TCONS_00021979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021979
Unique NameTCONS_00021979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021979 ID=TCONS_00021979|Name=TCONS_00021979|organism=Clytia hemisphaerica|type=transcript|length=1843bp
ATTCAAGACTTTTTTTGGTGCATCCAGCAATATTAAAGCTTAATAGTTGA
TAAAActgataaaaaaaatctaacaaaattCTAACAAAAGTAAAACATAC
AATGGTGTTGGAATGGATAAACCAAACCTTTAGTGAACAAGAATAACATA
CATATCGATATATAGACTTGAGTGAATAGTAAAATAAACAGAACATGATA
AAGTTAAGAGATAAAACAATCCTTCAAGAGTGAATACGCATGTGATAATT
TAAATTacttaaaactctaaaacttTTTGCACAAACATCACATGAAAACG
GTCTTTCTCCAGTATGAATACGAAGATGTATTTTTAATGTCCCAGCTTGA
CTGAAAGCCTTCTCACAAACCTTGCATTTGAATGGCTTTTCGCCGGTGTG
GGTACGCTGATGTCTCTTTAAATCATGCGATCTTGTAAAAGTTTTCTCAC
AAACATTACATTTGTAAGGTTTTTTATGCCTGTTAACACGTACAGGTTTT
TCTCCAGTATGAAAACGAAAATGCGTTTTCAAATGgcttgattggttgaa
agccTTCTGACATACATTGCATTTGAATGGCCTTTTACCAGTGTGGGTAT
GTTCATGAACTTTTAAATGATGTAACCGCTTGAAAGCTTTCTCACACTCA
TTACATACAAAAGGTTTTTCACCTGTGTGGATACGTTGGTGTCTCTTTAA
ATCGTGTGCTCTTTTGAATACCTTTTCACAAACATTGCATTTATGGGATT
TTTTGCATGTGTCTTCAGTATGAATACGTAGATGTGTCTTCAATTGACTT
GAACGCTTTGAGGCCTTCTCACAAGCCTTTTTACAAAGGTCATTACGGAG
ATGTCTTGATAAGCTGTAAGCAAATTTGAATACTTTACCGCATAGGTTAC
ATTGGAAGCGACTTTCCTCAAGATGGACTGTTGAGTGTAATAACAAAGAT
GAGCCAATTGGAAATCTTTTTCCACAAACATTACATTCATATGGATTTTT
GCATTTATTAGATTTCAAATGGGTTTTAAAGAGATGACTGTTGTTAAACT
CTTTCTGACAATCCGCACAttgcaaaaatttcttacatCCATTATCATGT
attgttttgtgtttttgaagagaaattaaattcaaatgtGACTCATCACA
AATATCACATTTCAACATTCTTTGGCTAGATTTTGAACCTTGGGAAACGG
TAGGATTGAACTTTGTTTGGTTGGACTTGGAGGTAACTGCTGAGTTGACA
GTTGTTTCCTTCCATTTATCTTGATTAGGGCTTTTGATACCCTTGGGATT
TTTCCAAGGTGTATGAAAACGACTGTGTGCTCCTAAGTTGTTCAAAAACT
GGAACCGTTTTCCACAAAAACCACACTGGAAAGGTTTCTCATTAGCTCCA
CTTTCTTCTTCAGAAACCAAATTACTATTTTCATTGACATCTTCATAAAC
AGAATCTTCTTCAGGGCTAATACTTGTTTGATTCATCTTATTAACACCAC
TCACTGGAGAATTACTAAGCTCCATCAAGGGATTGATGACGTAACTATCA
CTTTCAGAAGCTTTCTCTTGTTGATCAATTTGTTGAGCAGACGAGCGAGA
TTTCTCATTAGTATTAAAATCATCTTTCTCCAGAAGATTATCGGCAACAG
GACTATGAACTTCATGTACTTGTTGATGTTTTTGGAAATTCCacattctt
ttgaatttttttccacaAACTGTACATTCTTTCGTTGTTTTGGAAGGATT
ATTTTTGGATTGGGGAACTGCTTGTTGTTTATGTTCCTTATTACAGGTTT
GCATCgttgataaattttattgtGTTTTATTTGTAATCTCTAT
Run BLAST on NCBI

transcript from alignment at sc0000401:72969..74811-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021979 ID=TCONS_00021979|Name=TCONS_00021979|organism=Clytia hemisphaerica|type=transcript|length=1843bp|location=Sequence derived from alignment at sc0000401:72969..74811- (Clytia hemisphaerica)
ATTCAAGACTTTTTTTGGTGCATCCAGCAATATTAAAGCTTAATAGTTGA TAAAACTGATAAAAAAAATCTAACAAAATTCTAACAAAAGTAAAACATAC AATGGTGTTGGAATGGATAAACCAAACCTTTAGTGAACAAGAATAACATA CATATCGATATATAGACTTGAGTGAATAGTAAAATAAACAGAACATGATA AAGTTAAGAGATAAAACAATCCTTCAAGAGTGAATACGCATGTGATAATT TAAATTACTTAAAACTCTAAAACTTTTTGCACAAACATCACATGAAAACG GTCTTTCTCCAGTATGAATACGAAGATGTATTTTTAATGTCCCAGCTTGA CTGAAAGCCTTCTCACAAACCTTGCATTTGAATGGCTTTTCGCCGGTGTG GGTACGCTGATGTCTCTTTAAATCATGCGATCTTGTAAAAGTTTTCTCAC AAACATTACATTTGTAAGGTTTTTTATGCCTGTTAACACGTACAGGTTTT TCTCCAGTATGAAAACGAAAATGCGTTTTCAAATGGCTTGATTGGTTGAA AGCCTTCTGACATACATTGCATTTGAATGGCCTTTTACCAGTGTGGGTAT GTTCATGAACTTTTAAATGATGTAACCGCTTGAAAGCTTTCTCACACTCA TTACATACAAAAGGTTTTTCACCTGTGTGGATACGTTGGTGTCTCTTTAA ATCGTGTGCTCTTTTGAATACCTTTTCACAAACATTGCATTTATGGGATT TTTTGCATGTGTCTTCAGTATGAATACGTAGATGTGTCTTCAATTGACTT GAACGCTTTGAGGCCTTCTCACAAGCCTTTTTACAAAGGTCATTACGGAG ATGTCTTGATAAGCTGTAAGCAAATTTGAATACTTTACCGCATAGGTTAC ATTGGAAGCGACTTTCCTCAAGATGGACTGTTGAGTGTAATAACAAAGAT GAGCCAATTGGAAATCTTTTTCCACAAACATTACATTCATATGGATTTTT GCATTTATTAGATTTCAAATGGGTTTTAAAGAGATGACTGTTGTTAAACT CTTTCTGACAATCCGCACATTGCAAAAATTTCTTACATCCATTATCATGT ATTGTTTTGTGTTTTTGAAGAGAAATTAAATTCAAATGTGACTCATCACA AATATCACATTTCAACATTCTTTGGCTAGATTTTGAACCTTGGGAAACGG TAGGATTGAACTTTGTTTGGTTGGACTTGGAGGTAACTGCTGAGTTGACA GTTGTTTCCTTCCATTTATCTTGATTAGGGCTTTTGATACCCTTGGGATT TTTCCAAGGTGTATGAAAACGACTGTGTGCTCCTAAGTTGTTCAAAAACT GGAACCGTTTTCCACAAAAACCACACTGGAAAGGTTTCTCATTAGCTCCA CTTTCTTCTTCAGAAACCAAATTACTATTTTCATTGACATCTTCATAAAC AGAATCTTCTTCAGGGCTAATACTTGTTTGATTCATCTTATTAACACCAC TCACTGGAGAATTACTAAGCTCCATCAAGGGATTGATGACGTAACTATCA CTTTCAGAAGCTTTCTCTTGTTGATCAATTTGTTGAGCAGACGAGCGAGA TTTCTCATTAGTATTAAAATCATCTTTCTCCAGAAGATTATCGGCAACAG GACTATGAACTTCATGTACTTGTTGATGTTTTTGGAAATTCCACATTCTT TTGAATTTTTTTCCACAAACTGTACATTCTTTCGTTGTTTTGGAAGGATT ATTTTTGGATTGGGGAACTGCTTGTTGTTTATGTTCCTTATTACAGGTTT GCATCGTTGATAAATTTTATTGTGTTTTATTTGTAATCTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012337XLOC_012337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021979-exon-sc0000401-1575043694:72969..74811TCONS_00021979-exon-sc0000401-1575043694:72969..74811Clytia hemisphaericaexon
TCONS_00021979-exon-sc0000401-1510915933:72969..74811TCONS_00021979-exon-sc0000401-1510915933:72969..74811Clytia hemisphaericaexon
TCONS_00021979-exon-sc0000401-1491911889:72969..74811TCONS_00021979-exon-sc0000401-1491911889:72969..74811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:72969..74811 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.09008 2.5085 2.42717 1.99382 0.867258 1.02798 0.964609 1.95999 1.30966 0.727205 0.814434 0.999371 0.981927 0.794798 2.02194 1.20832 2.31449 1.52572 0.392369 0.313978 1.08813 1.36479 3.62539 4.97194 0.139869 0.540927 0.367425 0.3137 2.20086 2.24233
Blast
BLAST of TCONS_00021979 vs. Swiss-Prot (Human)
Match: ZN470 (Zinc finger protein 470 OS=Homo sapiens GN=ZNF470 PE=2 SV=3)

HSP 1 Score: 261.151 bits (666), Expect = 1.237e-76
Identity = 157/414 (37.92%), Postives = 221/414 (53.38%), Query Frame = -1
Query:  227 ANEKPFQCGFCGKRFQFLNNLGAHSRFHTPWKNPKGIKSPNQDKWKETTVNSAVTSKSNQTKFNPTVSQGSKSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPV-------------------RVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1396
              EKP+QC  C K F  L +L  H R HT  K  + I+             S  +S ++  + +        + +R  +C  C ++     SL +H+  +  G K F  C DC K F +      H +++  + PY+CNVCGK F  GSSL +H  +H  E  ++CN+C K F    SL+ H R    +K      C KA ++S+ L  H RIHT +   K ++C  C K F +   L +HQ+IHTGEKP+ C EC KAF ++ HL  H+  HTG++P++C  C KAF+  S+L  H R H+G++P                    R +  +KPY+CNVC K F+    L  HQR HTGEKP++CK C KAFSQ   L +H RIHTGERP+ C  C K+FR   +L +H RIH+
Sbjct:  307 TGEKPYQCKQCNKAFSQLAHLAQHQRVHTGEKPYECIECGK--------AFSDCSSLAHHRRIH--------TGKRPYECIDCGKAFRQNASLIRHRRYYHTGEKPF-DCIDCGKAFTDHIGLIQHKRTHTGERPYKCNVCGKAFSHGSSLTVHQRIHTGEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTGE---KPYECKECSKTFSQNAHLAQHQKIHTGEKPYECKECGKAFSQIAHLVQHQRVHTGEKPYECIECGKAFSDGSYLVQHQRLHSGKRPYECLECGKAFRQRASLICHQRCHTGEKPYECNVCGKAFSHRKSLTLHQRIHTGEKPYECKECSKAFSQVAHLTLHKRIHTGERPYECKECGKAFRQSVHLAHHQRIHT 700          

HSP 2 Score: 226.868 bits (577), Expect = 3.038e-64
Identity = 148/391 (37.85%), Postives = 195/391 (49.87%), Query Frame = -1
Query:  227 ANEKPFQCGFCGKRFQFLNNLGAHSRFHTPWKNPKGIKSPNQDKWKETTVNSAVTSKSNQTKFNPTVSQGSKSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHS-TVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKACEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPVRVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1396
              EKP++C  CGK F    +L  H R HT             +K  E T      S++     +  V  G K  Q    C  C+++   L  L +H+ +H    +K  +C +C K F++      H + +  K PYEC  CGK F   +SL+ H    H  E  F C  CGK F     L +H R                   TH       T ++ +KCNVC K F     L  HQRIHTGEKP+ CN CEKAF     L +H+  HTG++P++C  C KAF QS+HL  H R HTGE         KPY+C  C KTF+++  L +HQ+ HTGEKP++CK C KAFSQ   L  H R+HTGE+P+ C  C K+F   S L  H R+HS
Sbjct:  251 TGEKPYECIECGKAFSQSAHLAQHQRIHTG------------EKPFECTECGKAFSQNAHLVQHQRVHTGEKPYQ----CKQCNKAFSQLAHLAQHQRVHTG--EKPYECIECGKAFSDCSSLAHHRRIHTGKRPYECIDCGKAFRQNASLIRHRRYYHTGEKPFDCIDCGKAFTDHIGLIQHKR-------------------TH-------TGERPYKCNVCGKAFSHGSSLTVHQRIHTGEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTGE---------KPYECKECSKTFSQNAHLAQHQKIHTGEKPYECKECGKAFSQIAHLVQHQRVHTGEKPYECIECGKAFSDGSYLVQHQRLHS 588          

HSP 3 Score: 225.713 bits (574), Expect = 7.385e-64
Identity = 134/325 (41.23%), Postives = 183/325 (56.31%), Query Frame = -1
Query:  227 KSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQR-IHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPVRVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1183
            +  +++LKC+ C++    + +L  H+ IH    +K  +C +C K F+ S     H + +  + P+EC  CGK F   + L+ H  VH  E  +QC  C K F     L++H R    +K      C KA    S L  H RIHT    K+ ++C  C K F++   L RH+R  HTGEKPF C +C KAF     L  H+ THTG+RP+KCNVC KAF+  S L  H R HTGE         KPY+CN+CEK F+    L  HQR HTGEKP++CK C KAF Q+  L  H RIHTGE+P+ C  C+K+F   ++L  H +IH+
Sbjct:  222 RGEKKLLKCNDCEKIFSKISTLTLHQRIHTG--EKPYECIECGKAFSQSAHLAQHQRIHTGEKPFECTECGKAFSQNAHLVQHQRVHTGEKPYQCKQCNKAFSQLAHLAQHQRVHTGEKPYECIECGKAFSDCSSLAHHRRIHTG---KRPYECIDCGKAFRQNASLIRHRRYYHTGEKPFDCIDCGKAFTDHIGLIQHKRTHTGERPYKCNVCGKAFSHGSSLTVHQRIHTGE---------KPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTGEKPYECKECSKTFSQNAHLAQHQKIHT 532          

HSP 4 Score: 212.231 bits (539), Expect = 4.558e-59
Identity = 122/302 (40.40%), Postives = 167/302 (55.30%), Query Frame = -1
Query:  227 QKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFR-FHTGEKPV-------------------RVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1057
            +K      + K H +    K   +CN C K F   S+L LH  +H  E  ++C  CGK F  +  L++H R    +K      C KA  +++ L  H R+HT +   K ++C  C K F +   L +HQR+HTGEKP+ C EC KAF     L  H   HTGKRP++C  C KAF Q++ L  H R +HTGEKP                    R +  ++PYKCNVC K F+    L  HQR HTGEKP++C +CEKAFS  G+L +H R+HTGE+P+ C  C K+FR  ++L +H RIH+
Sbjct:  206 KKSLKTHSVVKKHKQDRGEKKLLKCNDCEKIFSKISTLTLHQRIHTGEKPYECIECGKAFSQSAHLAQHQRIHTGEKPFECTECGKAFSQNAHLVQHQRVHTGE---KPYQCKQCNKAFSQLAHLAQHQRVHTGEKPYECIECGKAFSDCSSLAHHRRIHTGKRPYECIDCGKAFRQNASLIRHRRYYHTGEKPFDCIDCGKAFTDHIGLIQHKRTHTGERPYKCNVCGKAFSHGSSLTVHQRIHTGEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHT 504          

HSP 5 Score: 169.474 bits (428), Expect = 1.052e-44
Identity = 107/310 (34.52%), Postives = 153/310 (49.35%), Query Frame = -1
Query:  482 ANEKPFQCGFCGKRFQFLNNLGAHSRFHTPWKNPKGIKSPNQDKWKETTVNSAVTSKSNQTKFNPTVSQGSKSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPVRVN 1396
              E+P++C  CGK F   ++L  H R HT                 E      +  K+   + + T+ Q   + ++  +C  C ++      L  H+ IH    +K  +C +C K F+ +     H K +  + PYEC  CGK F   + L+ H  VH  E  ++C  CGK F     L +H R    K+      C KA ++ + L  H R HT +   K ++CNVC K F     L  HQRIHTGEKP+ C EC KAF ++ HL +H+  HTG+RP++C  C KAF QS HL  H R HTGE  V ++
Sbjct:  420 TGERPYKCNVCGKAFSHGSSLTVHQRIHT----------------GEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTG--EKPYECKECSKTFSQNAHLAQHQKIHTGEKPYECKECGKAFSQIAHLVQHQRVHTGEKPYECIECGKAFSDGSYLVQHQRLHSGKRPYECLECGKAFRQRASLICHQRCHTGE---KPYECNVCGKAFSHRKSLTLHQRIHTGEKPYECKECSKAFSQVAHLTLHKRIHTGERPYECKECGKAFRQSVHLAHHQRIHTGESSVILS 708          

HSP 6 Score: 93.2041 bits (230), Expect = 9.982e-20
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  227 FRFHTGEKPVR----VNRHK------KPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 520
            F FHT +K ++    V +HK      K  KCN CEK F++   L  HQR HTGEKP++C  C KAFSQ+  L  H RIHTGE+PF C  C K+F   ++L  H R+H+
Sbjct:  200 FNFHTDKKSLKTHSVVKKHKQDRGEKKLLKCNDCEKIFSKISTLTLHQRIHTGEKPYECIECGKAFSQSAHLAQHQRIHTGEKPFECTECGKAFSQNAHLVQHQRVHT 307          
The following BLAST results are available for this feature:
BLAST of TCONS_00021979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN4701.237e-7637.92Zinc finger protein 470 OS=Homo sapiens GN=ZNF470 ... [more]
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