TCONS_00021833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021833
Unique NameTCONS_00021833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021833 ID=TCONS_00021833|Name=TCONS_00021833|organism=Clytia hemisphaerica|type=transcript|length=1967bp
agatttttgaattgataaatatcaaaataacaTCAATATGCTTGGAGATG
AAGACGAGACATCAAGTTTACAAGAAGAGGAAATGCTTCGAGGTGGAGGG
GACTTAGATACACATTCTGATCTTGATAGAAACTCGACCAACCTTTTACT
GAGAGCGAAACAGTTTTCAACCGATTCTATGGCAAGTTATGGATCCATAA
ACAGCGCGCATTATGATAATATTAAACCTGGATTAAAACCTGGTGTCTCT
TTTGACAGTATCAGCGATAACAAAATCGCTAATATAAAGAAGATGTTTTT
CGGACGGCGAGTTGACTCTTTAACCGAACCAGGCGAGTTTGAGGACGACC
ATTTAATAACTCGCCAGGATAAAGCAAACTGCACGCTCATACTTTTCGCT
TTGAAACATTCaatgaaaatatttcttgttaCTTCGCCTACCATTTTGAT
TGCATGCTGTTTTGTGATTGGATTGAGTTATATACCATGGACGGACGTAC
CTTCATGCAATAACAACGCAACACAGCCATGTACGCACTACCGAAAAGAG
TATTTGGTCTACTTCAACACCTATCTCAGATTGaTTCTCCTCTCAACCAC
TTCCGTCTTTATCACCAATATCGCTTTAGACGGCAgccgacaaattttca
aaaacattctcTACGTGAGCATCCCACTTGTCACCATAGCGACAGCTTTA
ATACCAGGCCTCTTGAAATACAATGACGTCATACTATACTATTACGTAGA
CATTTTCTTATGTGGATTGTTCTTTTTGGTTGGGATGGTGGCTTCGGTTT
TTtgtttatcgaaaaatttagaaGTTCAAATCACAAGGAAAcgaattttt
caagttttggtAATTCCGAGTATAATCGCTGTACTTGGTGTGAATGTTCT
AGACGCAGTTGTCAATAAAGaatatcaaatattttcaaagggtTCCATTG
GTCAATACGTGGTTAGGCTTGTTATTTATCCGATCACAGTCGACATACTA
TTGGCTATCACTGAAACGAACGTTCAAAAAATCCCCTCCAATCACATCAA
TAATCCTAGCCACGTGGTTTATTTCTATCAAGTCGCTTTCACCATTATTG
GTCGTTACATGACAACTATATCAGGAGGCATTATGGATATTTTCATAATG
GCAGCCTCAGTAGCGGGAAAGGATTTCATTCTACATCGAATGGGTCGTAT
CCGATGTTGGTTGGCATTTCATACACGAACACTCCTAGTAAAATTCTATC
CACCTTATGCAAATACAGTTGATTATGAGACTTTCAAAGACTGGTTTTAC
TCTAAAGATTTCACATACTTCAAAGCGAATACGTTAAACAGTGACTTTGC
AGTTGAACTAACAGGTGTTATCATCGTACCAGCCATCTTGGCAACCTCCA
ACAAACATTCCTCACTATATTCTTTCCAAGATAAAAGTTTCTTAAACTCT
GATGGAACACACAACTACATTTACATCTTACAGCAAGAAGCAATTCAAAT
CAGCCTCGTTTTCATATCGATCATCATAGTGACCTACATTGAAGCCAAAT
TCAATCGAGTCAACCTCACAGCAGTGGTCAAACGAAAAAGTTACGCACAA
TACATTTCAGAGACATTGATTTATTTATGGGGCATTTTGCTCTTTTTATC
ATCCGTTAAAACGACACCGAATTATTTACAGTGCGATGATATGACAGTGT
GCAATTGTGATTGGCAAATAGATGCTACAAAGTATGGGTGCTAAGAAtat
ttcttccttttcttcacGTACGAAATCAAGTTACAGACTATGCCAAAATA
CTCGGCACCAAAtacatcttcattttttaattcatgatattcaactcaaa
aacatcttttcaacgagcacaaaactgCTATCTAATCCGTATTCTATCAG
AATTTAAACCTATTTTGTTGtcactgcagattatattgaggcAGAATATA
CTATATCCCAATTCCAT
Run BLAST on NCBI

transcript from alignment at sc0000395:187751..191561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021833 ID=TCONS_00021833|Name=TCONS_00021833|organism=Clytia hemisphaerica|type=transcript|length=3811bp|location=Sequence derived from alignment at sc0000395:187751..191561- (Clytia hemisphaerica)
AGATTTTTGAATTGATAAATATCAAAATAACATCAATATGCTTGGAGATG
AAGACGAGACATCAAGTTTACAAGAAGAGGAAATGCTTCGAGGTGGAGGG
GACTTAGATACACATTCTGATCTTGATAGAAACTCGACCAACCTTTTACT
GAGAGCGAAACAGTTTTCAACCGATTCTATGGCAAGTTATGGATCCATAA
ACAGCGCGCATTATGATAATATTAAACCTGGATTAAAACCTGGTGTCTCT
TTTGACAGTATCAGCGATAACAAAATCGCTAATATAAAGAAGATGTTTTT
CGGACGGCGAGTTGACTCTTTAACCGAACCAGGCGAGTTTGAGGACGACC
ATTTAATAACTCGCCAGGATAAAGCAAACTGCACGCTCATACTTTTCGCT
TTGAAACATTCAATGAAAATATTTCTTGTTACTTCGCCTACCATTTTGAT
TGCATGCTGTTTTGTGATTGGATTGAGTTATATACCATGGACGGACGTAC
CTTCATGCAATAACAACGCAACACAGCCATGTACGCACTACCGAAAAGAG
TATTTGGTCTACTTCAACACCTATCTCAGATTGGTAAGAAACATTTACTA
AGCCTCTAAGCAATAAAGTGAAAAGGCAAACCTCGTGTGCAGGGTTTGAT
TTCAAGATGACAATTTTTCGCTTTAAGCCATTTGACTTTATAATTCATTC
CCTATAAGCCCTGGTATTACAAGAAGAAACATCCACTCCCCGTCATTCGT
TCCTGTGAACATAATTCCCGAATTCATCATCATTCTTAAAATTGACCTTT
TTCTCTTACGAGTGAAAAACCTTTCTACTTATCGATACTTATCTTATGAT
ATGATAGTGGACGAAACTACATTCAACACTCTTTAGCTCGACGTTCTACT
ATACGACACGCCCCATTCATCATTCGATATTATTGAAAGTCACCGTCTAT
AAGAAACTCTCACTAGCGACGCTCTACTATTCGATATGGAATTCCAATTA
TCCTTAGAAATCGAATAAGAGAGCGGCAAGTGTATACAAAGAACCTGTCA
ATGGGCTCCTCCAGAAAAAAACTTGAATATGGGGGGGGTGGATGATATAA
CATTTTTAGGAAATTTCCCCCCCCCCCCGGACATTGATAATTTTGACCCC
CGGACGGATCTCGCCCCCGGACAAGCATCAGTTGACTCCCCACATTCAAA
ATCACCCCTAATCACAGCAAAATTTACAGATTTTTCACTCCCCTCCCCTC
GACAACATATCCAATATATCCTCCACCCATAGATTTATAAAGCCTGAAGG
GCTAGATGGAGTGCTTTAAGCTCTTCCAAGCAAAAAAAAAGTGAATATCG
AAAAAAATATTGCTGCTATTGTTTTCGAAAACCCTAAATTCTATTGTAAT
GTCACGTAACTTAGGTAGGATTTCCTACCTAACCTACCTCCTTCCTACCT
ACCTAACCTCGGCACAATTTTCAGCAAAAGCACGATATCTAGCCCTTCGG
GCTTTATAAATCTATGCCTCCACCCTCATGTACAAAAACTTTCTGGAAGA
GCTCAATCCTGAAAAATATTTCTCTTTTTCATTTCTTTTCAGATTCTCCT
CTCAACCACTTCCGTCTTCATCACCAATATCGCTTTAGACGGCAGCCGAC
AAATTTTCAAAAACATTCTCTACGTCAGCATCCCACTTACNCCCTAATCA
CAGCAAAATTTACAGATTTTTCACTCCCCTCCCCTCGACAACATATCCAA
TATATCCTCCACCCATAGATTTATAAAGCCTGAAGGGCTAGATGGAGTGC
TTTAAGCTCTTCCAAGCAAAAAAAAAGTGAATATCGAAAAAAATATTGCT
GCTATTGTTTTCGAAAACCCTAAATTCTATTGTAATGTCACGTAACTTAG
GTAGGATTTCCTACCTAACCTACCTCCTTCCTACCTACCTAACCTCGGCA
CAATTTTCAGCAAAAGCACGATATCTAGCCCTTCGGGCTTTATAAATCTA
TGCCTCCACCCTCATGTACAAAAACTTTCTGGAAGAGCTCAATCCTGAAA
AATATTTCTCTTTTTCATTTCTTTTCAGATTCTCCTCTCAACCACTTCCG
TCTTTATCACCAATATCGCTTTAGACGGCAGCCGACAAATTTTCAAAAAC
ATTCTCTACGTGAGCATCCCACTTGTCACCATAGCGACAGCTTTAATACC
AGGCCTCTTGAAATACAATGACGTCATACTATACTATTACGTAGACATTT
TCTTATGTGGATTGTTCTTTTTGGTTGGGATGGTGGCTTCGGTTTTTTGT
TTATCGAAAAATTTAGAAGTTCAAATCACAAGGAAACGAATTTTTCAAGT
TTTGGTAATTCCGAGTATAATCGCTGTACTTGGTGTGAATGTTCTAGACG
CAGTTGTCAATAAAGAATATCAAATATTTTCAAAGGGTTCCATTGGTCAA
TACGTGGTTAGGCTTGTTATTTATCCGATCACAGTCGACATACTATTGGC
TATCACTGAAACGAACGTTCAAAAAATCCCCTCCAATCACATCAATAATC
CTAGCCACGTGGTTTATTTCTATCAAGTCGCTTTCACCATTATTGGTCGT
TACATGACAACTATATCAGGAGGCATTATGGATATTTTCATAATGGCAGC
CTCAGTAGCGGGAAAGGATTTCATTCTACATCGAATGGGTCGTATCCGAT
GTTGGTTGGCATTTCATACACGAACACTCCTAGTAAAATTCTATCCACCT
TATGCAAATACAGTTGATTATGAGACTTTCAAAGACTGGTTTTACTCTAA
AGATTTCACATACTTCAAAGCGAATACGTTAAACAGTGACTTTGCAGTTG
AACTAACAGGTGAGTAATGATCCTTCAAAGATCTCATAACTTGTTCTGAT
AGAACTTAGACTGAAATTTGTGTGACGTCAGACAAGAACCTTTGTAAAAT
TGTGGACTGACAAAAAATGTGAGTAATTCTGCAGAAAACTCAAATGACAA
GTTTTAGACACTCTATAATCCTTTTCAAAAATTAGTTCCATTACACTCGA
ATTTTCATGTCTTGCAAAAGAATGCATAGGAGTACATTCGCAAGACCTTA
AGAAAATCACTTCAAAATGTATGAACCTTTCTTCCCAATACTAAGTTTTT
TTGCTTTCTCAAGCATTCCTCAGTTGGTTTTCAAAATGTATCTCGATATT
TATTCCAGGTGTTATCATCGTACCAGCCATCTTGGCAACCTCCAACAAAC
ATTCCTCACTATATTCTTTCCAAGATAAAAGTTTCTTAAACTCTGATGGA
ACACACAACTACATTTACATCTTACAGCAAGAAGCAATTCAAATCAGCCT
CGTTTTCATATCGATCATCATAGTGACCTACATTGAAGCCAAATTCAATC
GAGTCAACCTCACAGCAGTGGTCAAACGAAAAAGTTACGCACAATACATT
TCAGAGACATTGATTTATTTATGGGGCATTTTGCTCTTTTTATCATCCGT
TAAAACGACACCGAATTATTTACAGTGCGATGATATGACAGTGTGCAATT
GTGATTGGCAAATAGATGCTACAAAGTATGGGTGCTAAGAATATTTCTTC
CTTTTCTTCACGTACGAAATCAAGTTACAGACTATGCCAAAATACTCGGC
ACCAAATACATCTTCATTTTTTAATTCATGATATTCAACTCAAAAACATC
TTTTCAACGAGCACAAAACTGCTATCTAATCCGTATTCTATCAGAATTTA
AACCTATTTTGTTGTCACTGCAGATTATATTGAGGCAGAATATACTATAT
CCCAATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012253XLOC_012253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021833-exon-sc0000395-1575043694:190979..191561TCONS_00021833-exon-sc0000395-1575043694:190979..191561Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1575043694:188703..189483TCONS_00021833-exon-sc0000395-1575043694:188703..189483Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1575043694:187751..188353TCONS_00021833-exon-sc0000395-1575043694:187751..188353Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1510915933:190979..191561TCONS_00021833-exon-sc0000395-1510915933:190979..191561Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1510915933:188703..189483TCONS_00021833-exon-sc0000395-1510915933:188703..189483Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1510915933:187751..188353TCONS_00021833-exon-sc0000395-1510915933:187751..188353Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1491911889:190979..191561TCONS_00021833-exon-sc0000395-1491911889:190979..191561Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1491911889:188703..189483TCONS_00021833-exon-sc0000395-1491911889:188703..189483Clytia hemisphaericaexon
TCONS_00021833-exon-sc0000395-1491911889:187751..188353TCONS_00021833-exon-sc0000395-1491911889:187751..188353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000395supercontigsc0000395:187751..191561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.249397	0.173744	0	1.08585	0.377542	1.5865	1.98548	0	0.724261	0.91947	0.437555	0.460643	0.507337	0	0	0	0	0	0	0.0989097	0.0856549	0.200537	0.19195	0	0.0490127	0.126247	0.187037	0.0340636	0.0304281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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