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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021876 ID=TCONS_00021876|Name=TCONS_00021876|organism=Clytia hemisphaerica|type=transcript|length=3001bp
CCAAAACTTCTAGAAAGTTCGACTTGCGAACCGCTGTGGGGAAGTgtttc
atgatttttgtgtcATTACGTAATTCGATTGCATTATGGGTATAATGGTA
TCTTTTGCTGAAGCTTTTCAAAACATTAGAACAAAACAGCAAGCGGAGTG
AAGGTGAAAGCATCAAAATAACAATTCGCTGACTTAACAGATATTTTATT
GGAATTCTTTTCCACTAAAAGCAGCTGAACTGGAGTAAAAATTTTTGTCT
AGAGCTATATGTAAATTATATACTTAAAAATTGTCTTATTGGCTGGAGAA
ATCGCGACCATGCATGGTAATCAATTTACAAACGTTTTGACTTTGGCTGC
TGCCCTTTCTATGGCAGGATGGGTTGCCAGGCCAGACGGTAACCAAAATC
ACTTCACAAACTTCAATAACCAAAATTACAATTACCAGAATAGGTTTCAT
CCATATCAACAACCTCAAGCTAATCAATTGAGATCCAACAATCATCTTCA
ACAGCAGcaacaatttcaaaatggcCCTCTTGTCGCTCAAGCAGTTGCAC
CTCAATACAATTTAAATCCTACTCAAAATAATCTTTACCAGTCAAAGGAT
GCAGAGGATACTTTTAGAGCTTACCTTGAACTTCAGGAACTTATTAGCTG
GCAAGAGTCGTACCGTAGAGGGGACTTGATGCCTCAACAAAATACAAATC
AACAATTTGTATTACCTGTTTCGAATCCTGaaagtattgaaaataaattt
tcaagtgGCAACGATGATGGTTATGGCACTTGTAGTAGTGTAGGTTCACC
GGCATCAACCACCCAGCTTGGCAGTGAAGTTGACAATCTTAGCGTTCACA
GTAATTCACCTTCACCTCAACCAAATACTTTCAACTTTGACCAAGATTTA
AATGGACAATCTCAACCATTTCAACAGATCAACAGTCCTTTGGAAGATGG
AGTTTTCGATATTGATGAGATACTCAATGATGAGCAAGGTGCAATGTCCC
CGGTCATGCCATACAATGATGAAATCCCAAAAGGACCTTTTGCAAGCCTC
CTGTCATCACTAGATCAAGACCTTGAATATGCTGATTCTCCTGCTTTAAA
GAACCCCAGTTTTGACTCTTTCCTTACAAAGCCAAGTCCCGAGTACAAAC
CACCATACACCTATTCTCAAAAATATGAAGATCCGTTCAACATAAAGTTT
ACAAATGGGTCACTTCCGGAAGGCTTTTCTCAAGAGACTCTGGTAGATAT
TGGAAGCTTTGATCCTTCAATCTTTGAAGAAAATACTGAATCTCAGGATG
ACATCTTGGACAAAGCCCTGGTTCAATCCCTTCACCAAAAAGAAAACCCA
GCTACCGTGGCAATCAAACAAGAGGAAGATGACAATTATTGGCTTCGGCC
GCAAAGCCCAATGGTGGAACATGATTACTTCAACCGTGATGAAATGAAAC
CATTACAAACAGCCAATCCCGTCACAAAACACCAACCTCAAATAATTCAA
CGACCTGTAACATTCGCACCAAACAGGCGACAACAGCCTTTGCCTATGAC
CCCCACCACCACTCGTATCCTAGGACGGAGGACCTTTGCTCCAAGTCACT
CAGCTACAGCATCAGGTCTCTCTAATTCTAAACCAAGCTCCATCAAACCA
AAAGTCAaacagcaaaaacaaaaatctttatttcttTGGAATGATTTCCA
ATACACTGCCCTTGACCTTGTTGAGATGCCTGTGGAGAAATTCAATGAAG
TGATCAAACAACTTGATGAAGTCAGACAACATATTGCCAAAGATGAACGT
CGAAAAGGCAAAAATAAGTTGGCTGCTCGTAATTGTCGAAAGCGAAAAAT
GGATGTCATTGAAAACTTGGATAATGGTGTCAATGTTTTAGAACAAAAAC
GTCAAGAACTTCTCAAAGAGAGACGGCGAATCTTGGATGAGACACGCCAA
ATcaaattgaaaactgaatggtTGAACGATTATATTTTCAAACATATTAA
AGACTCAAATGGTTTACCATACAATGAAAATGACTATTCTTTGAAATATA
CTGCAGATGGTAATGTATATGTAGTTCCTGTTGGAGTTGGTAATAATGGA
AATTAAAGCAAATAAATGAAATGACATTTAGTTGTATTTTTTAACTTGCA
AGTTTATGAAATCATTTTCTATAGGTGTTTAAAACAGTTAGTTTGAGTAG
GTAAAAAGACATGAAACACACTGTAAATATTGTACAtacgattttttttc
cttttttaaaatttaacgtTTTCTTCTCAAGTTGAGGATTTATTTATATA
TTGAATTTTGTTCACAAACTTGTTTTCCAATAGTTTGTCTTAACGTTGTC
tcgttttttaatatttttcggGATGCCTGAATTTTAATTTCTTAGAAACA
AATATGCTGAAACCCTCTTTCAGTAGATTTAACACCTTTGCACTCACTTA
GCTTTCAGATGGATcgttttgttgacttttttatattttctgagAGAAAC
ACTTATGTTTCAACAATTTCAgcttctttaaaataatttttgtacttTCG
ATAGATTATGTAAAAAAATCCCACTcacttttctcaaatttcttgggtta
aattttttttttcatttttgcctcATAAATCATGACATTTTAATCCGTCA
TATTTGAAATTTAATATAAACATTACAGTCGATTCTTGTACGTTTGAATT
TCACTGaaaatttgtctttttcaaTATATATCACTCCTTTTCGGTCTTTT
ACAACTAACAATGACACGTTCATCCTATTGATAGTTAGCTGATGTGATAA
ACAAGTTTATAAAATTATGTAGATATTTTTTAAGTCATAATTcaatttac
ttctttttttaagcttcaagttttattttcgtTAATGGTATAATTTTGAT
CAATTTGTAAAATTgttacttttttagaaaaaacttcATTCCAAATTTAA
ATgacattcaaaagaaaaattgctaAAAGTGAAATGCCGTGTCGTTTTCT
A Run BLAST on NCBI protein sequence of TCONS_00021876-protein >TCONS_00021876-protein ID=TCONS_00021876-protein|Name=TCONS_00021876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp
MHGNQFTNVLTLAAALSMAGWVARPDGNQNHFTNFNNQNYNYQNRFHPYQ
QPQANQLRSNNHLQQQQQFQNGPLVAQAVAPQYNLNPTQNNLYQSKDAED
TFRAYLELQELISWQESYRRGDLMPQQNTNQQFVLPVSNPESIENKFSSG
NDDGYGTCSSVGSPASTTQLGSEVDNLSVHSNSPSPQPNTFNFDQDLNGQ
SQPFQQINSPLEDGVFDIDEILNDEQGAMSPVMPYNDEIPKGPFASLLSS
LDQDLEYADSPALKNPSFDSFLTKPSPEYKPPYTYSQKYEDPFNIKFTNG
SLPEGFSQETLVDIGSFDPSIFEENTESQDDILDKALVQSLHQKENPATV
AIKQEEDDNYWLRPQSPMVEHDYFNRDEMKPLQTANPVTKHQPQIIQRPV
TFAPNRRQQPLPMTPTTTRILGRRTFAPSHSATASGLSNSKPSSIKPKVK
QQKQKSLFLWNDFQYTALDLVEMPVEKFNEVIKQLDEVRQHIAKDERRKG
KNKLAARNCRKRKMDVIENLDNGVNVLEQKRQELLKERRRILDETRQIKL
KTEWLNDYIFKHIKDSNGLPYNENDYSLKYTADGNVYVVPVGVGNNGN Run BLAST on NCBI transcript from alignment at sc0000396:138333..142545+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021876 ID=TCONS_00021876|Name=TCONS_00021876|organism=Clytia hemisphaerica|type=transcript|length=4213bp|location=Sequence derived from alignment at sc0000396:138333..142545+ (Clytia hemisphaerica)
CCAAAACTTCTAGAAAGTTCGACTTGCGAACCGCTGTGGGGAAGTgtttc
atgatttttgtgtcATTACGTAATTCGATTGCATTATGGGTATAATGGTA
TCTTTTGCTGAAGCTTTTCAAAACATTAGAACAAAACAGCAAGCGGAGTG
AAGGTGAAAGCATCAAAATAACAATTCGCTGACTTAACAGATATTTTATT
GGAATTCTTTTCCACTAAAAGCAGCTGAACTGGAGTAAAAATTTTTGTCT
AGAGCTATATGTAAATTATATACTTAAAAATTGTCTTATTGGCTGGAGAA
ATCGCGACCATGCATGGTAATCAATTTACAAACGTTTTGACTTTGGCTGC
TGCCCTTTCTATGGCAGGATGGGTTGCCAGGCCAGACGGTAACCAAAATC
ACTTCACAAACTTCAATAACCAAAATTACAATTACCAGAATAGGTTTCAT
CCATATCAACAACCTCAAGCTAATCAATTGAGATCCAACAATCATCTTCA
ACAGCAGcaacaatttcaaaatggcCCTCTTGTCGCTCAAGCAGTTGCAC
CTCAATACAATTTAAATCCTACTCAAAATAATCTTTACCAGTCAAAGGAT
GCAGAGGATACTTTTAGAGCTTACCTTGAACTTCAGGAACTTATTAGCTG
GCAAGAGTCGTACCGTAGAGGGGACTTGATGCCTCAACAAAATACAAATC
AACAATTTGTATTACCTGTTTCGAATCCTGaaagtattgaaaataaattt
tcaagtgGCAACGATGATGGTTATGGCACTTGTAGTAGTGTAGGTTCACC
GGCATCAACCACCCAGCTTGGCAGTGAAGTTGACAATCTTAGCGTTCACA
GTAATTCACCTTCACCTCAACCAAATACTTTCAACTTTGACCAAGATTTA
AATGGACAATCTCAACCATTTCAACAGATCAACAGTCCTTTGGAAGATGG
AGTTTTCGATATTGATGAGATACTCAATGATGAGCAAGGTGCAATGTCCC
CGGTCATGCCATACAATGATGAAATCCCAAAAGGACCTTTTGCAAGCCTC
CTGTCATCACTAGATCAAGACCTTGAATATGCTGATTCTCCTGCTTTAAA
GAACCCCAGTTTTGACTCTTTCCTTACAAAGCCAAGTCCCGAGTACAAAC
CACCATACACCTATTCTCAAAAATATGAAGATCCGTTCAACATAAAGTTT
ACAAATGGGTCACTTCCGGAAGGCTTTTCTCAAGAGACTCTGGTAGATAT
TGGAAGCTTTGATCCTTCAATCTTTGAAGAAAATACTGAATCTCAGGATG
ACATCTTGGACAAAGCCCTGGTTCAATCCCTTCACCAAAAAGAAAACCCA
GCTACCGGTAAGATTTTATTCATGAAAGCCATATCATTTACATTTTCAAC
AAATTCGTTTTAGAAATCactatataaaatgaaaatataagttAATAAAg
ggaaaatatcaaatatcaaatatctgaaaaaaatgcaacaatttcaattt
tttcaagtaagtTTTTAGATTTCCTTTTTTAAcacctttttttaaaagaa
gaaatttaagTGATTGGAATTTTTTGGTGAAGAGGCTAACTAACACGTAA
TTCGGTGAATCAagaaaatttgttaattttgaTGTAAACTTCTTGGTTTT
TTGTAAGTCTTCCagctaaaaatggggtttttcaGGAATAAATAAGGATC
AAATTGAAAGATAattaaatttggtaaaaatagtCATTTAGGAAAACGCa
aaggtctattgaataattagttattcaaaagacagTGGCGTTCTCCCAAA
CGACTATTGATTTTGATGTATGATTAGTAGATTGAAATTTGGTGGGAAGT
AATTTTAGTAAAATTCTTTCcagtaaaaaaatttcttctctttttaaGAT
TCAATCAAATTGTAATTATTCAACTTTCGGTTAGAGTTGCTCTTAAAAAG
GAAAGTCtcatttaacttttttgcaaagTCATCGCTCAAGCTAATTTTAA
CCACATACGGACATCCGGTGCAAGCCTTTTAGCGATGCTCTTTATCACTT
CTGAATTCAATATCGGGAACCCCATTTATAGCCTGGAAATTTCCTCCCTA
TAATTAtccattttattttctttgttttgtgaGAGAGGTAAAAAGTGCTG
CATCATCCCTCTCTTAGTTGTCATTGGTATTCTTCCTTTGACTTAATGAC
CCATTAGTAATCGAACACTCGTGATATATTTATCACtcagcaaaaaattt
atttcgacTTTTTTAGCCCAAGGGTAACATGCTTAACTATTTCTTATTAA
ATAATTGGGACATACCATATTTGAGATGTCTGTGGCAAGGGGACTTGAGA
AATATTATGTCAGGAGACAATTTTCGACTGCCATTTAAAAATGAAGAGTT
TGATATTGACTCAGTCACCTCAGTGGTCAGTAACAATCAATATGGTGTCC
AAACTTTCCATTACAATGAAGAATGTATGTATGATAATGCCAAATGATTT
ATATATTTCTATAATCAATTCAGTAAGTTTGTTTaactataatttgtttt
tttttacctttttcttcAGTGGCAATCAAACAAGAGGAAGATGACAATTA
TTGGCTTCGGCCGCAAAGCCCAATGGTGGAACATGATTACTTCAACCGTG
ATGAAATGAAACCATTACAAACAGCCAATCCCGTCACAAAACACCAACCT
CAAATAATTCAACGACCTGTAACATTCGCACCAAACAGGCGACAACAGCC
TTTGCCTATGACCCCCACCACCACTCGTATCCTAGGACGGAGGACCTTTG
CTCCAAGTCACTCAGCTACAGCATCAGGTCTCTCTAATTCTAAACCAAGC
TCCATCAAACCAAAAGTCAaacagcaaaaacaaaaatctttatttcttTG
GAATGATTTCCAATACACTGCCCTTGACCTTGTTGAGATGCCTGTGGAGA
AATTCAATGAAGTGATCAAACAACTTGATGAAGTCAGACAACATATTGCC
AAAGATGAACGTCGAAAAGGCAAAAATAAGTTGGCTGCTCGTAATTGTCG
AAAGCGAAAAATGGATGTCATTGAAAACTTGGATAATGGTGTCAATGTTT
TAGAACAAAAACGTCAAGAACTTCTCAAAGAGAGACGGCGAATCTTGGAT
GAGACACGCCAAATcaaattgaaaactgaatggtTGAACGATTATATTTT
CAAACATATTAAAGACTCAAATGGTTTACCATACAATGAAAATGACTATT
CTTTGAAATATACTGCAGATGGTAATGTATATGTAGTTCCTGTTGGAGTT
GGTAATAATGGAAATTAAAGCAAATAAATGAAATGACATTTAGTTGTATT
TTTTAACTTGCAAGTTTATGAAATCATTTTCTATAGGTGTTTAAAACAGT
TAGTTTGAGTAGGTAAAAAGACATGAAACACACTGTAAATATTGTACAta
cgattttttttccttttttaaaatttaacgtTTTCTTCTCAAGTTGAGGA
TTTATTTATATATTGAATTTTGTTCACAAACTTGTTTTCCAATAGTTTGT
CTTAACGTTGTCtcgttttttaatatttttcggGATGCCTGAATTTTAAT
TTCTTAGAAACAAATATGCTGAAACCCTCTTTCAGTAGATTTAACACCTT
TGCACTCACTTAGCTTTCAGATGGATcgttttgttgacttttttatattt
tctgagAGAAACACTTATGTTTCAACAATTTCAgcttctttaaaataatt
tttgtacttTCGATAGATTATGTAAAAAAATCCCACTcacttttctcaaa
tttcttgggttaaattttttttttcatttttgcctcATAAATCATGACAT
TTTAATCCGTCATATTTGAAATTTAATATAAACATTACAGTCGATTCTTG
TACGTTTGAATTTCACTGaaaatttgtctttttcaaTATATATCACTCCT
TTTCGGTCTTTTACAACTAACAATGACACGTTCATCCTATTGATAGTTAG
CTGATGTGATAAACAAGTTTATAAAATTATGTAGATATTTTTTAAGTCAT
AATTcaatttacttctttttttaagcttcaagttttattttcgtTAATGG
TATAATTTTGATCAATTTGTAAAATTgttacttttttagaaaaaacttcA
TTCCAAATTTAAATgacattcaaaagaaaaattgctaAAAGTGAAATGCC
GTGTCGTTTTCTA Coding sequence (CDS) from alignment at sc0000396:138333..142545+ >TCONS_00021876 ID=TCONS_00021876|Name=TCONS_00021876|organism=Clytia hemisphaerica|type=CDS|length=3594bp|location=Sequence derived from alignment at sc0000396:138333..142545+ (Clytia hemisphaerica)
ATGCATGGTAATCAATTTACAAACGTTTTGACTTTGGCTGCTGCCCTTTC
TATGGCAGGATGGGTTGCCAGGCCAGACGGTAACCAAAATCACTTCACAA
ACTTCAATAACCAAAATTACAATTACCAGAATAGGTTTCATCCATATCAA
CAACCTCAAGCTAATCAATTGAGATCCAACAATCATCTTCAACAGCAGca
acaatttcaaaatggcCCTCTTGTCGCTCAAGCAGTTGCACCTCAATACA
ATTTAAATCCTACTCAAAATAATCTTTACCAGTCAAAGGATGCAGAGGAT
ACTTTTAGAGCTTACCTTGAACTTCAGGAACTTATTAGCTGGCAAGAGTC
GTACCGTAGAGGGGACTTGATGCCTCAACAAAATACAAATCAACAATTTG
TATTACCTGTTTCGAATCCTGaaagtattgaaaataaattttcaagtgGC
AACGATGATGGTTATGGCACTTGTAGTAGTGTAGGTTCACCGGCATCAAC
CACCCAGCTTGGCAGTGAAGTTGACAATCTTAGCGTTCACAGTAATTCAC
CTTCACCTCAACCAAATACTTTCAACTTTGACCAAGATTTAAATGGACAA
TCTCAACCATTTCAACAGATCAACAGTCCTTTGGAAGATGGAGTTTTCGA
TATTGATGAGATACTCAATGATGAGCAAGGTGCAATGTCCCCGGTCATGC
CATACAATGATGAAATCCCAAAAGGACCTTTTGCAAGCCTCCTGTCATCA
CTAGATCAAGACCTTGAATATGCTGATTCTCCTGCTTTAAAGAACCCCAG
TTTTGACTCTTTCCTTACAAAGCCAAGTCCCGAGTACAAACCACCATACA
CCTATTCTCAAAAATATGAAGATCCGTTCAACATAAAGTTTACAAATGGG
TCACTTCCGGAAGGCTTTTCTCAAGAGACTCTGGTAGATATTGGAAGCTT
TGATCCTTCAATCTTTGAAGAAAATACTGAATCTCAGGATGACATCTTGG
ACAAAGCCCTGGTTCAATCCCTTCACCAAAAAGAAAACCCAGCTACCGTG
GCAATCAAACAAGAGGAAGATGACAATTATTGGCTTCGGCCGCAAAGCCC
AATGGTGGAACATGATTACTTCAACCGTGATGAAATGAAACCATTACAAA
CAGCCAATCCCGTCACAAAACACCAACCTCAAATAATTCAACGACCTGTA
ACATTCGCACCAAACAGGCGACAACAGCCTTTGCCTATGACCCCCACCAC
CACTCGTATCCTAGGACGGAGGACCTTTGCTCCAAGTCACTCAGCTACAG
CATCAGGTCTCTCTAATTCTAAACCAAGCTCCATCAAACCAAAAGTCAaa
cagcaaaaacaaaaatctttatttcttTGGAATGATTTCCAATACACTGC
CCTTGACCTTGTTGAGATGCCTGTGGAGAAATTCAATGAAGTGATCAAAC
AACTTGATGAAGTCAGACAACATATTGCCAAAGATGAACGTCGAAAAGGC
AAAAATAAGTTGGCTGCTCGTAATTGTCGAAAGCGAAAAATGGATGTCAT
TGAAAACTTGGATAATGGTGTCAATGTTTTAGAACAAAAACGTCAAGAAC
TTCTCAAAGAGAGACGGCGAATCTTGGATGAGACACGCCAAATcaaattg
aaaactgaatggtTGAACGATTATATTTTCAAACATATTAAAGACTCAAA
TGGTTTACCATACAATGAAAATGACTATTCTTTGAAATATACTGCAGATG
GTAATGTATATGTAGTTCCTGTTGGAGTTGGTAATAATGGAAATTAAATG
CATGGTAATCAATTTACAAACGTTTTGACTTTGGCTGCTGCCCTTTCTAT
GGCAGGATGGGTTGCCAGGCCAGACGGTAACCAAAATCACTTCACAAACT
TCAATAACCAAAATTACAATTACCAGAATAGGTTTCATCCATATCAACAA
CCTCAAGCTAATCAATTGAGATCCAACAATCATCTTCAACAGCAGcaaca
atttcaaaatggcCCTCTTGTCGCTCAAGCAGTTGCACCTCAATACAATT
TAAATCCTACTCAAAATAATCTTTACCAGTCAAAGGATGCAGAGGATACT
TTTAGAGCTTACCTTGAACTTCAGGAACTTATTAGCTGGCAAGAGTCGTA
CCGTAGAGGGGACTTGATGCCTCAACAAAATACAAATCAACAATTTGTAT
TACCTGTTTCGAATCCTGaaagtattgaaaataaattttcaagtgGCAAC
GATGATGGTTATGGCACTTGTAGTAGTGTAGGTTCACCGGCATCAACCAC
CCAGCTTGGCAGTGAAGTTGACAATCTTAGCGTTCACAGTAATTCACCTT
CACCTCAACCAAATACTTTCAACTTTGACCAAGATTTAAATGGACAATCT
CAACCATTTCAACAGATCAACAGTCCTTTGGAAGATGGAGTTTTCGATAT
TGATGAGATACTCAATGATGAGCAAGGTGCAATGTCCCCGGTCATGCCAT
ACAATGATGAAATCCCAAAAGGACCTTTTGCAAGCCTCCTGTCATCACTA
GATCAAGACCTTGAATATGCTGATTCTCCTGCTTTAAAGAACCCCAGTTT
TGACTCTTTCCTTACAAAGCCAAGTCCCGAGTACAAACCACCATACACCT
ATTCTCAAAAATATGAAGATCCGTTCAACATAAAGTTTACAAATGGGTCA
CTTCCGGAAGGCTTTTCTCAAGAGACTCTGGTAGATATTGGAAGCTTTGA
TCCTTCAATCTTTGAAGAAAATACTGAATCTCAGGATGACATCTTGGACA
AAGCCCTGGTTCAATCCCTTCACCAAAAAGAAAACCCAGCTACCGTGGCA
ATCAAACAAGAGGAAGATGACAATTATTGGCTTCGGCCGCAAAGCCCAAT
GGTGGAACATGATTACTTCAACCGTGATGAAATGAAACCATTACAAACAG
CCAATCCCGTCACAAAACACCAACCTCAAATAATTCAACGACCTGTAACA
TTCGCACCAAACAGGCGACAACAGCCTTTGCCTATGACCCCCACCACCAC
TCGTATCCTAGGACGGAGGACCTTTGCTCCAAGTCACTCAGCTACAGCAT
CAGGTCTCTCTAATTCTAAACCAAGCTCCATCAAACCAAAAGTCAaacag
caaaaacaaaaatctttatttcttTGGAATGATTTCCAATACACTGCCCT
TGACCTTGTTGAGATGCCTGTGGAGAAATTCAATGAAGTGATCAAACAAC
TTGATGAAGTCAGACAACATATTGCCAAAGATGAACGTCGAAAAGGCAAA
AATAAGTTGGCTGCTCGTAATTGTCGAAAGCGAAAAATGGATGTCATTGA
AAACTTGGATAATGGTGTCAATGTTTTAGAACAAAAACGTCAAGAACTTC
TCAAAGAGAGACGGCGAATCTTGGATGAGACACGCCAAATcaaattgaaa
actgaatggtTGAACGATTATATTTTCAAACATATTAAAGACTCAAATGG
TTTACCATACAATGAAAATGACTATTCTTTGAAATATACTGCAGATGGTA
ATGTATATGTAGTTCCTGTTGGAGTTGGTAATAATGGAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021876-exon-sc0000396-1491911889:138333..139689 | TCONS_00021876-exon-sc0000396-1491911889:138333..139689 | Clytia hemisphaerica | exon |
| TCONS_00021876-exon-sc0000396-1510915933:138333..139689 | TCONS_00021876-exon-sc0000396-1510915933:138333..139689 | Clytia hemisphaerica | exon |
| TCONS_00021876-exon-sc0000396-1575043694:138333..139689 | TCONS_00021876-exon-sc0000396-1575043694:138333..139689 | Clytia hemisphaerica | exon |
| TCONS_00021876-exon-sc0000396-1491911889:140902..142545 | TCONS_00021876-exon-sc0000396-1491911889:140902..142545 | Clytia hemisphaerica | exon |
| TCONS_00021876-exon-sc0000396-1510915933:140902..142545 | TCONS_00021876-exon-sc0000396-1510915933:140902..142545 | Clytia hemisphaerica | exon |
| TCONS_00021876-exon-sc0000396-1575043694:140902..142545 | TCONS_00021876-exon-sc0000396-1575043694:140902..142545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:138333..142545 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | DNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00021876 vs. Swiss-Prot (Human)
Match: NF2L1 (Nuclear factor erythroid 2-related factor 1 OS=Homo sapiens GN=NFE2L1 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.129e-22 Identity = 50/121 (41.32%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 1702 YTALDLVEMPVEKFNEVIK--QLDEVRQHIAKDERRKGKNKLAARNCRKRKMDVIENLDNGVNVLEQKRQELLKERRRILDETRQIKLKTEWLNDYIFKHIKDSNGLPYNENDYSLKYTAD 2058
+T ++ +PVE+FNE++ QL E + + +D RR+GKNK+AA+NCRKRK+D I NL+ V L++ + LL+E+ L RQ+K K + L +F ++D NG PY+ + Y+L+Y D
Sbjct: 625 FTNDKIINLPVEEFNELLSKYQLSEAQLSLIRDIRRRGKNKMAAQNCRKRKLDTILNLERDVEDLQRDKARLLREKVEFLRSLRQMKQKVQSLYQEVFGRLRDENGRPYSPSQYALQYAGD 745
The following BLAST results are available for this feature:
|
