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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021979 ID=TCONS_00021979|Name=TCONS_00021979|organism=Clytia hemisphaerica|type=transcript|length=1843bpRun BLAST on NCBI transcript from alignment at sc0000401:72969..74811- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021979 ID=TCONS_00021979|Name=TCONS_00021979|organism=Clytia hemisphaerica|type=transcript|length=1843bp|location=Sequence derived from alignment at sc0000401:72969..74811- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021979 vs. Swiss-Prot (Human)
Match: ZN470 (Zinc finger protein 470 OS=Homo sapiens GN=ZNF470 PE=2 SV=3) HSP 1 Score: 261.151 bits (666), Expect = 1.237e-76 Identity = 157/414 (37.92%), Postives = 221/414 (53.38%), Query Frame = -1
Query: 227 ANEKPFQCGFCGKRFQFLNNLGAHSRFHTPWKNPKGIKSPNQDKWKETTVNSAVTSKSNQTKFNPTVSQGSKSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPV-------------------RVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1396
EKP+QC C K F L +L H R HT K + I+ S +S ++ + + + +R +C C ++ SL +H+ + G K F C DC K F + H +++ + PY+CNVCGK F GSSL +H +H E ++CN+C K F SL+ H R +K C KA ++S+ L H RIHT + K ++C C K F + L +HQ+IHTGEKP+ C EC KAF ++ HL H+ HTG++P++C C KAF+ S+L H R H+G++P R + +KPY+CNVC K F+ L HQR HTGEKP++CK C KAFSQ L +H RIHTGERP+ C C K+FR +L +H RIH+
Sbjct: 307 TGEKPYQCKQCNKAFSQLAHLAQHQRVHTGEKPYECIECGK--------AFSDCSSLAHHRRIH--------TGKRPYECIDCGKAFRQNASLIRHRRYYHTGEKPF-DCIDCGKAFTDHIGLIQHKRTHTGERPYKCNVCGKAFSHGSSLTVHQRIHTGEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTGE---KPYECKECSKTFSQNAHLAQHQKIHTGEKPYECKECGKAFSQIAHLVQHQRVHTGEKPYECIECGKAFSDGSYLVQHQRLHSGKRPYECLECGKAFRQRASLICHQRCHTGEKPYECNVCGKAFSHRKSLTLHQRIHTGEKPYECKECSKAFSQVAHLTLHKRIHTGERPYECKECGKAFRQSVHLAHHQRIHT 700 HSP 2 Score: 226.868 bits (577), Expect = 3.038e-64 Identity = 148/391 (37.85%), Postives = 195/391 (49.87%), Query Frame = -1
Query: 227 ANEKPFQCGFCGKRFQFLNNLGAHSRFHTPWKNPKGIKSPNQDKWKETTVNSAVTSKSNQTKFNPTVSQGSKSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHS-TVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKACEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPVRVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1396
EKP++C CGK F +L H R HT +K E T S++ + V G K Q C C+++ L L +H+ +H +K +C +C K F++ H + + K PYEC CGK F +SL+ H H E F C CGK F L +H R TH T ++ +KCNVC K F L HQRIHTGEKP+ CN CEKAF L +H+ HTG++P++C C KAF QS+HL H R HTGE KPY+C C KTF+++ L +HQ+ HTGEKP++CK C KAFSQ L H R+HTGE+P+ C C K+F S L H R+HS
Sbjct: 251 TGEKPYECIECGKAFSQSAHLAQHQRIHTG------------EKPFECTECGKAFSQNAHLVQHQRVHTGEKPYQ----CKQCNKAFSQLAHLAQHQRVHTG--EKPYECIECGKAFSDCSSLAHHRRIHTGKRPYECIDCGKAFRQNASLIRHRRYYHTGEKPFDCIDCGKAFTDHIGLIQHKR-------------------TH-------TGERPYKCNVCGKAFSHGSSLTVHQRIHTGEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTGE---------KPYECKECSKTFSQNAHLAQHQKIHTGEKPYECKECGKAFSQIAHLVQHQRVHTGEKPYECIECGKAFSDGSYLVQHQRLHS 588 HSP 3 Score: 225.713 bits (574), Expect = 7.385e-64 Identity = 134/325 (41.23%), Postives = 183/325 (56.31%), Query Frame = -1
Query: 227 KSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQR-IHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPVRVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1183
+ +++LKC+ C++ + +L H+ IH +K +C +C K F+ S H + + + P+EC CGK F + L+ H VH E +QC C K F L++H R +K C KA S L H RIHT K+ ++C C K F++ L RH+R HTGEKPF C +C KAF L H+ THTG+RP+KCNVC KAF+ S L H R HTGE KPY+CN+CEK F+ L HQR HTGEKP++CK C KAF Q+ L H RIHTGE+P+ C C+K+F ++L H +IH+
Sbjct: 222 RGEKKLLKCNDCEKIFSKISTLTLHQRIHTG--EKPYECIECGKAFSQSAHLAQHQRIHTGEKPFECTECGKAFSQNAHLVQHQRVHTGEKPYQCKQCNKAFSQLAHLAQHQRVHTGEKPYECIECGKAFSDCSSLAHHRRIHTG---KRPYECIDCGKAFRQNASLIRHRRYYHTGEKPFDCIDCGKAFTDHIGLIQHKRTHTGERPYKCNVCGKAFSHGSSLTVHQRIHTGE---------KPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTGEKPYECKECSKTFSQNAHLAQHQKIHT 532 HSP 4 Score: 212.231 bits (539), Expect = 4.558e-59 Identity = 122/302 (40.40%), Postives = 167/302 (55.30%), Query Frame = -1
Query: 227 QKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFR-FHTGEKPV-------------------RVNRHKKPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 1057
+K + K H + K +CN C K F S+L LH +H E ++C CGK F + L++H R +K C KA +++ L H R+HT + K ++C C K F + L +HQR+HTGEKP+ C EC KAF L H HTGKRP++C C KAF Q++ L H R +HTGEKP R + ++PYKCNVC K F+ L HQR HTGEKP++C +CEKAFS G+L +H R+HTGE+P+ C C K+FR ++L +H RIH+
Sbjct: 206 KKSLKTHSVVKKHKQDRGEKKLLKCNDCEKIFSKISTLTLHQRIHTGEKPYECIECGKAFSQSAHLAQHQRIHTGEKPFECTECGKAFSQNAHLVQHQRVHTGE---KPYQCKQCNKAFSQLAHLAQHQRVHTGEKPYECIECGKAFSDCSSLAHHRRIHTGKRPYECIDCGKAFRQNASLIRHRRYYHTGEKPFDCIDCGKAFTDHIGLIQHKRTHTGERPYKCNVCGKAFSHGSSLTVHQRIHTGEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHT 504 HSP 5 Score: 169.474 bits (428), Expect = 1.052e-44 Identity = 107/310 (34.52%), Postives = 153/310 (49.35%), Query Frame = -1
Query: 482 ANEKPFQCGFCGKRFQFLNNLGAHSRFHTPWKNPKGIKSPNQDKWKETTVNSAVTSKSNQTKFNPTVSQGSKSSQRMLKCDICDESHLNLISLQKHKTIHDNGCKKFLQCADCQKEFNNSHLFKTHLKSNKCKNPYECNVCGKRFPIGSSLLLHSTVHLEESRFQCNLCGKVFKFAYSLSRHLRNDLCKKA-----CEKASKRSSQLKTHLRIHTEDTCKKSHKCNVCEKVFKRAHDLKRHQRIHTGEKPFVCNECEKAFKRLHHLKVHEHTHTGKRPFKCNVCQKAFNQSSHLKTHFRFHTGEKPVRVN 1396
E+P++C CGK F ++L H R HT E + K+ + + T+ Q + ++ +C C ++ L H+ IH +K +C +C K F+ + H K + + PYEC CGK F + L+ H VH E ++C CGK F L +H R K+ C KA ++ + L H R HT + K ++CNVC K F L HQRIHTGEKP+ C EC KAF ++ HL +H+ HTG+RP++C C KAF QS HL H R HTGE V ++
Sbjct: 420 TGERPYKCNVCGKAFSHGSSLTVHQRIHT----------------GEKPYECNICEKAFSHRGSLTLHQRVHTGEKPYECKECGKAFRQSTHLAHHQRIHTG--EKPYECKECSKTFSQNAHLAQHQKIHTGEKPYECKECGKAFSQIAHLVQHQRVHTGEKPYECIECGKAFSDGSYLVQHQRLHSGKRPYECLECGKAFRQRASLICHQRCHTGE---KPYECNVCGKAFSHRKSLTLHQRIHTGEKPYECKECSKAFSQVAHLTLHKRIHTGERPYECKECGKAFRQSVHLAHHQRIHTGESSVILS 708 HSP 6 Score: 93.2041 bits (230), Expect = 9.982e-20 Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = -1
Query: 227 FRFHTGEKPVR----VNRHK------KPYKCNVCEKTFTRSHDLKRHQRTHTGEKPFKCKVCEKAFSQAGTLKIHLRIHTGERPFSCDVCAKSFRVLSNLNYHMRIHS 520
F FHT +K ++ V +HK K KCN CEK F++ L HQR HTGEKP++C C KAFSQ+ L H RIHTGE+PF C C K+F ++L H R+H+
Sbjct: 200 FNFHTDKKSLKTHSVVKKHKQDRGEKKLLKCNDCEKIFSKISTLTLHQRIHTGEKPYECIECGKAFSQSAHLAQHQRIHTGEKPFECTECGKAFSQNAHLVQHQRVHT 307 The following BLAST results are available for this feature:
BLAST of TCONS_00021979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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