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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021810 ID=TCONS_00021810|Name=TCONS_00021810|organism=Clytia hemisphaerica|type=transcript|length=2493bp
TAATGTCAAGTGAGACAAATCAGTGACGTCATCGACACTTAACATAACTC
GCCAAAAGATACTTATTAACTCGCCAccttgaaattttcttcttgaaaac
aataacAAGATTTAAGtagaaattctaaaaatatcTTTCACAAATTAATA
CCATTGGTCGGTAAGCAACTGCCGGTATAAAAGCATTAACTGCAATGAAT
TAAGGTGTTACACAAGATGGGGTAATGAACGCGAGAGGGTCGGTTATGTA
AAACAAATGTCAAAAGAACTTATGAaagaaatctaatttttttcaatcga
GGAATTTTGTGATCAGTTTATTTTCCGTGGATAGAGTTGAGtttGGGTAT
AAACGGAGATAACGCTTTAACCTCTGCACATCTTGAGCATTCACCACATT
TAGTAAAGTTCAAAAAGTCAGATTCAAAAGCTGATTAAGCCTTCAAATGA
AGTATGCTATCAAATCTAAAGCAATTTTACGATCGATGAAATAACAAGGC
TGAAAACTGGACTATTGGGTTTTCTTGTTCTGTAATCAtgttcgaaatat
attgagattttagtgtgttttaacgttttttgagaattttgtctgaaata
ttttgtccatgattgtggTATAATTTTCAGAATCATTGCATATGAATGCA
AAAGTAATGACTTTATCAAGCTTGATTGGTTTTAGATTATAGaaacacaa
taaaaaaaaacaagtcagCAAACAACAGCAACGGAATCTTCAACAAAATc
caaaacaacattttacagACTTGCCATCATCAACAACAGTTACGTGTAAC
CATGGTAATCAATACGTCGTCATCCAACACCACAAACACTGGCATAATAC
CCAACAATGAGTGGACATTTTTTTCACTACAAATCACcggcttttttacg
ttttttgttggATTTCCTACCAATCTGATCATCATATACTTAGTCTTACG
TCGACGTCGATTACGTAATCCGACAAATTATTTTGTATGTAGTTTAGCCG
TCGCCGATGTTTTAGTGTTAATTTGGTTGCTTATTTGGGTCCTTGGCATA
CATAACATCTTATCAACAGTCGAAGTAAAGAAGTTCATTATCCCCACCAT
AGACATTTTCCTAGGCGTCGCATCGATTATTAACGTAGCTTGCGTAAGCG
CAGATCGCGGTATCGCCGTTGTATATCCGTTACGTTACGAATTCATATTA
ACAAAACGTCGCTCCGTGTATGCTATCTTGTTCGTCTGGTGTTATGCATT
CGCGTTACTGATTGCTGCGTTTTTACGTATACGCTATCAAAATGAGACTT
TTTACGCCGTGATTTTGTACGTGGGATTCATGAGTTATTTTGTTCCCGTA
ACCATCATTGTTGTGTCTTATTCCATCATATTTTTGGTCATCGTTCGAAA
GCTCAAAAGTATAAGGGATCTGGAACGAGTATCAAATGCAGTAGCCAATC
AAAACGGagaacaaaatgataaaaagaaacGACGGCGTCGGAAATTATTA
CGTGAGTTAAAAGTGACGGCGAACATATTACTTATCGTTTTACCGTTTAC
GACAGGTTGGTCGTATTTTATCGGTACTCACATTTACGAGCATGCGTATC
AGACGATAATTAAGAACGATGCTCATAATATCGCTATGATCGTAATCCCC
TGGTTACTGTCAGGATTGAACCCTATAGTATACTTGTTACTCAATCGGTC
ATTACGTAAAGCCATGGTTGAAACAGTTAAGAAACTTTGTCATGATAGTG
CTTCGAGTATGGAAGATGGCAGTTTTTTCTCTACTTTTTCAAGACGTGCT
TCAAGTGCAATACGCCGTGCTTCCGCTGGCTTCGAAGAAGGTGGATTGTT
ACACGTTCCGAAATTCCTCAACAGGAGGAGGGACTCACATACTTCAGCCA
GCACTCCATCCAGGAGCTCTGTTGACGTCACGAAAGAATTTAACATGAAT
GCGCATGCGCTTTATGACGTAGAAGAAAGTGCTGACAAAGAAAAGAATTC
TTCGGTCGTTTAGTGTAAATAGACTCTAAACTTAAAATTGAGCAAGACCG
ACATTCGTACAGGCGCATTCACTTTTCCGACTCCGGAAAGACTTGTATTT
TTAAGTGCGtcttttttaaagacttttattCATAAACATCTGCACTGAAA
TTACTTATTGAACATTCTGAAAACTGAATCGAACGATTTTAGTTTTGTAA
CTtgtaaaaacttttctttgagTAGGGAAaccttttatttttcatgaacC
TTTCTGGCGCCCGCTTTAACGAGGGCTTCGGTTTGCTTGTTtatattttt
gaccaaaatctGGACTTAGAGAAACTTGTATATATTCCAGATTTGGTGCT
TAGGATTTCTTATACAACTACCTCGACTGTACATAGTAAACATTTTAACA
GTTTCACTGTGATATTTTTTAACATGAAACTAAAGATTCGCCACAAATAC
AACGTTTTTACCCCTTTGTCACTTTTAAGAAAATGCTTCACCC Run BLAST on NCBI protein sequence of TCONS_00021810-protein >TCONS_00021810-protein ID=TCONS_00021810-protein|Name=TCONS_00021810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MVINTSSSNTTNTGIIPNNEWTFFSLQITGFFTFFVGFPTNLIIIYLVLR
RRRLRNPTNYFVCSLAVADVLVLIWLLIWVLGIHNILSTVEVKKFIIPTI
DIFLGVASIINVACVSADRGIAVVYPLRYEFILTKRRSVYAILFVWCYAF
ALLIAAFLRIRYQNETFYAVILYVGFMSYFVPVTIIVVSYSIIFLVIVRK
LKSIRDLERVSNAVANQNGEQNDKKKRRRRKLLRELKVTANILLIVLPFT
TGWSYFIGTHIYEHAYQTIIKNDAHNIAMIVIPWLLSGLNPIVYLLLNRS
LRKAMVETVKKLCHDSASSMEDGSFFSTFSRRASSAIRRASAGFEEGGLL
HVPKFLNRRRDSHTSASTPSRSSVDVTKEFNMNAHALYDVEESADKEKNS
SVV Run BLAST on NCBI transcript from alignment at sc0000395:208693..211540+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021810 ID=TCONS_00021810|Name=TCONS_00021810|organism=Clytia hemisphaerica|type=transcript|length=2848bp|location=Sequence derived from alignment at sc0000395:208693..211540+ (Clytia hemisphaerica)
TAATGTCAAGTGAGACAAATCAGTGACGTCATCGACACTTAACATAACTC
GCCAAAAGATACTTATTAACTCGCCAccttgaaattttcttcttgaaaac
aataacAAGATTTAAGtagaaattctaaaaatatcTTTCACAAATTAATA
CCATTGGTCGGTAAGCAACTGCCGGTATAAAAGCATTAACTGCAATGAAT
TAAGGTGTTACACAAGATGGGGTAATGAACGCGAGAGGGTCGGTTATGTA
AAACAAATGTCAAAAGAACTTATGAaagaaatctaatttttttcaatcga
GGAATTTTGTGATCAGTTTATTTTCCGTGGATAGAGTTGAGGTATGTGTG
GAAATCTTCGAGCTGTGTGTGGATGTagttgattttttgttttttataag
aaccagtattTTTTGTTAAGgctcgactgttcttatttttaccattttca
gcATCAACTtattcttatcatgttcttatttttagtgcaaaattgtgtta
ttttaggtttttattttAGGCCAAATTACTAATACGTCAACTCTTTGTCT
GCTTTAAGTTTAGTCATTCCAGGTCCagttttgttcttaaattgttctta
tttttgaggTTCTTGAGCCTTCAGTTCTTATGGAATGATtctatgaaaat
gattttgttcGACTTTATCATGTTATTGcatctttaaattttttagtttG
GGTATAAACGGAGATAACGCTTTAACCTCTGCACATCTTGAGCATTCACC
ACATTTAGTAAAGTTCAAAAAGTCAGATTCAAAAGCTGATTAAGCCTTCA
AATGAAGTATGCTATCAAATCTAAAGCAATTTTACGATCGATGAAATAAC
AAGGCTGAAAACTGGACTATTGGGTTTTCTTGTTCTGTAATCAtgttcga
aatatattgagattttagtgtgttttaacgttttttgagaattttgtctg
aaatattttgtccatgattgtggTATAATTTTCAGAATCATTGCATATGA
ATGCAAAAGTAATGACTTTATCAAGCTTGATTGGTTTTAGATTATAGaaa
cacaataaaaaaaaacaagtcagCAAACAACAGCAACGGAATCTTCAACA
AAATccaaaacaacattttacagACTTGCCATCATCAACAACAGTTACGT
GTAACCATGGTAATCAATACGTCGTCATCCAACACCACAAACACTGGCAT
AATACCCAACAATGAGTGGACATTTTTTTCACTACAAATCACcggctttt
ttacgttttttgttggATTTCCTACCAATCTGATCATCATATACTTAGTC
TTACGTCGACGTCGATTACGTAATCCGACAAATTATTTTGTATGTAGTTT
AGCCGTCGCCGATGTTTTAGTGTTAATTTGGTTGCTTATTTGGGTCCTTG
GCATACATAACATCTTATCAACAGTCGAAGTAAAGAAGTTCATTATCCCC
ACCATAGACATTTTCCTAGGCGTCGCATCGATTATTAACGTAGCTTGCGT
AAGCGCAGATCGCGGTATCGCCGTTGTATATCCGTTACGTTACGAATTCA
TATTAACAAAACGTCGCTCCGTGTATGCTATCTTGTTCGTCTGGTGTTAT
GCATTCGCGTTACTGATTGCTGCGTTTTTACGTATACGCTATCAAAATGA
GACTTTTTACGCCGTGATTTTGTACGTGGGATTCATGAGTTATTTTGTTC
CCGTAACCATCATTGTTGTGTCTTATTCCATCATATTTTTGGTCATCGTT
CGAAAGCTCAAAAGTATAAGGGATCTGGAACGAGTATCAAATGCAGTAGC
CAATCAAAACGGagaacaaaatgataaaaagaaacGACGGCGTCGGAAAT
TATTACGTGAGTTAAAAGTGACGGCGAACATATTACTTATCGTTTTACCG
TTTACGACAGGTTGGTCGTATTTTATCGGTACTCACATTTACGAGCATGC
GTATCAGACGATAATTAAGAACGATGCTCATAATATCGCTATGATCGTAA
TCCCCTGGTTACTGTCAGGATTGAACCCTATAGTATACTTGTTACTCAAT
CGGTCATTACGTAAAGCCATGGTTGAAACAGTTAAGAAACTTTGTCATGA
TAGTGCTTCGAGTATGGAAGATGGCAGTTTTTTCTCTACTTTTTCAAGAC
GTGCTTCAAGTGCAATACGCCGTGCTTCCGCTGGCTTCGAAGAAGGTGGA
TTGTTACACGTTCCGAAATTCCTCAACAGGAGGAGGGACTCACATACTTC
AGCCAGCACTCCATCCAGGAGCTCTGTTGACGTCACGAAAGAATTTAACA
TGAATGCGCATGCGCTTTATGACGTAGAAGAAAGTGCTGACAAAGAAAAG
AATTCTTCGGTCGTTTAGTGTAAATAGACTCTAAACTTAAAATTGAGCAA
GACCGACATTCGTACAGGCGCATTCACTTTTCCGACTCCGGAAAGACTTG
TATTTTTAAGTGCGtcttttttaaagacttttattCATAAACATCTGCAC
TGAAATTACTTATTGAACATTCTGAAAACTGAATCGAACGATTTTAGTTT
TGTAACTtgtaaaaacttttctttgagTAGGGAAaccttttatttttcat
gaacCTTTCTGGCGCCCGCTTTAACGAGGGCTTCGGTTTGCTTGTTtata
tttttgaccaaaatctGGACTTAGAGAAACTTGTATATATTCCAGATTTG
GTGCTTAGGATTTCTTATACAACTACCTCGACTGTACATAGTAAACATTT
TAACAGTTTCACTGTGATATTTTTTAACATGAAACTAAAGATTCGCCACA
AATACAACGTTTTTACCCCTTTGTCACTTTTAAGAAAATGCTTCACCC Coding sequence (CDS) from alignment at sc0000395:208693..211540+ >TCONS_00021810 ID=TCONS_00021810|Name=TCONS_00021810|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000395:208693..211540+ (Clytia hemisphaerica)
ATGGTAATCAATACGTCGTCATCCAACACCACAAACACTGGCATAATACC
CAACAATGAGTGGACATTTTTTTCACTACAAATCACcggcttttttacgt
tttttgttggATTTCCTACCAATCTGATCATCATATACTTAGTCTTACGT
CGACGTCGATTACGTAATCCGACAAATTATTTTGTATGTAGTTTAGCCGT
CGCCGATGTTTTAGTGTTAATTTGGTTGCTTATTTGGGTCCTTGGCATAC
ATAACATCTTATCAACAGTCGAAGTAAAGAAGTTCATTATCCCCACCATA
GACATTTTCCTAGGCGTCGCATCGATTATTAACGTAGCTTGCGTAAGCGC
AGATCGCGGTATCGCCGTTGTATATCCGTTACGTTACGAATTCATATTAA
CAAAACGTCGCTCCGTGTATGCTATCTTGTTCGTCTGGTGTTATGCATTC
GCGTTACTGATTGCTGCGTTTTTACGTATACGCTATCAAAATGAGACTTT
TTACGCCGTGATTTTGTACGTGGGATTCATGAGTTATTTTGTTCCCGTAA
CCATCATTGTTGTGTCTTATTCCATCATATTTTTGGTCATCGTTCGAAAG
CTCAAAAGTATAAGGGATCTGGAACGAGTATCAAATGCAGTAGCCAATCA
AAACGGagaacaaaatgataaaaagaaacGACGGCGTCGGAAATTATTAC
GTGAGTTAAAAGTGACGGCGAACATATTACTTATCGTTTTACCGTTTACG
ACAGGTTGGTCGTATTTTATCGGTACTCACATTTACGAGCATGCGTATCA
GACGATAATTAAGAACGATGCTCATAATATCGCTATGATCGTAATCCCCT
GGTTACTGTCAGGATTGAACCCTATAGTATACTTGTTACTCAATCGGTCA
TTACGTAAAGCCATGGTTGAAACAGTTAAGAAACTTTGTCATGATAGTGC
TTCGAGTATGGAAGATGGCAGTTTTTTCTCTACTTTTTCAAGACGTGCTT
CAAGTGCAATACGCCGTGCTTCCGCTGGCTTCGAAGAAGGTGGATTGTTA
CACGTTCCGAAATTCCTCAACAGGAGGAGGGACTCACATACTTCAGCCAG
CACTCCATCCAGGAGCTCTGTTGACGTCACGAAAGAATTTAACATGAATG
CGCATGCGCTTTATGACGTAGAAGAAAGTGCTGACAAAGAAAAGAATTCT
TCGGTCGTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021810-exon-sc0000395-1491911889:208693..209033 | TCONS_00021810-exon-sc0000395-1491911889:208693..209033 | Clytia hemisphaerica | exon |
| TCONS_00021810-exon-sc0000395-1510915933:208693..209033 | TCONS_00021810-exon-sc0000395-1510915933:208693..209033 | Clytia hemisphaerica | exon |
| TCONS_00021810-exon-sc0000395-1575043694:208693..209033 | TCONS_00021810-exon-sc0000395-1575043694:208693..209033 | Clytia hemisphaerica | exon |
| TCONS_00021810-exon-sc0000395-1491911889:209389..211540 | TCONS_00021810-exon-sc0000395-1491911889:209389..211540 | Clytia hemisphaerica | exon |
| TCONS_00021810-exon-sc0000395-1510915933:209389..211540 | TCONS_00021810-exon-sc0000395-1510915933:209389..211540 | Clytia hemisphaerica | exon |
| TCONS_00021810-exon-sc0000395-1575043694:209389..211540 | TCONS_00021810-exon-sc0000395-1575043694:209389..211540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:208693..211540 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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