607..235150TCONS_00022032-exon-sc0000403-1575043694:234607..235150Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1491911889:235467..235497TCONS_00022032-exon-sc0000403-1491911889:235467..235497Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1510915933:235467..235497TCONS_00022032-exon-sc0000403-1510915933:235467..235497Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1575043694:235467..235497TCONS_00022032-exon-sc0000403-1575043694:235467..235497Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1491911889:235839..235982TCONS_00022032-exon-sc0000403-1491911889:235839..235982Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1510915933:235839..235982TCONS_00022032-exon-sc0000403-1510915933:235839..235982Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1575043694:235839..235982TCONS_00022032-exon-sc0000403-1575043694:235839..235982Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1491911889:236356..236592TCONS_00022032-exon-sc0000403-1491911889:236356..236592Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1510915933:236356..236592TCONS_00022032-exon-sc0000403-1510915933:236356..236592Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1575043694:236356..236592TCONS_00022032-exon-sc0000403-1575043694:236356..236592Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1491911889:236976..237099TCONS_00022032-exon-sc0000403-1491911889:236976..237099Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1510915933:236976..237099TCONS_00022032-exon-sc0000403-1510915933:236976..237099Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1575043694:236976..237099TCONS_00022032-exon-sc0000403-1575043694:236976..237099Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1491911889:237152..237913TCONS_00022032-exon-sc0000403-1491911889:237152..237913Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1510915933:237152..237913TCONS_00022032-exon-sc0000403-1510915933:237152..237913Clytia hemisphaericaexon
TCONS_00022032-exon-sc0000403-1575043694:237152..237913TCONS_00022032-exon-sc0000403-1575043694:237152..237913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:234607..237913 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43326	2.03384	0.491975	0.192528	1.64069	1.52801	2.6535	2.90256	1.904	2.40376	2.24511	1.05624	5.99631	4.42659	7.08113	7.73152	4.38719	4.93135	8.19861	13.8718	3.61294	3.99583	4.58345	5.14083	3.42888	3.1851	3.42585	1.97115	1.73618	2.30939
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00022032 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.334e-29
Identity = 57/148 (38.51%), Postives = 91/148 (61.49%), Query Frame = 2 
Query:  542 WVDTLPRAELNNYKVAFSMFDRKRKGRIGARHLGELMRSLGYNPLEQELSDLIDEFTDRNSSRITFPEFVTIMAQKRRSSD--QYIRDTLDVLDKEGKGLVPITDLQKNLATIGDQLKPEEIAEIFTDLDIDDDGNVSYDDLVEMIST 979
              D L   ++  +K AFS+FD+   G I  + LG +MRSLG NP E EL D+I+E     +  I FPEF+T+MA+K + +D  + IR+   V DK+G G +   +L+  +  +G++L  EE+ E+  + DID DG V+Y++ V+M++ 
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00022032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.334e-2938.51Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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