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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021887 ID=TCONS_00021887|Name=TCONS_00021887|organism=Clytia hemisphaerica|type=transcript|length=1680bp
tattcattaatttttcatgtttttcgtTCGGCAAAATTTTTCCTTGTGAG
CAAAAATATTCATATAAAAAGGATCGAATGATTCTCACATGACAGAAAAT
TAAAGAAGTATACATTAAATTTAACTTTGACTTTTCAAGCTAAGAAGAAA
TTTTCTCTTGTGTTTTGAGtaaattttagaaataaaatataAGAATGCCT
TGTGAAGTGAAATGCAATTGTCAAACTTGTTATAGACGTAGAGCATCAGG
GATCGATTTGTTGAACAAATACCGTGTTTTGCACCGACCAGGACATTGTT
GTGGACAGCGAACCAATTGTATTCAACATCGAATTGGTTATCAACTATTC
AAGCCTTCCAACATACTCAAAAAATGATTGGATGAGTGGATTTTGAAAGA
TCAACAAGAAGTGCACaatgataaaatattgaaaataaaatatttataac
aaaaaaaaacttttaaaaatcttcaaaaaaatcgtaaaataaataagaac
aaatataaaaagctTTGTAAATATGATGTTATTATTCCCCGGGGGGTCAC
Tcgtatgatctggcctacgtcatgtgccgcgcttaaggatggggtttttc
agcacttcaaactgcactgtaagggtgtgtttctgtgagattgcactgca
agggtcgaattttaaaacaaattcaaaataattgataaaacaaaaggttt
ttacttcttgtttgttttaaaaagtttctAGTGTCTGATAATTaaagctg
acaagaataattttctcagtttttcttttaaacagaaaatttcccaagct
tctttttTCATGCAGATTTACAGCGgaaaaatatagtgcactataagggg
tgGGTAAATCataagaaaatgcactgaaagggtaccttttcagccatatt
gaactgcactgtaagggtacgattttgaaaagcagattttgcgcggcaca
taccgtcgtttcgaaatcgagtgccccccgggTATTATTCCAACAAATTG
ATACATTTGACTTGGActattttaaatgaaatttcaaaatattatatgAT
TTTATTGTAATATAAATTCTTATCATGTCATGAATTATCATGTCCGAGAA
AAGGGAGACCAAtatttcaatttagaaaatCCTAATCTATAACTTGACTT
CATTACAAATTAATTTACTTAATTCCTTTTATGTCACAGTCCTGATGGGA
CCCCTATCAACTGgtaaatttggctaaaattttgtcCCTGtcgggaaaaa
taccctacaatttcagcttCACTGGAAAATTGGCTTTACTTTCATtccca
ttttgaattttaatgaaaaaaaatgtactccaaaaccatacCCACTAGTT
TTATTTGAcctgggaacaatagaatttgggattgggatttcgatagaaat
ttttatatttagcTGCGAGAAGAACTTCCAACGAagctatgagacagggg
tgttattatGAATAACcagaaaagaaaatacttttGGAATTAAATATCTT
AAGAAACAATAAAACTTTCTTTGTTACTCATCTTTTCCCATTATCCATGA
CGCGACGAATATAAAGGACTTTTTTTTGTGTGATGCTCTTCAGCTATTCC
GGGCACattataaattttaattttaatttgtattttattaaatATTATAT
TATAGAATATATACCCATATTTAATTagaa Run BLAST on NCBI transcript from alignment at sc0000396:281844..285075+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021887 ID=TCONS_00021887|Name=TCONS_00021887|organism=Clytia hemisphaerica|type=transcript|length=3232bp|location=Sequence derived from alignment at sc0000396:281844..285075+ (Clytia hemisphaerica)
tattcattaatttttcatgtttttcgtTCGGCAAAATTTTTCCTTGTGAG
CAAAAATATTCATATAAAAAGGATCGAATGATTCTCACATGACAGAAAAT
TAAAGAAGTATACATTAAATTTAACTTTGACTTTTCAAGCTAAGAAGAAA
TTTTCTCTTGTGTTTTGAGtaaattttagaaataaaatataAGGTAGGTT
ACTATTCTATTCTTGcggaaaagaaattttaagtaTATAAAACAActata
aatttgataaaaaaatcaaatgatgaaAACAAGATATATTATTGGCACGC
ACAATCGGATAAAATTGCTGTTCAAAGCTGACAAATTTGTTATAATTGAA
TATTTGACGTCATTAGTTGGCTTAGCGAGTTTTTGCGTTtatcttaaggc
cggtctccactttcgcgcgagaTGGGTGTTtatttcttaaccttttttgc
ctggaGAAAAGATTACTAAAAAGTTTTACAtgaacttttttcatccgtta
cgtcaatttcgaccaatgaaattgcttcatttttcaaccgaccaataacc
ttgcaaaaacgtcaaaaagtatTCGCTCAtatcgcgcgaaagtggagacc
gacctttagaagcgaaaatcaaaattgaacttttgaatTGACGTCAGATC
ATAAAATCTGAACGTAAATAGCAATTTTCCAGATGATTTAACATATTTAT
AAGAAGAACTTTAGTGTAGCTTTGAAACAGCATTGAAAGCACGGGGGAGG
GTTTCGTACAGAAAAAGGGTCCAGGGAACAGGGGAAGGGGTAAAACGAAg
gtttaaattatttttgtattattgaAAAGACAATAAAAATTTGTGTGATC
AAATTTCACCcaggtaataaaaaaaaaatttttattcaaattttaacaaT
ATTGACCTTCTTAGGGATCATTGCCAGGTTACCAAAATATTATTGGAGTT
AATTCCTCTTTTATGACCTTTATGACCTTATGTATTTTTAGTCACAtgga
aaatgtcatttttttaaGCTAAACGAATGAGTGGATAGCTTATCAGCAAT
GATTGTATGAGAGAAGGACACACCTTTACGATTCTTTAAATATTTGAATC
TtttagaaaaatcgaaaaatacaTAAGTACGTAATAACTGACTTATTAAA
CTTTCCGTTTTGATGTACaggaaaaattttcagcttttagAGGTTTTCAT
CAGCAGGTTACTAGgaagttcaatttctttttcgttATATGTTAATTTGA
TGTTATCATAGATTGATTAAGGTAAGGGCCTAGCGCCTAGGGAAAGAGAA
GAAGTGTCTGATATTTATCGTACCGTACAACCAAGGGTGCGAGTTTGATC
CCCACCCAGTCAATTCAAGACCTTGAAGTGGTTTTCGTGAGGGCGTGATT
GGCGTTTTTTCAAGTTCGTGATTTGTAATTTCAgagtgcgtgattgcgtg
atcggagGAACCAACGTAATCAACGTAATTGTTATAGAAAGGGAATTTAA
CTCGTAAaacgtgatttggaattttttttgcgcaatTACGTGATTTGAAA
GGTGTACTGAGGgctttcttgaaaattttttcctctAACCCTCTTGCCAT
GGTAAGGAAATAGGAAATAGTTGAGTGTAAGGAGTGTATGCCCATCTACC
TTTGGGCTCTTGGTAGAcagtaaatgaaaaagaaagcttTTGGTCGCCCT
CGATTGCGTTCTTAAACTTACTGAAACTTATTCTACTTCTTATAGAATGC
CTTGTGAAGTGAAATGCAATTGTCAAACTTGTTATAGACGTAGAGCATCA
GGGATCGATTTGTTGAACAAATACCGTGTTTTGCACCGACCAGGACATTG
TTGTGGACAGCGAACCAATTGTATTCAACATCGAATTGGTTATCAACTAT
TCAAGCCTTCCAACATACTCAAAAAATGATTGGATGAGTGGATTTTGAAA
GATCAACAAGAAGTGCACaatgataaaatattgaaaataaaatatttata
acaaaaaaaaacttttaaaaatcttcaaaaaaatcgtaaaataaataaga
acaaatataaaaagctTTGTAAATATGATGTTATTATTCCCCGGGGGGTC
ACTcgtatgatctggcctacgtcatgtgccgcgcttaaggatggggtttt
tcagcacttcaaactgcactgtaagggtgtgtttctgtgagattgcactg
caagggtcgaattttaaaacaaattcaaaataattgataaaacaaaaggt
ttttacttcttgtttgttttaaaaagtttctAGTGTCTGATAATTaaagc
tgacaagaataattttctcagtttttcttttaaacagaaaatttcccaag
cttctttttTCATGCAGATTTACAGCGgaaaaatatagtgcactataagg
ggtgGGTAAATCataagaaaatgcactgaaagggtaccttttcagccata
ttgaactgcactgtaagggtacgattttgaaaagcagattttgcgcggca
cataccgtcgtttcgaaatcgagtgccccccgggTATTATTCCAACAAAT
TGATACATTTGACTTGGActattttaaatgaaatttcaaaatattatatg
ATTTTATTGTAATATAAATTCTTATCATGTCATGAATTATCATGTCCGAG
AAAAGGGAGACCAAtatttcaatttagaaaatCCTAATCTATAACTTGAC
TTCATTACAAATTAATTTACTTAATTCCTTTTATGTCACAGTCCTGATGG
GACCCCTATCAACTGgtaaatttggctaaaattttgtcCCTGtcgggaaa
aataccctacaatttcagcttCACTGGAAAATTGGCTTTACTTTCATtcc
cattttgaattttaatgaaaaaaaatgtactccaaaaccatacCCACTAG
TTTTATTTGAcctgggaacaatagaatttgggattgggatttcgatagaa
atttttatatttagcTGCGAGAAGAACTTCCAACGAagctatgagacagg
ggtgttattatGAATAACcagaaaagaaaatacttttGGAATTAAATATC
TTAAGAAACAATAAAACTTTCTTTGTTACTCATCTTTTCCCATTATCCAT
GACGCGACGAATATAAAGGACTTTTTTTTGTGTGATGCTCTTCAGCTATT
CCGGGCACattataaattttaattttaatttgtattttattaaatATTAT
ATTATAGAATATATACCCATATTTAATTagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021887-exon-sc0000396-1491911889:281844..282036 | TCONS_00021887-exon-sc0000396-1491911889:281844..282036 | Clytia hemisphaerica | exon |
| TCONS_00021887-exon-sc0000396-1510915933:281844..282036 | TCONS_00021887-exon-sc0000396-1510915933:281844..282036 | Clytia hemisphaerica | exon |
| TCONS_00021887-exon-sc0000396-1575043694:281844..282036 | TCONS_00021887-exon-sc0000396-1575043694:281844..282036 | Clytia hemisphaerica | exon |
| TCONS_00021887-exon-sc0000396-1491911889:283589..285075 | TCONS_00021887-exon-sc0000396-1491911889:283589..285075 | Clytia hemisphaerica | exon |
| TCONS_00021887-exon-sc0000396-1510915933:283589..285075 | TCONS_00021887-exon-sc0000396-1510915933:283589..285075 | Clytia hemisphaerica | exon |
| TCONS_00021887-exon-sc0000396-1575043694:283589..285075 | TCONS_00021887-exon-sc0000396-1575043694:283589..285075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:281844..285075 + |
Blast
The following BLAST results are available for this feature:
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