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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022012 ID=TCONS_00022012|Name=TCONS_00022012|organism=Clytia hemisphaerica|type=transcript|length=868bp
aatgattgCAAATTATCGTAATAGAACTAAATCCAGTAAGGAGCAAATTC
AGCAGATTCGGTTGAATTCAATCAAACAAGTCTGTCCAAATTTATCTTTT
AATAATTCTTTAgcaaacaataacaaaattctCGTACAAAACTTAGACCT
CAAAAGGTatctttaaaatattatttacaGCAAAACAAATTCCTAATAAC
TTTCATGATAGTTACCAATATTTACGGATATGTAGTTGAAATTCTACAGA
ATCTGTGAAAGTCTTCCCACAAACATCACATTTATATGGGTTAAGATCTT
CTTGAGAAAAAGCCTCATTTTTCTGACAATTTCcacaaatatcaaattta
agtGGCTGTTTTTTACTGTAAAGAGATTGTTGACATTTCACTGTAAATAC
TTTTCCACAAACATTGCATTCCTTTTGATGACATTTTTCTTCACAGAATA
AATTCTGTTTGGATTTGGTGACACAACTAGATTGAGGTTGAGCAGCTTCG
CAAATCTGAGCTTGGGCTTTCAAATTCCTCGAACAATGAAACAGTTTTTC
CCCAGTATTggtaaaaaaaccttttaattCAATGTATCTTAAAACACGAT
TTCTGttcacattttttgcaaagcaaattttcaaacattgtgATGTAATA
CCTTCACCACATTCAATGCACTTAAGTCGTGTTACTAAAACTTTTGGTTG
GTTTAAAGGATTCATAGAAACAGCTGCCATTTGAGACCTGTTTTGTTTCT
TGGctctaaaaaaaaagaaaataaatatgtaAGAGTTGCATTAAGctaat
aatgaaaataaactttttcttgATAAATCAGTCAAAACCTTTGCAAATTA
Atgtaaaattattaaaaa Run BLAST on NCBI protein sequence of TCONS_00022012-protein >TCONS_00022012-protein ID=TCONS_00022012-protein|Name=TCONS_00022012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MAAVSMNPLNQPKVLVTRLKCIECGEGITSQCLKICFAKNVNRNRVLRYI
ELKGFFTNTGEKLFHCSRNLKAQAQICEAAQPQSSCVTKSKQNLFCEEKC
HQKECNVCGKVFTVKCQQSLYSKKQPLKFDICGNCQKNEAFSQEDLNPYK
CDVCGKTFTDSVEFQLHIRKYW Run BLAST on NCBI transcript from alignment at sc0000401:71945..72812 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022012 ID=TCONS_00022012|Name=TCONS_00022012|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at sc0000401:71945..72812 (Clytia hemisphaerica)
tttttaataattttacaTTAATTTGCAAAGGTTTTGACTGATTTATcaag
aaaaagtttattttcattattagCTTAATGCAACTCTtacatatttattt
tctttttttttagagCCAAGAAACAAAACAGGTCTCAAATGGCAGCTGTT
TCTATGAATCCTTTAAACCAACCAAAAGTTTTAGTAACACGACTTAAGTG
CATTGAATGTGGTGAAGGTATTACATcacaatgtttgaaaatttgctttg
caaaaaatgtgaaCAGAAATCGTGTTTTAAGATACATTGaattaaaaggt
ttttttaccAATACTGGGGAAAAACTGTTTCATTGTTCGAGGAATTTGAA
AGCCCAAGCTCAGATTTGCGAAGCTGCTCAACCTCAATCTAGTTGTGTCA
CCAAATCCAAACAGAATTTATTCTGTGAAGAAAAATGTCATCAAAAGGAA
TGCAATGTTTGTGGAAAAGTATTTACAGTGAAATGTCAACAATCTCTTTA
CAGTAAAAAACAGCCacttaaatttgatatttgtgGAAATTGTCAGAAAA
ATGAGGCTTTTTCTCAAGAAGATCTTAACCCATATAAATGTGATGTTTGT
GGGAAGACTTTCACAGATTCTGTAGAATTTCAACTACATATCCGTAAATA
TTGGTAACTATCATGAAAGTTATTAGGAATTTGTTTTGCtgtaaataata
ttttaaagatACCTTTTGAGGTCTAAGTTTTGTACGagaattttgttatt
gtttgcTAAAGAATTATTAAAAGATAAATTTGGACAGACTTGTTTGATTG
AATTCAACCGAATCTGCTGAATTTGCTCCTTACTGGATTTAGTTCTATTA
CGATAATTTGcaatcatt Coding sequence (CDS) from alignment at sc0000401:71945..72812 >TCONS_00022012 ID=TCONS_00022012|Name=TCONS_00022012|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000401:71945..72812 (Clytia hemisphaerica)
ATGGCAGCTGTTTCTATGAATCCTTTAAACCAACCAAAAGTTTTAGTAAC
ACGACTTAAGTGCATTGAATGTGGTGAAGGTATTACATcacaatgtttga
aaatttgctttgcaaaaaatgtgaaCAGAAATCGTGTTTTAAGATACATT
GaattaaaaggtttttttaccAATACTGGGGAAAAACTGTTTCATTGTTC
GAGGAATTTGAAAGCCCAAGCTCAGATTTGCGAAGCTGCTCAACCTCAAT
CTAGTTGTGTCACCAAATCCAAACAGAATTTATTCTGTGAAGAAAAATGT
CATCAAAAGGAATGCAATGTTTGTGGAAAAGTATTTACAGTGAAATGTCA
ACAATCTCTTTACAGTAAAAAACAGCCacttaaatttgatatttgtgGAA
ATTGTCAGAAAAATGAGGCTTTTTCTCAAGAAGATCTTAACCCATATAAA
TGTGATGTTTGTGGGAAGACTTTCACAGATTCTGTAGAATTTCAACTACA
TATCCGTAAATATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022012-exon-sc0000401-1491911889:71945..72812 | TCONS_00022012-exon-sc0000401-1491911889:71945..72812 | Clytia hemisphaerica | exon |
| TCONS_00022012-exon-sc0000401-1510915933:71945..72812 | TCONS_00022012-exon-sc0000401-1510915933:71945..72812 | Clytia hemisphaerica | exon |
| TCONS_00022012-exon-sc0000401-1575043694:71945..72812 | TCONS_00022012-exon-sc0000401-1575043694:71945..72812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:71945..72812 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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