TCONS_00021886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021886
Unique NameTCONS_00021886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021886 ID=TCONS_00021886|Name=TCONS_00021886|organism=Clytia hemisphaerica|type=transcript|length=448bp
AACAAAAAGAAGATTAACACAAACAAAAATTGGATCTtttgatttcaaac
tttttacaaaaaacaaaaatgaagatgttAAAAGCTTTATTGTTGATCTC
TTTTGTCGTATATGCTGTACATTGCACTCCAAAccacgaagaagaagaaa
aggaactgagtgaaattgaagaaattcttcaaaaggaATTGACACAAAAT
GATGATGAAGATTTGAGGGATCCAAAACCAATATTTTCTTTCGTGAAAAG
CCTTTTTAGTCGAAGAAGAAGTAGTTCACATGATGAAAGATATGCAGCAA
ATGTCAACGACCCGAAAACTTTCAAACCATTCCGATGGATCAAAAGCAAA
CTGACCAGAAGACGTGGTACTGTCATTGTTCACCGACGAACTGGATCAAG
AACCCGCTAATAGCTTCACCTTAAAAACAATATTTATGTCTGACATAT
Run BLAST on NCBI

protein sequence of TCONS_00021886-protein

>TCONS_00021886-protein ID=TCONS_00021886-protein|Name=TCONS_00021886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MKMLKALLLISFVVYAVHCTPNHEEEEKELSEIEEILQKELTQNDDEDLR
DPKPIFSFVKSLFSRRRSSSHDERYAANVNDPKTFKPFRWIKSKLTRRRG
TVIVHRRTGSRTR
Run BLAST on NCBI

transcript from alignment at sc0000396:273099..274144+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021886 ID=TCONS_00021886|Name=TCONS_00021886|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at sc0000396:273099..274144+ (Clytia hemisphaerica)
AACAAAAAGAAGATTAACACAAACAAAAATTGGATCTtttgatttcaaac
tttttacaaaaaacaaaaatgaagatgttAAAAGCTTTATTGTTGATCTC
TTTTGTCGTATATGCTGTACATTGTAAGTaaattattatatattatatat
attttcagtgaaaatttttatcaaaactgaATTCCTTAACTAGACAATAA
TCCTGGGGggaggtactagggttggcaaGTTAGGGgcatgtgcggacggg
acctccaaaaaaacgaccctttgagagagtgatttttgctgaaaaggtga
cgcTTAGAATTTTCTTAGACTTTTGCAAAAAGAGAGAGACTTTTTTAATT
cttaaaaatcgtgaattttccgaccttTGGAGAGACTACTGAAAGGtaaa
aaacccgacccttaccgtctgcacatacccagcacctatttttgcgtAAG
TGCCCCCCTCCCGGGACAATAATAGCATATTGACAAATTTTGAGGAATAA
TGGAAAACGTTTAGCTGGAGTAATTTTTACAGGGCTTTTACATACTAGGA
AAGTAAAGAAACTGGTGGCTGGGATTACCAAGTTACCAAGAATAAGATCA
ATAAAATTATGGATAATTACAAAAGGATACCCTGAGCACCATCATCTTAG
AGGGTTTCTCTAATATTAGAATGCGCACGCtgctaaaaagattttaatat
aGAAAACCTTTTTTGTTTTAGGCACTCCAAAccacgaagaagaagaaaag
gaactgagtgaaattgaagaaattcttcaaaaggaATTGACACAAAATGA
TGATGAAGATTTGAGGGATCCAAAACCAATATTTTCTTTCGTGAAAAGCC
TTTTTAGTCGAAGAAGAAGTAGTTCACATGATGAAAGATATGCAGCAAAT
GTCAACGACCCGAAAACTTTCAAACCATTCCGATGGATCAAAAGCAAACT
GACCAGAAGACGTGGTACTGTCATTGTTCACCGACGAACTGGATCAAGAA
CCCGCTAATAGCTTCACCTTAAAAACAATATTTATGTCTGACATAT

Coding sequence (CDS) from alignment at sc0000396:273099..274144+

>TCONS_00021886 ID=TCONS_00021886|Name=TCONS_00021886|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000396:273099..274144+ (Clytia hemisphaerica)
atgaagatgttAAAAGCTTTATTGTTGATCTCTTTTGTCGTATATGCTGT
ACATTGCACTCCAAAccacgaagaagaagaaaaggaactgagtgaaattg
aagaaattcttcaaaaggaATTGACACAAAATGATGATGAAGATTTGAGG
GATCCAAAACCAATATTTTCTTTCGTGAAAAGCCTTTTTAGTCGAAGAAG
AAGTAGTTCACATGATGAAAGATATGCAGCAAATGTCAACGACCCGAAAA
CTTTCAAACCATTCCGATGGATCAAAAGCAAACTGACCAGAAGACGTGGT
ACTGTCATTGTTCACCGACGAACTGGATCAAGAACCCGCTAAatgaagat
gttAAAAGCTTTATTGTTGATCTCTTTTGTCGTATATGCTGTACATTGCA
CTCCAAAccacgaagaagaagaaaaggaactgagtgaaattgaagaaatt
cttcaaaaggaATTGACACAAAATGATGATGAAGATTTGAGGGATCCAAA
ACCAATATTTTCTTTCGTGAAAAGCCTTTTTAGTCGAAGAAGAAGTAGTT
CACATGATGAAAGATATGCAGCAAATGTCAACGACCCGAAAACTTTCAAA
CCATTCCGATGGATCAAAAGCAAACTGACCAGAAGACGTGGTACTGTCAT
TGTTCACCGACGAACTGGATCAAGAACCCGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012280XLOC_012280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021886-proteinTCONS_00021886-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021886-exon-sc0000396-1491911889:273099..273221TCONS_00021886-exon-sc0000396-1491911889:273099..273221Clytia hemisphaericaexon
TCONS_00021886-exon-sc0000396-1510915933:273099..273221TCONS_00021886-exon-sc0000396-1510915933:273099..273221Clytia hemisphaericaexon
TCONS_00021886-exon-sc0000396-1575043694:273099..273221TCONS_00021886-exon-sc0000396-1575043694:273099..273221Clytia hemisphaericaexon
TCONS_00021886-exon-sc0000396-1491911889:273820..274144TCONS_00021886-exon-sc0000396-1491911889:273820..274144Clytia hemisphaericaexon
TCONS_00021886-exon-sc0000396-1510915933:273820..274144TCONS_00021886-exon-sc0000396-1510915933:273820..274144Clytia hemisphaericaexon
TCONS_00021886-exon-sc0000396-1575043694:273820..274144TCONS_00021886-exon-sc0000396-1575043694:273820..274144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:273099..274144 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07777	1.05362	1.40555	1.15346	2.03552	1.70584	0	1.2329	0.620915	0.360623	0.902352	0	0.575251	0.879687	0.992548	0.219929	0	0.779986	0	0	0.192716	0	1.2643	1.15989	0	0	0.203544	0.241612	0.701161	0.433817
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top