TCONS_00021810-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00021810-protein
Unique Name	TCONS_00021810-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	403

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00021810-protein ID=TCONS_00021810-protein|Name=TCONS_00021810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MVINTSSSNTTNTGIIPNNEWTFFSLQITGFFTFFVGFPTNLIIIYLVLR
RRRLRNPTNYFVCSLAVADVLVLIWLLIWVLGIHNILSTVEVKKFIIPTI
DIFLGVASIINVACVSADRGIAVVYPLRYEFILTKRRSVYAILFVWCYAF
ALLIAAFLRIRYQNETFYAVILYVGFMSYFVPVTIIVVSYSIIFLVIVRK
LKSIRDLERVSNAVANQNGEQNDKKKRRRRKLLRELKVTANILLIVLPFT
TGWSYFIGTHIYEHAYQTIIKNDAHNIAMIVIPWLLSGLNPIVYLLLNRS
LRKAMVETVKKLCHDSASSMEDGSFFSTFSRRASSAIRRASAGFEEGGLL
HVPKFLNRRRDSHTSASTPSRSSVDVTKEFNMNAHALYDVEESADKEKNS
SVV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012242	XLOC_012242	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00021810	TCONS_00021810	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 137..158 score: 18.58 coord: 25..49 score: 17.02 coord: 101..123 score: 25.92 coord: 276..302 score: 24.06 coord: 171..194 score: 23.12 coord: 58..79 score: 36.03
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 34..309 e-value: 1.2E-5 score: -26.3
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 40..294 e-value: 9.9E-31 score: 106.8
None	No IPR available	GENE3D	1.20.1070.10		coord: 2..344 e-value: 1.9E-47 score: 161.2
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 12..319
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 40..294 score: 27.152

Blast

[Close]

BLAST of TCONS_00021810-protein vs. Swiss-Prot (Human)
Match: ADA1A (Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.097e-20
Identity = 98/360 (27.22%), Postives = 159/360 (44.17%), Query Frame = 0

Query:    5 TSSSNTTNTGIIPNNEWTFFSLQITGFFTFFVGFPTNLIIIYLVLRRRRLRNPTNYFVCSLAVADVLVLIWLLIWVLGIHNILSTVEVKKF------IIPTIDIFLGVASIINVACVSADRGIAVVYPLRYEFILTKRRSVYAILFVWCYAFALLIAAFLRIRY---QNETFYAV------ILYVGFMSYFVPVTIIVVSYSIIFLVIVRKLKSIR--------DLERVS------NAVANQNGEQNDKKKR----RRRKLLRELKVTANILLIVLPFTTGWSYF-----IGTHIYE-HAYQTIIKNDAHNIAMIVIPWLLSGLNPIVYLLLNRSLRKAM--VETVKKLCHDSASSMEDG 323
            + SSN T      N         I G    F G   N+++I  V   R L + T+Y++ +LAVAD+L    L   VL    I   +    F      I   +D+    ASI+ +  +S DR I V YPLRY  I+T+RR + A+L VW  +  + I      R    ++ET   +      +L+    S+++P+ II+V Y  +++V  R+ + ++        D E+V+      NA A  +G  + K K     R  K  RE K    + ++V  F   W  F     IG+   +    +T+ K       +  + +L S +NPI+Y   ++  +KA   V  ++ LC   +S    G
Sbjct:    9 SDSSNCTQPPAPVNISKAILLGVILGGLILF-GVLGNILVILSVACHRHLHSVTHYYIVNLAVADLL----LTSTVLPFSAIFEVLGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGLMALLCVWALSLVISIGPLFGWRQPAPEDETICQINEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFK------IVFWLGYLNSCINPIIYPCSSQEFKKAFQNVLRIQCLCRKQSSKHALG 357

The following BLAST results are available for this feature:

BLAST of TCONS_00021810-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00021810-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA1A	2.097e-20	27.22	Alpha-1A adrenergic receptor OS=Homo sapiens GN=AD...	[more]

You are here

TCONS_00021810-protein (polypeptide) - C. hemisphaerica