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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022016 ID=TCONS_00022016|Name=TCONS_00022016|organism=Clytia hemisphaerica|type=transcript|length=1451bpRun BLAST on NCBI protein sequence of TCONS_00022016-protein >TCONS_00022016-protein ID=TCONS_00022016-protein|Name=TCONS_00022016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp QGDGGNDGDRDEDAGKADVNRMAQYDVESYSDNDEGDVEADIKPFQCGICRun BLAST on NCBI transcript from alignment at sc0000401:94920..96370 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022016 ID=TCONS_00022016|Name=TCONS_00022016|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at sc0000401:94920..96370 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000401:94920..96370 >TCONS_00022016 ID=TCONS_00022016|Name=TCONS_00022016|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000401:94920..96370 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022016 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 296.204 bits (757), Expect = 4.461e-91 Identity = 160/394 (40.61%), Postives = 212/394 (53.81%), Query Frame = -2
Query: 158 VEADIKPFQCGICGKGFQFPNNLIVHSRYHSKSVRKKNIKSEKTEPRRQMNSEKLTSIKGGNDVPKTLQSNLKVKTQNKDRPLALKKEKKVVDLQAFALKCKNQMFIDTFKGQKQHKCNVCGKEYMYLPTLQKHMRSHNGQKLHHCGECGKEFDTTRLFNAHLKTNGCRKPYKCNVCEKKFAKSRVLLFHSAIHLKQKRFKCGVCDVSFAVSNNLHSHLRIHTGEKPFRCTVCEKTFAQAGALQSHARTHTGERPFKCTDCGKEFTQAGSLQTHVRTHTGEKPFNCHVCGKSYAQVGSLQSHLRIHTGEKPFRCTVCEKTFAQAGALQLHLRTHTGEKPFKCHVCGKAFAQAGALQSHLRIHTGEKPFNCELCGKAFTQSGGLKVHLRKHSRTK 1339
V K + C CGKGF +NL H R H+ + T + G ++ + ++P K F+ + G+K +KC VCGK + LQ H R H G+K + CG+CGK F + + H + + KPYKC+ C K F+ S L H +H +K +KC C F+ +++ SH R+HTGEKPFRC VC K F+Q+ Q+H R HTGE+P+KC CGK F + +L H R HTGEKP+ C CGK ++Q +LQ+H +HTGEKPF+C C+K F+QA LQ H R HTGEKP+KC CGKAF+Q LQ H IHTGEKPF CE CGK F+ S GL H R H+ K
Sbjct: 312 VRTGKKRYWCHECGKGFSQSSNLQTHQRVHT-------------------GEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGK-----GFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEK 681 HSP 2 Score: 283.493 bits (724), Expect = 3.066e-86 Identity = 159/387 (41.09%), Postives = 214/387 (55.30%), Query Frame = -2
Query: 167 KPFQCGICGKGFQFPNNLIVHSRYHSKSVRKKNIKSEKTEPRRQMNSEKLTSIKGGNDVPKTLQSNLKVKTQNKDRPLALKKEKKVVDL-QAFALKCKNQMFIDTFKGQKQHKCNVCGKEYMYLPTLQKHMRSHNGQKLHHCGECGKEFDTTRLFNAHLKTNGCRKPYKCNVCEKKFAKSRVLLFHSAIHLKQKRFKCGVCDVSFAVSNNLHSHLRIHTGEKPFRCTVCEKTFAQAGALQSHARTHTGERPFKCTDCGKEFTQAGSLQTHVRTHTGEKPFNCHVCGKSYAQVGSLQSHLRIHTGEKPFRCTVCEKTFAQAGALQLHLRTHTGEKPFKCHVCGKAFAQAGALQSHLRIHTGEKPFNCELCGKAFTQSGGLKVHLRKHS 1324
KP++C CGKGF +L +H R H+ +K K E KG T +S+L Q +R +K K D + F+ +K +KC+ CGK + L H R H G+K + C ECGK F + F +H + + KP++CNVC K F++S H +H +K +KC VC F S NLH+H R+HTGEKP++C C K F+QA LQ+H HTGE+PFKC C K F+QA LQ H R HTGEKP+ C CGK+++Q +LQ H IHTGEKPF+C C K F+ + L H R HTGEKP+ C CGK F+QA +H R+HTGE+P+ C++C K F+Q L H R H+
Sbjct: 373 KPYRCDSCGKGFSRSTDLNIHCRVHTG---EKPYKCE-------------VCGKGF-----TQRSHL----QAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHT 734 HSP 3 Score: 259.996 bits (663), Expect = 1.582e-77 Identity = 128/283 (45.23%), Postives = 172/283 (60.78%), Query Frame = -2
Query: 158 GQKQHKCNVCGKEYMYLPTLQKHMRSHNGQKLHHCGECGKEFDTTRLFNAHLKTNGCRKPYKCNVCEKKFAKSRVLLFHSAIHLKQKRFKCGVCDVSFAVSNNLHSHLRIHTGEKPFRCTVCEKTFAQAGALQSHARTHTGERPFKCTDCGKEFTQAGSLQTHVRTHTGEKPFNCHVCGKSYAQVGSLQSHLRIHTGEKPFRCTVCEKTFAQAGALQLHLRTHTGEKPFKCHVCGKAFAQAGALQSHLRIHTGEKPFNCELCGKAFTQSGGLKVHLRKHSRTK 1006
G+K C+ K+ Y + G+K + C ECGK F + H + + KPY C+ C K F +S L H IH +K ++C C F+ S +L+ H R+HTGEKP++C VC K F Q LQ+H R HTGE+P+KC DCGK F+ + +L TH R HT EKP+ C CGK ++ +L SH R+HTGEKP++C C K F+ A + Q H R HTGEKPF+C+VCGK F+Q+ Q+H R+HTGEKP+ CE+CGK F S L H R H+ K
Sbjct: 287 GKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEK 569 HSP 4 Score: 256.529 bits (654), Expect = 2.744e-76 Identity = 144/364 (39.56%), Postives = 196/364 (53.85%), Query Frame = -2
Query: 248 VEADIKPFQCGICGKGFQFPNNLIVHSRYHSKSVRKKNIKSEKTEPRRQMNSEKLTSIKGGNDVPKTLQSNLKVKTQNKDRPLALKKEKKVVDLQAFALKCKNQMFIDTFKGQKQHKCNVCGKEYMYLPTLQKHMRSHNGQKLHHCGECGKEFDTTRLFNAHLKTNGCRKPYKCNVCEKKFAKSRVLLFHSAIHLKQKRFKCGVCDVSFAVSNNLHSHLRIHTGEKPFRCTVCEKTFAQAGALQSHARTHTGERPFKCTDCGKEFTQAGSLQTHVRTHTGEKPFNCHVCGKSYAQVGSLQSHLRIHTGEKPFRCTVCEKTFAQAGALQLHLRTHTGEKPFKCHVCGKAFAQAGALQSHLRIHTG 1339
V KP++C +CGKGF ++L H R H+ +P + + K S L ++ +V T+ K P + K L +F L ++ G+K +KC CGK + + Q H R H G+K C CGK F + F AH + + KPYKC VC K+F S L H +H +K +KC C F+ ++NL +H +HTGEKPF+C C+K F+QA LQ+H R HTGE+P+KC CGK F+Q +LQ H HTGEKPF C CGK ++ L +H R+HTGEKP+ C C K F+QA H R HTGE+P+ C VC K F+Q L H R+HTG
Sbjct: 396 VHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGE-----------KPYKCGDCGKRFSCSS------NLHTHQRVHTEEK--PYKCDECGKCFSL-SFNLHSHQRVHT----GEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 HSP 5 Score: 228.409 bits (581), Expect = 5.458e-66 Identity = 118/285 (41.40%), Postives = 168/285 (58.95%), Query Frame = -2
Query: 158 KGQKQHKCNVCGKEYMYL-PTLQKHMRSHNGQKLHHCGECGKEFDTTRLFNAHLKTNGCRKPYKCNVCEKKFAKSRVLLFHSAIHLKQKRFKCGVCDVSFAVSNNLHSHLRIHTGEKPFRCTVCEKTFAQAGALQSHARTHTGERPFKCTDCGKEFTQAGSLQTHVRTHTGEKPFNCHVCGKSYAQVGSLQSHLRIHTGEKPFRCTVCEKTFAQAGALQLHLRTHTGEKPFKCHVCGKAFAQAGALQSHLRIHTGEKPFNCELCGKAFTQSGGLKVHLRKHSRTK 1009
K K H + CGK+ + + P Q+ + H GQK + EC + F+ + H + + +K C+ EK + S + ++ +KR+ C C F+ S+NL +H R+HTGEKP+ C C K+F Q+ L +H HTGE+P++C CGK F+++ L H R HTGEKP+ C VCGK + Q LQ+H RIHTGEKP++C C K F+ + L H R HT EKP+KC CGK F+ + L SH R+HTGEKP+ CE CGK F+ + + H R H+ K
Sbjct: 231 KRDKVHSNSDCGKDTLKVSPLTQRSI--HTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEK 513 The following BLAST results are available for this feature:
BLAST of TCONS_00022016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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