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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021954 ID=TCONS_00021954|Name=TCONS_00021954|organism=Clytia hemisphaerica|type=transcript|length=1567bp
TGGAGACTAAAATTTTCTTGGTTAGAAAAAGGATAGAAAAGTGAAGAACG
AAGAAAGTGGAAGTAGATGACATGATATCAAGAAAAAAATGGAACAATTA
TTCCTTAAAATCATGATATTGTATCTTATATTTATTCAAAGAGTAGAAAC
ATCAAATATTTTACAAGACAAAAATGTTTGTagcaatgaaaatttttatt
tgagaaaagttgaaaagagGACCATCAAACTAAAAGAAACGCCGATCGAA
ATTCCTGGAATTCAATATTATCAGCAATGTTTTGCTCAATGCCAGAAACA
CCAATGTTCTATCTTCGACTTCCGAAAACCAGTTAATGGAGAGAATTCTG
GATCATGCTCAGTTTATcctggaaaatctgaaaaacgtACCCAAGTATCG
ACAAGATTCGTGGAGAATGGAAATCACTCTTTCTTTGAACGTGTACCTTG
TCCGCtggaaaaacctgaaaaatccaTTCAAGGCACATTCAAAGAAGCAA
AAAGTTGCTCTGATGTCAAAAACTTTGGTGGAACGCAATCCGGTTTGTAT
GAAATCAATGAAACCATAAAAACCTCTTCATCAAATCACCTCCAGTATAT
TCTTTGCAATATGAATGAATTAGGAGGTGGTTGGACGACCATTATGCATA
ATCAAGGTGATATCACATTTGCTGGTGACTGGGAAGCTTACAAACAAGGA
TTTGGAGATTACAGAAAATCATTTTGGGCTGGTAATAACTTTATTCATCA
ATTGACAGCGAATGAAGATACAGAGCTTCTGGTGATTCTAAAGGATGATC
AATCAGTTATGTATTATGGTCACTACAAAACTTTCTTTATTGGTGACGAA
GGATCTAACTACAAATTAACCATTGGCCAACACAGAGAAATACCTGGCGT
TATCAATTTACCGCAAAGTGTAGATGATCAGTTTTATGTACACAATCGTG
CGCCATTCTCGACAAAAGACAAAGACTGGTCTTCAAAAGAATGTGCAATT
GATTTTGACGTTGGCTGGTGGTTTACAGGCTGCTACAAGGTGGATCTTGT
CAGTCAAGTTTGTGGAGAAGAAACCAATTACCTCACAGGCAACTCTGGCA
TTCATTGGCATGATGCAAAAAATTCTGGATGGGAAAATTATTGTTTCACT
GAGTCTACAATGTTAGTTCGAAAACACCGAAATTGAAACACTGGTCTTTA
GGATCTGAATAACGTCCAAATATGGCTGAGTATTTGAATTCCATCGTTCA
AATTAGATAATTCAGCTCAGATGGAAAATGTAGCGCAGTTTTTGCAGTGA
AGATAAGTTTACTtggttattttcagcggggacaaaagcTAGAGTATAAA
TTTCCACTCGGACGATATTTGGCGAATTTTTCCAATGGGGAAGGGGTCtc
atcgggtctgtgagaaggtggTGGATGTAGTATTGTAAGTAAAGAGAATG
AATTTGACACTTTTAGTTAGTTTATTTAATAATCACTCAGCACATGATGA
AATTTTTCCGCTAATCTCAAACCTTGAAAAAAACTCCTAATTTAACTGGT
TGAGTTTCTGATTGCAC Run BLAST on NCBI protein sequence of TCONS_00021954-protein >TCONS_00021954-protein ID=TCONS_00021954-protein|Name=TCONS_00021954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MEQLFLKIMILYLIFIQRVETSNILQDKNVCSNENFYLRKVEKRTIKLKE
TPIEIPGIQYYQQCFAQCQKHQCSIFDFRKPVNGENSGSCSVYPGKSEKR
TQVSTRFVENGNHSFFERVPCPLEKPEKSIQGTFKEAKSCSDVKNFGGTQ
SGLYEINETIKTSSSNHLQYILCNMNELGGGWTTIMHNQGDITFAGDWEA
YKQGFGDYRKSFWAGNNFIHQLTANEDTELLVILKDDQSVMYYGHYKTFF
IGDEGSNYKLTIGQHREIPGVINLPQSVDDQFYVHNRAPFSTKDKDWSSK
ECAIDFDVGWWFTGCYKVDLVSQVCGEETNYLTGNSGIHWHDAKNSGWEN
YCFTESTMLVRKHRN Run BLAST on NCBI transcript from alignment at sc0000400:76067..77633 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021954 ID=TCONS_00021954|Name=TCONS_00021954|organism=Clytia hemisphaerica|type=transcript|length=1567bp|location=Sequence derived from alignment at sc0000400:76067..77633 (Clytia hemisphaerica)
GTGCAATCAGAAACTCAACCAGTTAAATTAGGAGTTTTTTTCAAGGTTTG
AGATTAGCGGAAAAATTTCATCATGTGCTGAGTGATTATTAAATAAACTA
ACTAAAAGTGTCAAATTCATTCTCTTTACTTACAATACTACATCCAccac
cttctcacagacccgatgaGACCCCTTCCCCATTGGAAAAATTCGCCAAA
TATCGTCCGAGTGGAAATTTATACTCTAgcttttgtccccgctgaaaata
accaAGTAAACTTATCTTCACTGCAAAAACTGCGCTACATTTTCCATCTG
AGCTGAATTATCTAATTTGAACGATGGAATTCAAATACTCAGCCATATTT
GGACGTTATTCAGATCCTAAAGACCAGTGTTTCAATTTCGGTGTTTTCGA
ACTAACATTGTAGACTCAGTGAAACAATAATTTTCCCATCCAGAATTTTT
TGCATCATGCCAATGAATGCCAGAGTTGCCTGTGAGGTAATTGGTTTCTT
CTCCACAAACTTGACTGACAAGATCCACCTTGTAGCAGCCTGTAAACCAC
CAGCCAACGTCAAAATCAATTGCACATTCTTTTGAAGACCAGTCTTTGTC
TTTTGTCGAGAATGGCGCACGATTGTGTACATAAAACTGATCATCTACAC
TTTGCGGTAAATTGATAACGCCAGGTATTTCTCTGTGTTGGCCAATGGTT
AATTTGTAGTTAGATCCTTCGTCACCAATAAAGAAAGTTTTGTAGTGACC
ATAATACATAACTGATTGATCATCCTTTAGAATCACCAGAAGCTCTGTAT
CTTCATTCGCTGTCAATTGATGAATAAAGTTATTACCAGCCCAAAATGAT
TTTCTGTAATCTCCAAATCCTTGTTTGTAAGCTTCCCAGTCACCAGCAAA
TGTGATATCACCTTGATTATGCATAATGGTCGTCCAACCACCTCCTAATT
CATTCATATTGCAAAGAATATACTGGAGGTGATTTGATGAAGAGGTTTTT
ATGGTTTCATTGATTTCATACAAACCGGATTGCGTTCCACCAAAGTTTTT
GACATCAGAGCAACTTTTTGCTTCTTTGAATGTGCCTTGAAtggattttt
caggtttttccaGCGGACAAGGTACACGTTCAAAGAAAGAGTGATTTCCA
TTCTCCACGAATCTTGTCGATACTTGGGTacgtttttcagattttccagg
ATAAACTGAGCATGATCCAGAATTCTCTCCATTAACTGGTTTTCGGAAGT
CGAAGATAGAACATTGGTGTTTCTGGCATTGAGCAAAACATTGCTGATAA
TATTGAATTCCAGGAATTTCGATCGGCGTTTCTTTTAGTTTGATGGTCct
cttttcaacttttctcaaataaaaattttcattgctACAAACATTTTTGT
CTTGTAAAATATTTGATGTTTCTACTCTTTGAATAAATATAAGATACAAT
ATCATGATTTTAAGGAATAATTGTTCCATTTTTTTCTTGATATCATGTCA
TCTACTTCCACTTTCTTCGTTCTTCACTTTTCTATCCTTTTTCTAACCAA
GAAAATTTTAGTCTCCA Coding sequence (CDS) from alignment at sc0000400:76067..77633 >TCONS_00021954 ID=TCONS_00021954|Name=TCONS_00021954|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000400:76067..77633 (Clytia hemisphaerica)
TCAATTTCGGTGTTTTCGAACTAACATTGTAGACTCAGTGAAACAATAAT
TTTCCCATCCAGAATTTTTTGCATCATGCCAATGAATGCCAGAGTTGCCT
GTGAGGTAATTGGTTTCTTCTCCACAAACTTGACTGACAAGATCCACCTT
GTAGCAGCCTGTAAACCACCAGCCAACGTCAAAATCAATTGCACATTCTT
TTGAAGACCAGTCTTTGTCTTTTGTCGAGAATGGCGCACGATTGTGTACA
TAAAACTGATCATCTACACTTTGCGGTAAATTGATAACGCCAGGTATTTC
TCTGTGTTGGCCAATGGTTAATTTGTAGTTAGATCCTTCGTCACCAATAA
AGAAAGTTTTGTAGTGACCATAATACATAACTGATTGATCATCCTTTAGA
ATCACCAGAAGCTCTGTATCTTCATTCGCTGTCAATTGATGAATAAAGTT
ATTACCAGCCCAAAATGATTTTCTGTAATCTCCAAATCCTTGTTTGTAAG
CTTCCCAGTCACCAGCAAATGTGATATCACCTTGATTATGCATAATGGTC
GTCCAACCACCTCCTAATTCATTCATATTGCAAAGAATATACTGGAGGTG
ATTTGATGAAGAGGTTTTTATGGTTTCATTGATTTCATACAAACCGGATT
GCGTTCCACCAAAGTTTTTGACATCAGAGCAACTTTTTGCTTCTTTGAAT
GTGCCTTGAAtggatttttcaggtttttccaGCGGACAAGGTACACGTTC
AAAGAAAGAGTGATTTCCATTCTCCACGAATCTTGTCGATACTTGGGTac
gtttttcagattttccaggATAAACTGAGCATGATCCAGAATTCTCTCCA
TTAACTGGTTTTCGGAAGTCGAAGATAGAACATTGGTGTTTCTGGCATTG
AGCAAAACATTGCTGATAATATTGAATTCCAGGAATTTCGATCGGCGTTT
CTTTTAGTTTGATGGTCctcttttcaacttttctcaaataaaaattttca
ttgctACAAACATTTTTGTCTTGTAAAATATTTGATGTTTCTACTCTTTG
AATAAATATAAGATACAATATCATGATTTTAAGGAATAATTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021954-exon-sc0000400-1491911889:76067..77633 | TCONS_00021954-exon-sc0000400-1491911889:76067..77633 | Clytia hemisphaerica | exon |
| TCONS_00021954-exon-sc0000400-1510915933:76067..77633 | TCONS_00021954-exon-sc0000400-1510915933:76067..77633 | Clytia hemisphaerica | exon |
| TCONS_00021954-exon-sc0000400-1575043694:76067..77633 | TCONS_00021954-exon-sc0000400-1575043694:76067..77633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000400 | supercontig | sc0000400:76067..77633 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021954 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.735e-26 Identity = 82/245 (33.47%), Postives = 112/245 (45.71%), Query Frame = 2
Query: 461 KPEKSIQGTFKEAKSCSDVKNFGGTQSGLYEINETIKTSSSNHLQYILCNMNELGGGWTTIMHN-QGDITFAGDWEAYKQGFGDYRKSFWAGNNFIHQLTANEDTELLVILKDDQSVMYYGHYKTFFIGDEGSNYKLTIGQHREIPGVINLPQSVDDQFYVHNRAPFSTKDK--DWSSKECAIDFDVGWWFTGCYKVDLVSQVCGEETNYLTGN-----SGIHWHDAKNSGWENYCFTESTMLVR 1171
+P+ + G ++C D+ + G SG + TI L +LC+M+ GGGWT G + F DW YKQGFG FW GN+ IH LTA +EL V L D + + Y++F + DE Y L +G E S D HN FSTKD+ D ++ CA+ F WW+ C+ VS + G YL G +GI+W K NY + S M VR
Sbjct: 94 EPQPCLTG----PRTCKDLLDRGHFLSGWH----TIYLPDCRPLT-VLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTSELRVDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVE--------GSAGDSLTFHNNQSFSTKDQDNDLNTGNCAVMFQGAWWYKNCH----VSNLNGR---YLRGTHGSFANGINWKSGKGY---NYSYKVSEMKVR 311
The following BLAST results are available for this feature:
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