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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021978 ID=TCONS_00021978|Name=TCONS_00021978|organism=Clytia hemisphaerica|type=transcript|length=1390bpRun BLAST on NCBI transcript from alignment at sc0000401:271392..272846+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021978 ID=TCONS_00021978|Name=TCONS_00021978|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at sc0000401:271392..272846+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021978 vs. Swiss-Prot (Human)
Match: ZN300 (Zinc finger protein 300 OS=Homo sapiens GN=ZNF300 PE=1 SV=1) HSP 1 Score: 295.434 bits (755), Expect = 2.170e-92 Identity = 148/280 (52.86%), Postives = 184/280 (65.71%), Query Frame = -3
Query: 225 KSYQCEACGKKFSWKSSLDLHKKVHTGEKMFECEVCGKSFIKNSHLEQHMRIHTGEKPFKCEVCGKFFAHKFILNKHTRIHTGEKRFACDVCEKKFTQKSSLLYHKTIHTGEKPFQCHVCSKSFPSKSSLTAHLKTHSDGYEPIRAFECEICDRTFTGKSQLNNHNRTHTGEKPFKCESCGNGFARKSHLHQHMRIHTGEKPFECQVCGKKFTNKSHLTNHALTHTGEKPFKCDICDNVFARKTTLDSHKRSHTGEKPFECDVCGNKFTNKSHLNRHNKI 1064
K Y C CGK FS KSSL +H++VHTGEK +EC CGK+F + S L H RIHTGEKP++C CGK F+ K L H R HTGEK + C C K F +KS L+ HK IHTGEKP++C C ++F K+ L H H+ G +P +EC C +TF+ KSQL H RTHTGEKP+KC CG F +KSHL H RIHTGEKP+ C CGK F+ KSHL H HTGEKP+ C C F++K+ L H+R HTGE+P++C +CG F KS L H +I
Sbjct: 323 KPYDCSECGKAFSQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHT-GEKP---YECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSDLVLHQRIHTGERPYQCAICGKAFIQKSQLTVHQRI 598 HSP 2 Score: 281.182 bits (718), Expect = 5.445e-87 Identity = 141/284 (49.65%), Postives = 181/284 (63.73%), Query Frame = -3
Query: 225 DSDGKSYQCEACGKKFSWKSSLDLHKKVHTGEKMFECEVCGKSFIKNSHLEQHMRIHTGEKPFKCEVCGKFFAHKFILNKHTRIHTGEKRFACDVCEKKFTQKSSLLYHKTIHTGEKPFQCHVCSKSFPSKSSLTAHLKTHSDGYEPIRAFECEICDRTFTGKSQLNNHNRTHTGEKPFKCESCGNGFARKSHLHQHMRIHTGEKPFECQVCGKKFTNKSHLTNHALTHTGEKPFKCDICDNVFARKTTLDSHKRSHTGEKPFECDVCGNKFTNKSHLNRHNKI 1076
++ KS C CGK F+ KS L +H+++HTG+K ++C CGK+F + HL H R HTGEKP+ C CGK F+ K L H R+HTGEK + C C K F+QKS L+ H+ IHTGEKP++C C K+F KS L H + H+ G +P +EC C + F KS L H R HTGEKP+KC C F+RK+ L H +HTGEKP+EC CGK F+ KS L H THTGEKP+KC C F +K+ L H+R HTGEKP+ C CG F+ KSHL H +I
Sbjct: 263 ETKEKSCVCVTCGKAFAKKSQLIVHQRIHTGKKPYDCGACGKAFSEKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHT-GEKP---YECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRI 542 HSP 3 Score: 271.937 bits (694), Expect = 2.208e-83 Identity = 144/306 (47.06%), Postives = 188/306 (61.44%), Query Frame = -3
Query: 225 EQSTSVPKKNSMPDQASSLQNDSDGK-SYQCEACGKKFSWKSSLDLHKKVHTGEKMFECEVCGKSFIKNSHLEQHMRIHTGEKPFKCEVCGKFFAHKFILNKHTRIHTGEKRFACDVCEKKFTQKSSLLYHKTIHTGEKPFQCHVCSKSFPSKSSLTAHLKTHSDGYEPIRAFECEICDRTFTGKSQLNNHNRTHTGEKPFKCESCGNGFARKSHLHQHMRIHTGEKPFECQVCGKKFTNKSHLTNHALTHTGEKPFKCDICDNVFARKTTLDSHKRSHTGEKPFECDVCGNKFTNKSHLNRHNKI 1139
+QS K +S + S+L+ +G + CG F SL ++ V T EK C CGK+F K S L H RIHTG+KP+ C CGK F+ KF L H R HTGEK + C C K F+QKSSL+ H+ +HTGEKP++C C K+F KS L H + H+ G +P +EC C + F+ KSQL H+R HTGEKP++C CG F KSHL H RIHTGEKP++C C + F+ K+ L H L HTGEKP++C C F+RK+ L H+R+HTGEKP++C CG F KSHL H +I
Sbjct: 213 DQSFGGGKSSSQSEPNSNLEKIHNGVIPFDDNQCGNVFRNTQSLIQYQNVETKEKSCVCVTCGKAFAKKSQLIVHQRIHTGKKPYDCGACGKAFSEKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHTGEKPYECSECGKAFSQKSPLIIHQRIHT-GEKP---YECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHTGEKPYKCSECGKAFCQKSHLIGHQRI 514 HSP 4 Score: 259.61 bits (662), Expect = 9.261e-79 Identity = 128/254 (50.39%), Postives = 166/254 (65.35%), Query Frame = -3
Query: 303 KSYQCEACGKKFSWKSSLDLHKKVHTGEKMFECEVCGKSFIKNSHLEQHMRIHTGEKPFKCEVCGKFFAHKFILNKHTRIHTGEKRFACDVCEKKFTQKSSLLYHKTIHTGEKPFQCHVCSKSFPSKSSLTAHLKTHSDGYEPIRAFECEICDRTFTGKSQLNNHNRTHTGEKPFKCESCGNGFARKSHLHQHMRIHTGEKPFECQVCGKKFTNKSHLTNHALTHTGEKPFKCDICDNVFARKTTLDSHKRSHT 1064
K Y+C CGK FS KS L +H+++HTGEK +EC CGK+F + S L H R HTGEKP++C CGK F K L H RIHTGEK + C CE+ F++K+ L+ H+ +HTGEKP++C C K+F KS L H +TH+ G +P ++C C + F KS L H R HTGEKP+ C CG F++KSHL H RIHTGEKP+ C CGK F+ KS L H HTGE+P++C IC F +K+ L H+R HT
Sbjct: 351 KPYECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQRTHT-GEKP---YKCSECGKAFCQKSHLIGHQRIHTGEKPYICTECGKAFSQKSHLPGHQRIHTGEKPYICAECGKAFSQKSDLVLHQRIHTGERPYQCAICGKAFIQKSQLTVHQRIHT 600 HSP 5 Score: 237.269 bits (604), Expect = 2.036e-70 Identity = 135/299 (45.15%), Postives = 170/299 (56.86%), Query Frame = -3
Query: 228 KKNSMP--DQASSLQNDSDGKSYQCEACGKKFSWKSSLDLHKKVHTGEKMFECEVCGKSFIKNSHLEQHMRIHTGEKPFKCEVCGKFFAHKFILNKHTRIHTGEKRFACDVCEKKFTQKSSLLYHKTIHTGEKPFQCHVCSKSFPSKSSLTAHLKTHSDGYEPIRAFECEICDRTFTGKSQLNNHNRTHTGEKPFKCESCGNGFARKSHLHQHMRIHTGEKPFECQVCGKKFTNKSHLTNHALTHTGEKPFKCDICDNVFARKTTLDSHKRSHTGEKPFECDVCGNKFTNKSHLNRHNK 1118
KKN P D S +++S K Q GK S +K+H G F+ CG F L Q+ + T EK C CGK FA K L H RIHTG+K + C C K F++K L+ H+ HTGEKP+ C C K+F KSSL H + H+ G +P +EC C + F+ KS L H R HTGEKP++C CG F++KS L H R HTGEKP+EC CGK F KSHL H HTGEKP+KC C+ F+RKT L +H+ HTGEKP+EC CG F+ KS L H +
Sbjct: 191 KKNLKPNIDLPSCYKSNSRKKPDQSFGGGKSSSQSEPNSNLEKIHNGVIPFDDNQCGNVFRNTQSLIQYQNVETKEKSCVCVTCGKAFAKKSQLIVHQRIHTGKKPYDCGACGKAFSEKFHLVVHQRTHTGEKPYDCSECGKAFSQKSSLIIHQRVHT-GEKP---YECSECGKAFSQKSPLIIHQRIHTGEKPYECRECGKAFSQKSQLIIHHRAHTGEKPYECTECGKAFCEKSHLIIHKRIHTGEKPYKCAQCEEAFSRKTELITHQLVHTGEKPYECTECGKTFSRKSQLIIHQR 485 The following BLAST results are available for this feature:
BLAST of TCONS_00021978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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